Wall clock time and date at job start Tue Mar 31 2020 02:40:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86796 * 120.00219 * 2 1
4 4 H 1.48508 * 109.47191 * 179.72459 * 3 2 1
5 5 H 1.48502 * 109.47334 * 299.72621 * 3 2 1
6 6 H 1.48507 * 109.46927 * 59.72808 * 3 2 1
7 7 C 1.38818 * 119.99780 * 179.72654 * 2 1 3
8 8 H 1.07998 * 120.00075 * 155.26156 * 7 2 1
9 9 N 1.36935 * 119.99962 * 335.26864 * 7 2 1
10 10 C 1.46926 * 120.63260 * 332.10221 * 9 7 2
11 11 C 1.52762 * 109.01244 * 233.59040 * 10 9 7
12 12 C 1.53046 * 109.37765 * 305.58424 * 11 10 9
13 13 C 1.50700 * 109.44349 * 181.25247 * 12 11 10
14 14 N 1.30278 * 126.28469 * 299.96376 * 13 12 11
15 15 N 1.28663 * 109.37846 * 179.97438 * 14 13 12
16 16 C 1.30269 * 109.38367 * 359.97438 * 15 14 13
17 17 C 1.50708 * 126.28008 * 180.02562 * 16 15 14
18 18 F 1.39892 * 109.47250 * 4.97258 * 17 16 15
19 19 F 1.39901 * 109.47120 * 124.97781 * 17 16 15
20 20 F 1.39901 * 109.46609 * 244.97191 * 17 16 15
21 21 O 1.34358 * 107.43672 * 359.75790 * 16 15 14
22 22 C 1.53042 * 109.53636 * 61.24308 * 12 11 10
23 23 C 1.46923 * 120.63374 * 152.38709 * 9 7 2
24 24 H 0.97000 * 120.00039 * 174.25178 * 1 2 3
25 25 H 1.09007 * 109.58504 * 353.42192 * 10 9 7
26 26 H 1.09001 * 109.58989 * 113.84464 * 10 9 7
27 27 H 1.08999 * 109.56431 * 185.55424 * 11 10 9
28 28 H 1.08994 * 109.35894 * 65.49636 * 11 10 9
29 29 H 1.08990 * 109.45863 * 301.21822 * 12 11 10
30 30 H 1.09002 * 109.49413 * 178.67997 * 22 12 11
31 31 H 1.09002 * 109.52526 * 58.59802 * 22 12 11
32 32 H 1.08999 * 109.59145 * 246.15524 * 23 9 7
33 33 H 1.09002 * 109.58420 * 6.43424 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7103 1.3463 0.0067
5 1 1.8966 2.3935 -1.2158
6 1 1.8865 2.3992 1.2092
7 6 2.0103 -1.2022 0.0057
8 1 3.0159 -1.2470 -0.3854
9 7 1.4197 -2.3313 0.5073
10 6 0.3880 -2.2369 1.5491
11 6 0.7869 -3.1246 2.7265
12 6 1.0459 -4.5472 2.2250
13 6 1.4097 -5.4314 3.3899
14 7 2.4251 -5.2728 4.1905
15 7 2.4265 -6.2124 5.0695
16 6 1.4118 -7.0020 4.8599
17 6 1.0512 -8.2237 5.6654
18 9 1.9139 -8.3311 6.7613
19 9 -0.2674 -8.1106 6.1191
20 9 1.1721 -9.3634 4.8631
21 8 0.7424 -6.5240 3.7975
22 6 2.1972 -4.5328 1.2168
23 6 1.8102 -3.6606 0.0183
24 1 -0.4850 -0.8358 -0.0841
25 1 0.3016 -1.2035 1.8852
26 1 -0.5680 -2.5740 1.1483
27 1 -0.0175 -3.1390 3.4618
28 1 1.6933 -2.7301 3.1856
29 1 0.1467 -4.9319 1.7440
30 1 2.3965 -5.5494 0.8777
31 1 3.0906 -4.1253 1.6898
32 1 0.9727 -4.1163 -0.5099
33 1 2.6604 -3.5662 -0.6573
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000075165304.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:40:08
Heat of formation + Delta-G solvation = -108.788310 kcal
Electronic energy + Delta-G solvation = -23326.923479 eV
Core-core repulsion = 19167.819925 eV
Total energy + Delta-G solvation = -4159.103554 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 291.094 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-51.66444 -49.16753 -49.16432 -45.89355 -39.71470 -37.83941 -35.99883 -33.63432
-32.23494 -31.55643 -28.63617 -27.22991 -25.40209 -24.35241 -24.07946 -23.27643
-21.01082 -20.45209 -20.19888 -19.81211 -19.39421 -18.65140 -18.23730 -16.83862
-16.13414 -15.95571 -15.94427 -15.78626 -15.52677 -15.37265 -15.24680 -15.24114
-15.22044 -14.78252 -14.69097 -14.15427 -14.04935 -13.56913 -13.48083 -13.07691
-12.81584 -12.57234 -12.32873 -12.10321 -11.96793 -11.92516 -11.82183 -11.28244
-11.15797 -10.46188 -8.95473 -8.23765 -5.39129 -0.67030 -0.04499 0.70602
1.20064 1.61903 1.67944 1.84418 1.86069 2.45229 2.66090 2.74539
2.86715 3.21323 3.42135 3.49136 3.51545 3.65105 3.69657 3.75466
4.23255 4.24333 4.44670 4.58384 4.74541 4.76416 4.81438 4.98687
5.13955 5.17014 5.39913 5.87457 6.42527 6.59604 7.06285 7.77256
8.19858 9.02947
Molecular weight = 291.09amu
Principal moments of inertia in cm(-1)
A = 0.040337 B = 0.003358 C = 0.003338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.985403 B = 8337.237106 C = 8386.966672
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.942 5.942
2 C -0.070 4.070
3 Si 1.112 2.888
4 H -0.276 1.276
5 H -0.292 1.292
6 H -0.289 1.289
7 C -0.355 4.355
8 H 0.051 0.949
9 N -0.619 5.619
10 C 0.158 3.842
11 C -0.115 4.115
12 C 0.017 3.983
13 C 0.231 3.769
14 N -0.300 5.300
15 N -0.228 5.228
16 C 0.052 3.948
17 C 0.605 3.395
18 F -0.135 7.135
19 F -0.147 7.147
20 F -0.146 7.146
21 O -0.194 6.194
22 C -0.112 4.112
23 C 0.147 3.853
24 H 0.258 0.742
25 H 0.052 0.948
26 H 0.023 0.977
27 H 0.079 0.921
28 H 0.061 0.939
29 H 0.125 0.875
30 H 0.090 0.910
31 H 0.062 0.938
32 H 0.035 0.965
33 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.236 -17.713 9.522 20.111
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.584 5.584
2 C -0.267 4.267
3 Si 0.938 3.062
4 H -0.201 1.201
5 H -0.219 1.219
6 H -0.216 1.216
7 C -0.484 4.484
8 H 0.069 0.931
9 N -0.343 5.343
10 C 0.032 3.968
11 C -0.154 4.154
12 C -0.003 4.003
13 C 0.022 3.978
14 N -0.147 5.147
15 N -0.078 5.078
16 C -0.162 4.162
17 C 0.548 3.452
18 F -0.116 7.116
19 F -0.128 7.128
20 F -0.127 7.127
21 O -0.071 6.071
22 C -0.152 4.152
23 C 0.022 3.978
24 H 0.068 0.932
25 H 0.070 0.930
26 H 0.041 0.959
27 H 0.097 0.903
28 H 0.080 0.920
29 H 0.143 0.857
30 H 0.109 0.891
31 H 0.081 0.919
32 H 0.052 0.948
33 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 1.139 -15.611 10.119 18.638
hybrid contribution -0.945 -2.095 -0.527 2.358
sum 0.194 -17.707 9.592 20.139
Atomic orbital electron populations
1.70849 1.07450 1.29717 1.50426 1.27010 0.96607 1.04486 0.98589
0.82883 0.74279 0.72453 0.76587 1.20116 1.21851 1.21555 1.20238
0.97230 0.89855 1.41125 0.93132 1.44384 1.46069 1.02166 1.41693
1.20733 0.90433 0.98045 0.87554 1.21957 1.02258 0.92224 0.98994
1.20075 1.02196 0.91056 0.87021 1.28961 0.86807 0.84453 0.97566
1.74602 1.19621 1.17390 1.03042 1.74445 1.16094 0.99601 1.17666
1.27735 0.94017 1.01991 0.92418 1.15588 0.75457 0.77595 0.76562
1.93343 1.69634 1.95615 1.52970 1.93341 1.34721 1.95703 1.89075
1.93341 1.95578 1.50634 1.73161 1.84843 1.48365 1.36382 1.37522
1.22004 0.96226 1.01287 0.95675 1.21023 0.98416 0.84708 0.93698
0.93178 0.92954 0.95907 0.90273 0.92029 0.85672 0.89118 0.91874
0.94755 0.92070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -54.96 12.40 21.65 0.27 -54.69 16
2 C -0.07 -3.84 4.69 84.86 0.40 -3.44 16
3 Si 1.11 49.86 29.99 68.60 2.06 51.91 16
4 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16
5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16
6 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16
7 C -0.35 -18.97 9.49 84.04 0.80 -18.18 16
8 H 0.05 2.73 7.94 -2.91 -0.02 2.71 16
9 N -0.62 -28.68 2.86 -699.92 -2.00 -30.68 16
10 C 0.16 6.76 4.66 86.22 0.40 7.16 16
11 C -0.11 -3.84 5.33 30.53 0.16 -3.67 16
12 C 0.02 0.46 2.62 -11.51 -0.03 0.43 16
13 C 0.23 6.42 6.99 88.34 0.62 7.04 16
14 N -0.30 -9.43 12.22 -165.50 -2.02 -11.45 16
15 N -0.23 -6.66 12.02 -165.51 -1.99 -8.65 16
16 C 0.05 1.26 7.76 88.34 0.69 1.95 16
17 C 0.60 11.04 3.57 71.24 0.25 11.29 16
18 F -0.13 -2.46 17.15 44.97 0.77 -1.69 16
19 F -0.15 -2.55 17.30 44.97 0.78 -1.77 16
20 F -0.15 -2.47 17.30 44.97 0.78 -1.69 16
21 O -0.19 -4.83 10.87 -3.61 -0.04 -4.87 16
22 C -0.11 -3.31 5.34 30.67 0.16 -3.15 16
23 C 0.15 5.37 6.52 86.36 0.56 5.93 16
24 H 0.26 15.10 6.71 -92.71 -0.62 14.48 16
25 H 0.05 2.62 6.30 -2.38 -0.02 2.61 16
26 H 0.02 0.97 7.87 -2.39 -0.02 0.95 16
27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16
28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16
29 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16
30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16
31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16
33 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16
Total: -1.00 -61.40 296.00 3.92 -57.48
By element:
Atomic # 1 Polarization: -0.57 SS G_CDS: 1.31 Total: 0.74 kcal
Atomic # 6 Polarization: 1.35 SS G_CDS: 4.01 Total: 5.36 kcal
Atomic # 7 Polarization: -99.73 SS G_CDS: -5.74 Total: -105.47 kcal
Atomic # 8 Polarization: -4.83 SS G_CDS: -0.04 Total: -4.87 kcal
Atomic # 9 Polarization: -7.48 SS G_CDS: 2.33 Total: -5.15 kcal
Atomic # 14 Polarization: 49.86 SS G_CDS: 2.06 Total: 51.91 kcal
Total: -61.40 3.92 -57.48 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075165304.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.307 kcal
(2) G-P(sol) polarization free energy of solvation -61.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.482 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds