Wall clock time and date at job start Tue Mar 31 2020 02:40:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86801 * 120.00181 * 2 1
4 4 H 1.48504 * 109.46662 * 270.00102 * 3 2 1
5 5 H 1.48506 * 109.46893 * 29.99686 * 3 2 1
6 6 H 1.48492 * 109.47154 * 149.99926 * 3 2 1
7 7 C 1.37874 * 119.99726 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00147 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00354 * 359.97438 * 7 2 1
10 10 N 1.46498 * 109.47096 * 180.02562 * 9 7 2
11 11 C 1.34782 * 119.99675 * 180.02562 * 10 9 7
12 12 O 1.21582 * 120.00071 * 4.97931 * 11 10 9
13 13 N 1.34774 * 119.99915 * 184.98301 * 11 10 9
14 14 C 1.46926 * 120.63121 * 174.77166 * 13 11 10
15 15 C 1.53195 * 108.89465 * 126.33965 * 14 13 11
16 16 C 1.53354 * 109.14570 * 54.57617 * 15 14 13
17 17 S 1.81404 * 109.41333 * 178.67522 * 16 15 14
18 18 N 1.65598 * 104.44964 * 305.12653 * 17 16 15
19 19 O 1.42095 * 110.54366 * 56.75525 * 17 16 15
20 20 O 1.42102 * 110.53821 * 193.50504 * 17 16 15
21 21 C 1.53040 * 109.60905 * 298.70899 * 16 15 14
22 22 C 1.46926 * 120.63157 * 354.78914 * 13 11 10
23 23 H 0.96998 * 119.99708 * 0.02562 * 1 2 3
24 24 H 1.09007 * 109.46781 * 60.00452 * 9 7 2
25 25 H 1.08998 * 109.47255 * 300.00817 * 9 7 2
26 26 H 0.96993 * 120.00686 * 359.97438 * 10 9 7
27 27 H 1.08999 * 109.58363 * 246.19988 * 14 13 11
28 28 H 1.09002 * 109.58625 * 6.48116 * 14 13 11
29 29 H 1.08997 * 109.49623 * 174.65400 * 15 14 13
30 30 H 1.09002 * 109.49577 * 294.75334 * 15 14 13
31 31 H 1.08994 * 109.42367 * 58.75582 * 16 15 14
32 32 H 0.97006 * 119.99891 * 150.00545 * 18 17 16
33 33 H 0.96994 * 120.00179 * 329.99995 * 18 17 16
34 34 H 1.08993 * 109.50186 * 301.42491 * 21 16 15
35 35 H 1.09004 * 109.52060 * 181.34332 * 21 16 15
36 36 H 1.09010 * 109.58451 * 353.37613 * 22 13 11
37 37 H 1.08999 * 109.58904 * 113.65827 * 22 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0005
11 6 1.7537 -4.8834 -0.0011
12 8 0.5621 -5.1068 -0.0929
13 7 2.6253 -5.9064 0.1003
14 6 2.1452 -7.2902 0.2162
15 6 2.8098 -8.1386 -0.8726
16 6 4.3323 -7.9875 -0.7688
17 16 5.1281 -9.0200 -2.0303
18 7 4.5224 -10.5381 -1.7639
19 8 4.6564 -8.6768 -3.3259
20 8 6.5187 -9.1463 -1.7665
21 6 4.7194 -6.5234 -0.9899
22 6 4.0736 -5.6590 0.0975
23 1 -0.4849 0.8401 -0.0004
24 1 0.6240 -2.5567 -0.8904
25 1 0.6246 -2.5571 0.8896
26 1 3.1566 -3.4355 -0.0009
27 1 2.4055 -7.6862 1.1978
28 1 1.0630 -7.3135 0.0879
29 1 2.5345 -9.1845 -0.7374
30 1 2.4767 -7.7980 -1.8531
31 1 4.6614 -8.3047 0.2206
32 1 4.4271 -11.1588 -2.5033
33 1 4.2631 -10.8066 -0.8687
34 1 4.3686 -6.1982 -1.9693
35 1 5.8035 -6.4217 -0.9395
36 1 4.2640 -4.6062 -0.1116
37 1 4.4907 -5.9196 1.0702
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001681910638.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:40:58
Heat of formation + Delta-G solvation = -137.671963 kcal
Electronic energy + Delta-G solvation = -21668.915735 eV
Core-core repulsion = 18185.860384 eV
Total energy + Delta-G solvation = -3483.055352 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 291.109 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.34620 -38.66446 -38.07075 -37.00240 -36.21891 -34.68686 -34.09226 -33.72593
-32.08028 -29.29707 -26.73976 -24.87672 -24.15889 -22.40281 -20.80043 -20.36286
-19.65826 -18.52942 -18.20027 -17.94081 -17.32275 -17.16116 -16.64436 -16.48898
-16.06583 -15.46512 -15.36157 -14.91110 -14.74658 -14.60767 -14.03144 -13.85166
-13.74839 -13.40273 -13.20579 -13.15427 -13.06307 -12.88423 -12.71200 -12.38590
-12.19522 -12.08828 -11.94667 -11.51798 -11.46156 -11.16614 -11.06638 -10.80350
-10.04969 -9.39998 -8.28375 -6.44970 -0.73287 1.43721 1.46542 1.57310
1.77912 1.97647 2.19893 2.38826 2.72130 3.06713 3.14805 3.18189
3.33610 3.72774 3.89244 4.03705 4.26020 4.36852 4.43655 4.57605
4.60385 4.73488 4.84865 4.93381 5.08734 5.13794 5.27003 5.33618
5.47500 5.57710 5.73464 5.84997 6.09896 6.43273 6.66591 7.17088
7.25414 7.69099 8.84024
Molecular weight = 291.11amu
Principal moments of inertia in cm(-1)
A = 0.030970 B = 0.003351 C = 0.003155
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 903.895956 B = 8353.165051 C = 8873.277033
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.004 3.996
3 Si 0.986 3.014
4 H -0.272 1.272
5 H -0.284 1.284
6 H -0.254 1.254
7 C -0.555 4.555
8 H 0.083 0.917
9 C 0.285 3.715
10 N -0.725 5.725
11 C 0.691 3.309
12 O -0.647 6.647
13 N -0.629 5.629
14 C 0.128 3.872
15 C -0.118 4.118
16 C -0.564 4.564
17 S 2.633 3.367
18 N -1.236 6.236
19 O -1.005 7.005
20 O -0.998 6.998
21 C -0.131 4.131
22 C 0.114 3.886
23 H 0.269 0.731
24 H -0.017 1.017
25 H -0.014 1.014
26 H 0.402 0.598
27 H 0.101 0.899
28 H 0.072 0.928
29 H 0.130 0.870
30 H 0.064 0.936
31 H 0.184 0.816
32 H 0.426 0.574
33 H 0.429 0.571
34 H 0.069 0.931
35 H 0.118 0.882
36 H 0.084 0.916
37 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.448 -21.540 1.508 25.438
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.195 4.195
3 Si 0.809 3.191
4 H -0.197 1.197
5 H -0.209 1.209
6 H -0.178 1.178
7 C -0.593 4.593
8 H 0.101 0.899
9 C 0.162 3.838
10 N -0.381 5.381
11 C 0.392 3.608
12 O -0.530 6.530
13 N -0.368 5.368
14 C 0.005 3.995
15 C -0.157 4.157
16 C -0.675 4.675
17 S 2.727 3.273
18 N -0.913 5.913
19 O -0.994 6.994
20 O -0.987 6.987
21 C -0.171 4.171
22 C -0.009 4.009
23 H 0.078 0.922
24 H 0.001 0.999
25 H 0.004 0.996
26 H 0.240 0.760
27 H 0.119 0.881
28 H 0.091 0.909
29 H 0.148 0.852
30 H 0.082 0.918
31 H 0.201 0.799
32 H 0.257 0.743
33 H 0.259 0.741
34 H 0.088 0.912
35 H 0.136 0.864
36 H 0.102 0.898
37 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 13.177 -21.176 0.721 24.951
hybrid contribution -0.460 0.833 0.329 1.007
sum 12.717 -20.343 1.050 24.014
Atomic orbital electron populations
1.70145 1.08285 1.28572 1.49921 1.26064 0.95778 1.03867 0.93841
0.85144 0.78530 0.76899 0.78546 1.19748 1.20927 1.17767 1.21584
0.94257 0.90467 1.52956 0.89890 1.18403 0.88123 0.83420 0.93868
1.45496 1.10886 1.03979 1.77735 1.16286 0.84889 0.81754 0.77874
1.90821 1.16985 1.84621 1.60541 1.47341 1.06100 1.05764 1.77551
1.21551 0.99713 0.78623 0.99646 1.21885 0.90033 1.03315 1.00450
1.30253 1.07501 1.09414 1.20342 1.04050 0.73883 0.74612 0.74726
1.52791 1.85624 1.32603 1.20304 1.93559 1.82198 1.83995 1.39679
1.93586 1.33283 1.85668 1.86200 1.21847 1.03267 0.91307 1.00677
1.21771 0.78506 1.00278 1.00353 0.92234 0.99925 0.99562 0.75954
0.88119 0.90899 0.85203 0.91752 0.79862 0.74282 0.74099 0.91208
0.86408 0.89804 0.87573
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16
2 C 0.00 0.23 5.46 84.65 0.46 0.69 16
3 Si 0.99 42.28 29.54 68.60 2.03 44.31 16
4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16
5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16
6 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16
7 C -0.55 -30.33 9.28 25.60 0.24 -30.09 16
8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16
9 C 0.29 15.95 5.43 85.63 0.47 16.42 16
10 N -0.73 -31.61 5.46 -482.29 -2.63 -34.24 16
11 C 0.69 28.86 8.29 179.05 1.49 30.34 16
12 O -0.65 -33.37 15.77 -3.97 -0.06 -33.43 16
13 N -0.63 -17.47 2.97 -836.89 -2.49 -19.96 16
14 C 0.13 2.63 6.43 86.36 0.56 3.19 16
15 C -0.12 -1.61 5.28 30.78 0.16 -1.45 16
16 C -0.56 -5.96 2.83 30.73 0.09 -5.88 16
17 S 2.63 37.62 5.41 -56.49 -0.31 37.31 16
18 N -1.24 -7.53 8.78 37.02 0.33 -7.21 16
19 O -1.00 -24.21 18.10 -127.65 -2.31 -26.52 16
20 O -1.00 -21.16 18.10 -127.65 -2.31 -23.47 16
21 C -0.13 -2.00 5.37 30.67 0.16 -1.83 16
22 C 0.11 2.15 6.39 86.36 0.55 2.70 16
23 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16
24 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16
25 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
26 H 0.40 14.47 5.81 -92.71 -0.54 13.93 16
27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
28 H 0.07 1.96 6.99 -2.39 -0.02 1.94 16
29 H 0.13 0.66 7.64 -2.39 -0.02 0.64 16
30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
31 H 0.18 0.43 8.14 -2.39 -0.02 0.41 16
32 H 0.43 2.16 8.96 -96.74 -0.87 1.30 16
33 H 0.43 -0.31 8.89 -96.75 -0.86 -1.17 16
34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
35 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16
36 H 0.08 1.69 5.65 -2.38 -0.01 1.67 16
37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16
Total: -1.00 -90.46 318.49 -4.44 -94.91
By element:
Atomic # 1 Polarization: 11.47 SS G_CDS: -1.14 Total: 10.33 kcal
Atomic # 6 Polarization: 9.92 SS G_CDS: 4.17 Total: 14.09 kcal
Atomic # 7 Polarization: -113.01 SS G_CDS: -4.51 Total: -117.53 kcal
Atomic # 8 Polarization: -78.73 SS G_CDS: -4.68 Total: -83.42 kcal
Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal
Atomic # 16 Polarization: 37.62 SS G_CDS: -0.31 Total: 37.31 kcal
Total: -90.46 -4.44 -94.91 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001681910638.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.766 kcal
(2) G-P(sol) polarization free energy of solvation -90.462 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.228 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.672 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds