Wall clock time and date at job start Tue Mar 31 2020 02:40:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86801 * 120.00181 * 2 1
4 4 H 1.48504 * 109.46662 * 270.00102 * 3 2 1
5 5 H 1.48506 * 109.46893 * 29.99686 * 3 2 1
6 6 H 1.48492 * 109.47154 * 149.99926 * 3 2 1
7 7 C 1.37874 * 119.99726 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00147 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00354 * 359.97438 * 7 2 1
10 10 N 1.46498 * 109.47096 * 180.02562 * 9 7 2
11 11 C 1.34782 * 119.99675 * 180.02562 * 10 9 7
12 12 O 1.21582 * 120.00071 * 4.97931 * 11 10 9
13 13 N 1.34774 * 119.99915 * 184.98301 * 11 10 9
14 14 C 1.46926 * 120.63121 * 174.77166 * 13 11 10
15 15 C 1.53195 * 108.89465 * 126.33965 * 14 13 11
16 16 C 1.53354 * 109.14570 * 54.57617 * 15 14 13
17 17 S 1.81404 * 109.41333 * 178.67522 * 16 15 14
18 18 N 1.65598 * 104.44964 * 305.12653 * 17 16 15
19 19 O 1.42095 * 110.54366 * 56.75525 * 17 16 15
20 20 O 1.42102 * 110.53821 * 193.50504 * 17 16 15
21 21 C 1.53040 * 109.60905 * 298.70899 * 16 15 14
22 22 C 1.46926 * 120.63157 * 354.78914 * 13 11 10
23 23 H 0.96998 * 119.99708 * 0.02562 * 1 2 3
24 24 H 1.09007 * 109.46781 * 60.00452 * 9 7 2
25 25 H 1.08998 * 109.47255 * 300.00817 * 9 7 2
26 26 H 0.96993 * 120.00686 * 359.97438 * 10 9 7
27 27 H 1.08999 * 109.58363 * 246.19988 * 14 13 11
28 28 H 1.09002 * 109.58625 * 6.48116 * 14 13 11
29 29 H 1.08997 * 109.49623 * 174.65400 * 15 14 13
30 30 H 1.09002 * 109.49577 * 294.75334 * 15 14 13
31 31 H 1.08994 * 109.42367 * 58.75582 * 16 15 14
32 32 H 0.97006 * 119.99891 * 150.00545 * 18 17 16
33 33 H 0.96994 * 120.00179 * 329.99995 * 18 17 16
34 34 H 1.08993 * 109.50186 * 301.42491 * 21 16 15
35 35 H 1.09004 * 109.52060 * 181.34332 * 21 16 15
36 36 H 1.09010 * 109.58451 * 353.37613 * 22 13 11
37 37 H 1.08999 * 109.58904 * 113.65827 * 22 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0005
11 6 1.7537 -4.8834 -0.0011
12 8 0.5621 -5.1068 -0.0929
13 7 2.6253 -5.9064 0.1003
14 6 2.1452 -7.2902 0.2162
15 6 2.8098 -8.1386 -0.8726
16 6 4.3323 -7.9875 -0.7688
17 16 5.1281 -9.0200 -2.0303
18 7 4.5224 -10.5381 -1.7639
19 8 4.6564 -8.6768 -3.3259
20 8 6.5187 -9.1463 -1.7665
21 6 4.7194 -6.5234 -0.9899
22 6 4.0736 -5.6590 0.0975
23 1 -0.4849 0.8401 -0.0004
24 1 0.6240 -2.5567 -0.8904
25 1 0.6246 -2.5571 0.8896
26 1 3.1566 -3.4355 -0.0009
27 1 2.4055 -7.6862 1.1978
28 1 1.0630 -7.3135 0.0879
29 1 2.5345 -9.1845 -0.7374
30 1 2.4767 -7.7980 -1.8531
31 1 4.6614 -8.3047 0.2206
32 1 4.4271 -11.1588 -2.5033
33 1 4.2631 -10.8066 -0.8687
34 1 4.3686 -6.1982 -1.9693
35 1 5.8035 -6.4217 -0.9395
36 1 4.2640 -4.6062 -0.1116
37 1 4.4907 -5.9196 1.0702
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001681910638.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:40:58
Heat of formation + Delta-G solvation = -102.988943 kcal
Electronic energy + Delta-G solvation = -21667.411767 eV
Core-core repulsion = 18185.860384 eV
Total energy + Delta-G solvation = -3481.551383 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 291.109 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.00372 -37.50641 -37.22766 -36.21098 -34.32655 -33.68211 -33.06234 -32.24233
-31.15688 -27.39512 -25.57807 -23.72194 -22.59978 -21.28840 -19.73931 -19.28350
-18.48546 -17.71747 -17.56222 -16.50444 -16.03920 -15.86899 -15.39424 -15.26971
-14.74171 -14.49776 -14.33848 -13.63156 -13.41442 -13.21595 -12.93992 -12.57966
-12.42622 -12.37349 -12.24086 -11.98054 -11.84471 -11.59883 -11.37549 -11.15473
-10.96648 -10.90002 -10.84059 -10.49366 -10.29820 -9.45216 -9.37747 -8.75763
-8.52922 -7.79223 -6.16779 -4.23612 -0.07367 2.53101 3.05195 3.24231
3.30555 3.32770 3.35389 3.77293 3.83551 3.97424 4.28450 4.37349
4.59924 4.66614 4.81951 5.00135 5.16044 5.19328 5.19870 5.20871
5.31276 5.52599 5.59987 5.68205 5.81661 5.90412 6.64234 6.67356
7.05427 7.46386 7.49706 7.54764 7.80965 7.99527 8.71908 8.85217
9.25962 9.44648 10.93452
Molecular weight = 291.11amu
Principal moments of inertia in cm(-1)
A = 0.030970 B = 0.003351 C = 0.003155
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 903.895956 B = 8353.165051 C = 8873.277033
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.064 3.936
3 Si 0.904 3.096
4 H -0.279 1.279
5 H -0.284 1.284
6 H -0.273 1.273
7 C -0.543 4.543
8 H 0.062 0.938
9 C 0.266 3.734
10 N -0.728 5.728
11 C 0.697 3.303
12 O -0.596 6.596
13 N -0.639 5.639
14 C 0.138 3.862
15 C -0.120 4.120
16 C -0.577 4.577
17 S 2.614 3.386
18 N -1.250 6.250
19 O -0.958 6.958
20 O -0.965 6.965
21 C -0.124 4.124
22 C 0.123 3.877
23 H 0.266 0.734
24 H 0.026 0.974
25 H 0.024 0.976
26 H 0.386 0.614
27 H 0.063 0.937
28 H 0.101 0.899
29 H 0.087 0.913
30 H 0.089 0.911
31 H 0.140 0.860
32 H 0.420 0.580
33 H 0.413 0.587
34 H 0.089 0.911
35 H 0.090 0.910
36 H 0.090 0.910
37 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.712 -20.489 0.329 23.122
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.140 4.140
3 Si 0.732 3.268
4 H -0.204 1.204
5 H -0.210 1.210
6 H -0.198 1.198
7 C -0.581 4.581
8 H 0.080 0.920
9 C 0.145 3.855
10 N -0.382 5.382
11 C 0.399 3.601
12 O -0.475 6.475
13 N -0.379 5.379
14 C 0.013 3.987
15 C -0.160 4.160
16 C -0.688 4.688
17 S 2.706 3.294
18 N -0.922 5.922
19 O -0.947 6.947
20 O -0.954 6.954
21 C -0.164 4.164
22 C -0.002 4.002
23 H 0.076 0.924
24 H 0.044 0.956
25 H 0.042 0.958
26 H 0.221 0.779
27 H 0.081 0.919
28 H 0.119 0.881
29 H 0.105 0.895
30 H 0.108 0.892
31 H 0.158 0.842
32 H 0.249 0.751
33 H 0.239 0.761
34 H 0.107 0.893
35 H 0.108 0.892
36 H 0.109 0.891
37 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 10.353 -20.037 -0.456 22.559
hybrid contribution 0.420 0.635 0.667 1.012
sum 10.773 -19.402 0.211 22.194
Atomic orbital electron populations
1.69979 1.06098 1.27303 1.48853 1.24943 0.94916 0.99411 0.94717
0.86408 0.79579 0.82625 0.78234 1.20446 1.21015 1.19772 1.21204
0.93215 0.90424 1.53259 0.92006 1.19007 0.87799 0.81070 0.97658
1.45905 1.10887 1.04424 1.77015 1.16057 0.84790 0.81086 0.78208
1.90863 1.14350 1.83778 1.58479 1.47282 1.05076 1.05995 1.79549
1.21221 1.00843 0.80048 0.96576 1.21880 0.89577 1.01572 1.02962
1.30353 1.08753 1.10953 1.18716 1.04934 0.74684 0.74172 0.75626
1.53198 1.86106 1.33973 1.18971 1.93613 1.81693 1.82934 1.36487
1.93619 1.30930 1.84940 1.85868 1.21786 1.01730 0.90535 1.02370
1.21427 0.81033 0.99933 0.97851 0.92437 0.95597 0.95777 0.77944
0.91854 0.88082 0.89491 0.89228 0.84220 0.75061 0.76119 0.89250
0.89155 0.89144 0.91086
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -26.02 13.29 55.43 0.74 -25.28 16
2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16
3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16
4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
7 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16
8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16
9 C 0.27 7.06 5.43 -5.19 -0.03 7.03 16
10 N -0.73 -15.45 5.46 -66.41 -0.36 -15.81 16
11 C 0.70 14.16 8.29 -86.91 -0.72 13.44 16
12 O -0.60 -14.55 15.77 5.29 0.08 -14.47 16
13 N -0.64 -9.21 2.97 -178.49 -0.53 -9.74 16
14 C 0.14 1.55 6.43 -3.71 -0.02 1.53 16
15 C -0.12 -0.98 5.28 -26.45 -0.14 -1.12 16
16 C -0.58 -4.10 2.83 -26.53 -0.08 -4.17 16
17 S 2.61 21.61 5.41 -107.50 -0.58 21.03 16
18 N -1.25 -5.75 8.78 60.35 0.53 -5.22 16
19 O -0.96 -11.85 18.10 -57.54 -1.04 -12.89 16
20 O -0.96 -11.30 18.10 -57.54 -1.04 -12.34 16
21 C -0.12 -1.11 5.37 -26.61 -0.14 -1.25 16
22 C 0.12 1.32 6.39 -3.71 -0.02 1.29 16
23 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16
24 H 0.03 0.77 8.14 -51.92 -0.42 0.34 16
25 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16
26 H 0.39 6.97 5.81 -40.82 -0.24 6.74 16
27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.10 1.35 6.99 -51.93 -0.36 0.99 16
29 H 0.09 0.40 7.64 -51.93 -0.40 0.00 16
30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
31 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.42 1.60 8.96 -34.47 -0.31 1.29 16
33 H 0.41 0.73 8.89 -34.47 -0.31 0.42 16
34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16
35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16
36 H 0.09 1.00 5.65 -51.92 -0.29 0.70 16
37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
LS Contribution 318.49 15.07 4.80 4.80
Total: -1.00 -39.02 318.49 -8.82 -47.84
By element:
Atomic # 1 Polarization: 7.72 SS G_CDS: -4.82 Total: 2.89 kcal
Atomic # 6 Polarization: 5.02 SS G_CDS: -1.57 Total: 3.44 kcal
Atomic # 7 Polarization: -56.42 SS G_CDS: 0.37 Total: -56.05 kcal
Atomic # 8 Polarization: -37.70 SS G_CDS: -2.00 Total: -39.70 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal
Atomic # 16 Polarization: 21.61 SS G_CDS: -0.58 Total: 21.03 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -39.02 -8.82 -47.84 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001681910638.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.150 kcal
(2) G-P(sol) polarization free energy of solvation -39.018 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.989 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds