Wall clock time and date at job start Tue Mar 31 2020 02:40:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86796 * 120.00219 * 2 1
4 4 H 1.48508 * 109.47191 * 179.72459 * 3 2 1
5 5 H 1.48502 * 109.47334 * 299.72621 * 3 2 1
6 6 H 1.48507 * 109.46927 * 59.72808 * 3 2 1
7 7 C 1.38818 * 119.99780 * 179.72654 * 2 1 3
8 8 H 1.07998 * 120.00075 * 155.26156 * 7 2 1
9 9 N 1.36935 * 119.99962 * 335.26864 * 7 2 1
10 10 C 1.46926 * 120.63260 * 332.10221 * 9 7 2
11 11 C 1.52762 * 109.01244 * 233.59040 * 10 9 7
12 12 C 1.53046 * 109.37765 * 305.58424 * 11 10 9
13 13 C 1.50700 * 109.44349 * 181.25247 * 12 11 10
14 14 N 1.30278 * 126.28469 * 299.96376 * 13 12 11
15 15 N 1.28663 * 109.37846 * 179.97438 * 14 13 12
16 16 C 1.30269 * 109.38367 * 359.97438 * 15 14 13
17 17 C 1.50708 * 126.28008 * 180.02562 * 16 15 14
18 18 F 1.39892 * 109.47250 * 4.97258 * 17 16 15
19 19 F 1.39901 * 109.47120 * 124.97781 * 17 16 15
20 20 F 1.39901 * 109.46609 * 244.97191 * 17 16 15
21 21 O 1.34358 * 107.43672 * 359.75790 * 16 15 14
22 22 C 1.53042 * 109.53636 * 61.24308 * 12 11 10
23 23 C 1.46923 * 120.63374 * 152.38709 * 9 7 2
24 24 H 0.97000 * 120.00039 * 174.25178 * 1 2 3
25 25 H 1.09007 * 109.58504 * 353.42192 * 10 9 7
26 26 H 1.09001 * 109.58989 * 113.84464 * 10 9 7
27 27 H 1.08999 * 109.56431 * 185.55424 * 11 10 9
28 28 H 1.08994 * 109.35894 * 65.49636 * 11 10 9
29 29 H 1.08990 * 109.45863 * 301.21822 * 12 11 10
30 30 H 1.09002 * 109.49413 * 178.67997 * 22 12 11
31 31 H 1.09002 * 109.52526 * 58.59802 * 22 12 11
32 32 H 1.08999 * 109.59145 * 246.15524 * 23 9 7
33 33 H 1.09002 * 109.58420 * 6.43424 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7103 1.3463 0.0067
5 1 1.8966 2.3935 -1.2158
6 1 1.8865 2.3992 1.2092
7 6 2.0103 -1.2022 0.0057
8 1 3.0159 -1.2470 -0.3854
9 7 1.4197 -2.3313 0.5073
10 6 0.3880 -2.2369 1.5491
11 6 0.7869 -3.1246 2.7265
12 6 1.0459 -4.5472 2.2250
13 6 1.4097 -5.4314 3.3899
14 7 2.4251 -5.2728 4.1905
15 7 2.4265 -6.2124 5.0695
16 6 1.4118 -7.0020 4.8599
17 6 1.0512 -8.2237 5.6654
18 9 1.9139 -8.3311 6.7613
19 9 -0.2674 -8.1106 6.1191
20 9 1.1721 -9.3634 4.8631
21 8 0.7424 -6.5240 3.7975
22 6 2.1972 -4.5328 1.2168
23 6 1.8102 -3.6606 0.0183
24 1 -0.4850 -0.8358 -0.0841
25 1 0.3016 -1.2035 1.8852
26 1 -0.5680 -2.5740 1.1483
27 1 -0.0175 -3.1390 3.4618
28 1 1.6933 -2.7301 3.1856
29 1 0.1467 -4.9319 1.7440
30 1 2.3965 -5.5494 0.8777
31 1 3.0906 -4.1253 1.6898
32 1 0.9727 -4.1163 -0.5099
33 1 2.6604 -3.5662 -0.6573
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000075165304.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:40:09
Heat of formation + Delta-G solvation = -88.598732 kcal
Electronic energy + Delta-G solvation = -23326.047993 eV
Core-core repulsion = 19167.819925 eV
Total energy + Delta-G solvation = -4158.228068 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 291.094 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-50.83072 -48.34582 -48.33613 -44.74557 -38.20231 -36.68831 -34.36146 -32.18228
-30.75130 -29.95839 -27.44919 -25.71313 -23.89575 -23.26372 -22.58594 -21.80553
-19.69118 -19.33243 -19.31233 -18.89522 -17.55874 -17.53716 -17.08096 -15.43962
-15.13532 -15.02994 -14.71120 -14.48634 -14.43119 -14.42554 -14.30311 -13.69256
-13.60255 -13.59438 -13.31599 -12.88904 -12.66362 -12.35290 -11.92466 -11.74988
-11.28035 -10.88967 -10.77021 -10.59620 -10.51012 -10.33745 -10.07811 -9.83641
-9.42582 -8.47165 -7.04216 -6.16633 -3.34342 0.43519 0.97571 1.87859
2.21664 2.78624 3.41261 3.48453 3.50542 3.59284 3.64322 3.98842
4.51146 4.55328 4.57925 4.88693 4.95562 4.98558 5.13243 5.38722
5.46062 5.69136 5.88191 6.04560 6.12252 6.19845 6.22023 6.48858
6.61736 6.86528 6.99277 7.74482 7.91665 8.47278 8.98634 9.72907
10.14424 11.12358
Molecular weight = 291.09amu
Principal moments of inertia in cm(-1)
A = 0.040337 B = 0.003358 C = 0.003338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.985403 B = 8337.237106 C = 8386.966672
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C -0.021 4.021
3 Si 1.068 2.932
4 H -0.291 1.291
5 H -0.293 1.293
6 H -0.289 1.289
7 C -0.352 4.352
8 H 0.059 0.941
9 N -0.598 5.598
10 C 0.152 3.848
11 C -0.127 4.127
12 C 0.008 3.992
13 C 0.228 3.772
14 N -0.278 5.278
15 N -0.205 5.205
16 C 0.037 3.963
17 C 0.593 3.407
18 F -0.138 7.138
19 F -0.154 7.154
20 F -0.154 7.154
21 O -0.199 6.199
22 C -0.125 4.125
23 C 0.150 3.850
24 H 0.269 0.731
25 H 0.090 0.910
26 H 0.023 0.977
27 H 0.059 0.941
28 H 0.078 0.922
29 H 0.102 0.898
30 H 0.059 0.941
31 H 0.078 0.922
32 H 0.022 0.978
33 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.153 -16.007 8.940 18.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.555 5.555
2 C -0.223 4.223
3 Si 0.898 3.102
4 H -0.217 1.217
5 H -0.221 1.221
6 H -0.216 1.216
7 C -0.481 4.481
8 H 0.077 0.923
9 N -0.322 5.322
10 C 0.026 3.974
11 C -0.167 4.167
12 C -0.012 4.012
13 C 0.020 3.980
14 N -0.125 5.125
15 N -0.056 5.056
16 C -0.176 4.176
17 C 0.536 3.464
18 F -0.119 7.119
19 F -0.135 7.135
20 F -0.135 7.135
21 O -0.077 6.077
22 C -0.165 4.165
23 C 0.023 3.977
24 H 0.080 0.920
25 H 0.108 0.892
26 H 0.041 0.959
27 H 0.077 0.923
28 H 0.096 0.904
29 H 0.120 0.880
30 H 0.077 0.923
31 H 0.097 0.903
32 H 0.040 0.960
33 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 1.036 -13.867 9.524 16.855
hybrid contribution -0.918 -2.510 -0.365 2.698
sum 0.118 -16.377 9.159 18.765
Atomic orbital electron populations
1.70748 1.06640 1.30379 1.47772 1.25873 0.96483 1.01549 0.98434
0.83487 0.74482 0.75485 0.76749 1.21708 1.22062 1.21575 1.20033
0.97548 0.88393 1.42150 0.92288 1.44155 1.45804 1.01376 1.40819
1.20910 0.90666 0.99225 0.86621 1.22219 1.02447 0.91539 1.00521
1.20255 1.01524 0.92315 0.87087 1.29312 0.86878 0.84046 0.97754
1.74628 1.18772 1.16644 1.02424 1.74482 1.14889 0.99026 1.17228
1.27191 0.95112 1.02063 0.93211 1.15851 0.75285 0.78436 0.76846
1.93326 1.69619 1.95744 1.53228 1.93319 1.35195 1.95786 1.89221
1.93318 1.95592 1.51332 1.73274 1.84842 1.48651 1.36781 1.37416
1.22200 0.96777 1.00498 0.96996 1.20887 0.98279 0.86156 0.92329
0.91971 0.89212 0.95930 0.92280 0.90363 0.87982 0.92265 0.90289
0.96018 0.91530
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.14 12.40 55.49 0.69 -25.45 16
2 C -0.02 -0.58 4.69 -17.43 -0.08 -0.66 16
3 Si 1.07 24.45 29.99 -169.99 -5.10 19.35 16
4 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16
5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
7 C -0.35 -9.31 9.49 -15.06 -0.14 -9.46 16
8 H 0.06 1.58 7.94 -52.49 -0.42 1.16 16
9 N -0.60 -13.83 2.86 -172.58 -0.49 -14.32 16
10 C 0.15 3.23 4.66 -3.93 -0.02 3.21 16
11 C -0.13 -2.19 5.33 -26.83 -0.14 -2.34 16
12 C 0.01 0.13 2.62 -91.73 -0.24 -0.11 16
13 C 0.23 3.44 6.99 -12.94 -0.09 3.35 16
14 N -0.28 -4.59 12.22 32.55 0.40 -4.19 16
15 N -0.21 -3.18 12.02 32.55 0.39 -2.79 16
16 C 0.04 0.49 7.76 -12.94 -0.10 0.39 16
17 C 0.59 6.20 3.57 36.01 0.13 6.33 16
18 F -0.14 -1.42 17.15 2.25 0.04 -1.38 16
19 F -0.15 -1.55 17.30 2.25 0.04 -1.51 16
20 F -0.15 -1.52 17.30 2.25 0.04 -1.49 16
21 O -0.20 -2.78 10.87 5.40 0.06 -2.72 16
22 C -0.12 -1.97 5.34 -26.61 -0.14 -2.11 16
23 C 0.15 2.83 6.52 -3.71 -0.02 2.80 16
24 H 0.27 7.67 6.71 -40.82 -0.27 7.39 16
25 H 0.09 2.18 6.30 -51.92 -0.33 1.86 16
26 H 0.02 0.48 7.87 -51.93 -0.41 0.07 16
27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
28 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16
29 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16
30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16
32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
33 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16
LS Contribution 296.00 15.07 4.46 4.46
Total: -1.00 -28.47 296.00 -3.50 -31.98
By element:
Atomic # 1 Polarization: -0.18 SS G_CDS: -3.17 Total: -3.35 kcal
Atomic # 6 Polarization: 2.27 SS G_CDS: -0.85 Total: 1.41 kcal
Atomic # 7 Polarization: -47.74 SS G_CDS: 0.98 Total: -46.75 kcal
Atomic # 8 Polarization: -2.78 SS G_CDS: 0.06 Total: -2.72 kcal
Atomic # 9 Polarization: -4.49 SS G_CDS: 0.12 Total: -4.38 kcal
Atomic # 14 Polarization: 24.45 SS G_CDS: -5.10 Total: 19.35 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -28.47 -3.50 -31.98 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075165304.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.623 kcal
(2) G-P(sol) polarization free energy of solvation -28.473 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.096 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.502 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.976 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.599 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds