Wall clock time and date at job start Tue Mar 31 2020 02:49:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.08995 * 109.51570 * 2 1
4 4 C 1.53295 * 109.51521 * 239.90153 * 2 1 3
5 5 N 1.47152 * 108.38588 * 187.77780 * 4 2 1
6 6 S 1.65606 * 120.97836 * 230.51072 * 5 4 2
7 7 O 1.42094 * 104.27817 * 333.92620 * 6 5 4
8 8 O 1.42106 * 104.27580 * 206.06852 * 6 5 4
9 9 C 1.81396 * 104.45103 * 89.99836 * 6 5 4
10 10 C 1.52997 * 109.47360 * 179.97438 * 9 6 5
11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 6
12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9
13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10
14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10
15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 11
16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 11
17 17 H 1.48506 * 109.46725 * 60.00093 * 16 14 12
18 18 H 1.48505 * 109.46988 * 179.97438 * 16 14 12
19 19 H 1.48494 * 109.47116 * 300.00069 * 16 14 12
20 20 C 1.47153 * 118.04149 * 50.78078 * 5 4 2
21 21 C 1.53706 * 108.15825 * 309.16299 * 20 5 4
22 22 H 1.08997 * 109.66009 * 292.56418 * 21 20 5
23 23 C 1.53005 * 109.48483 * 172.39703 * 21 20 5
24 24 O 1.42964 * 109.51193 * 120.15415 * 2 1 3
25 25 H 1.09007 * 109.47071 * 180.09901 * 1 2 3
26 26 H 1.09000 * 109.47439 * 300.10249 * 1 2 3
27 27 H 1.08999 * 109.46870 * 60.10050 * 1 2 3
28 28 H 1.08996 * 109.68417 * 68.04760 * 4 2 1
29 29 H 1.09007 * 109.67808 * 307.49385 * 4 2 1
30 30 H 1.09002 * 109.47134 * 59.99751 * 9 6 5
31 31 H 1.08998 * 109.46953 * 300.00489 * 9 6 5
32 32 H 1.09002 * 109.47153 * 59.99820 * 10 9 6
33 33 H 1.09001 * 109.46832 * 300.00011 * 10 9 6
34 34 H 1.09001 * 109.47194 * 299.99650 * 11 10 9
35 35 H 1.08992 * 109.47399 * 59.99823 * 11 10 9
36 36 H 0.97000 * 120.00354 * 180.02562 * 15 14 12
37 37 H 1.09002 * 109.67814 * 68.93618 * 20 5 4
38 38 H 1.08988 * 109.68402 * 189.49185 * 20 5 4
39 39 H 1.09002 * 109.46839 * 300.36340 * 23 21 20
40 40 H 1.09000 * 109.47183 * 60.35701 * 23 21 20
41 41 H 1.09001 * 109.47180 * 180.36437 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8940 1.0273 0.0000
4 6 2.0420 -0.7246 -1.2501
5 7 3.5011 -0.8757 -1.1339
6 16 4.5064 -0.4180 -2.3678
7 8 3.7007 -0.5232 -3.5336
8 8 5.6604 -1.2299 -2.1991
9 6 4.8932 1.3189 -2.0160
10 6 5.8274 1.8629 -3.0987
11 6 6.1541 3.3277 -2.8015
12 6 7.0738 3.8636 -3.8684
13 1 7.3936 3.2233 -4.6771
14 6 7.5069 5.1714 -3.8119
15 7 7.1171 5.9513 -2.8273
16 14 8.6475 5.8355 -5.1338
17 1 7.9823 5.7347 -6.4577
18 1 8.9636 7.2577 -4.8462
19 1 9.9027 5.0422 -5.1488
20 6 4.0403 -1.4511 0.1085
21 6 3.4312 -0.6861 1.2944
22 1 3.8030 0.3385 1.2997
23 6 3.8211 -1.3777 2.6023
24 8 2.0074 -0.6769 1.1652
25 1 -0.3633 -1.0277 0.0018
26 1 -0.3634 0.5154 0.8890
27 1 -0.3633 0.5123 -0.8909
28 1 1.8030 -0.1389 -2.1377
29 1 1.5758 -1.7073 -1.3216
30 1 5.3818 1.3928 -1.0444
31 1 3.9718 1.9012 -2.0045
32 1 5.3392 1.7890 -4.0705
33 1 6.7487 1.2805 -3.1097
34 1 5.2330 3.9104 -2.7903
35 1 6.6424 3.4012 -1.8299
36 1 7.4215 6.8714 -2.7877
37 1 3.7718 -2.5056 0.1714
38 1 5.1251 -1.3466 0.1209
39 1 3.4507 -2.4029 2.5957
40 1 4.9067 -1.3844 2.7002
41 1 3.3838 -0.8388 3.4428
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000065562112.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:49:43
Heat of formation + Delta-G solvation = -133.865598 kcal
Electronic energy + Delta-G solvation = -22224.598290 eV
Core-core repulsion = 18845.248338 eV
Total energy + Delta-G solvation = -3379.349952 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 291.134 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.73687 -37.05171 -35.85082 -34.98266 -34.70066 -34.03168 -32.21927 -30.36893
-27.85545 -27.22751 -25.27564 -23.72706 -22.25401 -21.17481 -20.47067 -18.91391
-17.71093 -17.01660 -16.69003 -16.39530 -15.83438 -15.63019 -15.16461 -14.55214
-14.47826 -14.26911 -14.22604 -13.23734 -12.88195 -12.66036 -12.53261 -12.42452
-12.33345 -12.27868 -12.05463 -12.05384 -11.87713 -11.84002 -11.66843 -11.31301
-11.26953 -10.91972 -10.91269 -10.68200 -10.56923 -10.28718 -9.99044 -9.44302
-9.21620 -8.87824 -8.43024 -6.08072 -4.11456 0.33892 2.60005 3.30521
3.34465 3.37568 3.37729 3.93405 4.13287 4.39222 4.43879 4.46943
4.71402 4.74912 4.86511 4.96836 5.06934 5.10694 5.13294 5.13577
5.28320 5.31396 5.45818 5.46299 5.57248 5.66464 5.66592 5.83081
5.83304 5.88829 5.99205 6.18386 6.32052 6.39501 6.82582 6.98146
7.53120 7.62855 7.89416 8.29722 8.94419 9.53413 11.03077
Molecular weight = 291.13amu
Principal moments of inertia in cm(-1)
A = 0.021517 B = 0.003753 C = 0.003653
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1300.971676 B = 7458.636135 C = 7663.504262
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.072 3.928
3 H 0.066 0.934
4 C 0.093 3.907
5 N -1.009 6.009
6 S 2.596 3.404
7 O -0.957 6.957
8 O -0.957 6.957
9 C -0.608 4.608
10 C -0.106 4.106
11 C 0.031 3.969
12 C -0.528 4.528
13 H 0.058 0.942
14 C 0.059 3.941
15 N -0.895 5.895
16 Si 0.895 3.105
17 H -0.276 1.276
18 H -0.287 1.287
19 H -0.275 1.275
20 C 0.093 3.907
21 C 0.072 3.928
22 H 0.066 0.934
23 C -0.144 4.144
24 O -0.373 6.373
25 H 0.065 0.935
26 H 0.067 0.933
27 H 0.076 0.924
28 H 0.100 0.900
29 H 0.078 0.922
30 H 0.126 0.874
31 H 0.126 0.874
32 H 0.066 0.934
33 H 0.066 0.934
34 H 0.020 0.980
35 H 0.020 0.980
36 H 0.262 0.738
37 H 0.079 0.921
38 H 0.100 0.900
39 H 0.065 0.935
40 H 0.076 0.924
41 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.711 -13.691 9.947 20.580
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.013 3.987
3 H 0.084 0.916
4 C -0.032 4.032
5 N -0.845 5.845
6 S 2.694 3.306
7 O -0.948 6.948
8 O -0.948 6.948
9 C -0.740 4.740
10 C -0.145 4.145
11 C -0.007 4.007
12 C -0.566 4.566
13 H 0.076 0.924
14 C -0.143 4.143
15 N -0.534 5.534
16 Si 0.722 3.278
17 H -0.201 1.201
18 H -0.212 1.212
19 H -0.201 1.201
20 C -0.032 4.032
21 C 0.012 3.988
22 H 0.084 0.916
23 C -0.202 4.202
24 O -0.293 6.293
25 H 0.084 0.916
26 H 0.086 0.914
27 H 0.094 0.906
28 H 0.118 0.882
29 H 0.097 0.903
30 H 0.145 0.855
31 H 0.145 0.855
32 H 0.084 0.916
33 H 0.084 0.916
34 H 0.039 0.961
35 H 0.039 0.961
36 H 0.072 0.928
37 H 0.097 0.903
38 H 0.118 0.882
39 H 0.084 0.916
40 H 0.094 0.906
41 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -11.544 -14.205 9.427 20.589
hybrid contribution 0.713 1.192 -0.417 1.450
sum -10.831 -13.014 9.010 19.179
Atomic orbital electron populations
1.21741 0.92252 1.03207 1.02993 1.22500 0.95493 0.95527 0.85229
0.91596 1.22133 0.79588 1.02374 0.99136 1.58053 1.16435 1.77682
1.32344 1.05570 0.73537 0.78128 0.73366 1.93561 1.68396 1.86832
1.45981 1.93563 1.50075 1.65695 1.85437 1.30607 1.10574 1.22378
1.10466 1.21511 0.96270 1.02315 0.94405 1.19056 0.96972 0.87298
0.97366 1.21211 1.29022 0.96573 1.09810 0.92412 1.25013 0.96417
0.96963 0.95892 1.69942 1.44965 1.07097 1.31417 0.86610 0.81232
0.77850 0.82071 1.20103 1.21214 1.20098 1.22215 0.99483 0.98453
0.83065 1.22586 0.81747 0.99351 0.95072 0.91562 1.21744 1.01779
1.01284 0.95397 1.87936 1.20672 1.77517 1.43136 0.91578 0.91428
0.90560 0.88216 0.90324 0.85521 0.85523 0.91560 0.91561 0.96138
0.96136 0.92815 0.90297 0.88205 0.91585 0.90561 0.91432
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.08 9.57 37.15 0.36 -0.73 16
2 C 0.07 0.69 3.40 -26.58 -0.09 0.60 16
3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
4 C 0.09 0.98 5.79 -3.53 -0.02 0.96 16
5 N -1.01 -12.12 3.27 -112.83 -0.37 -12.49 16
6 S 2.60 39.07 5.42 -107.50 -0.58 38.48 16
7 O -0.96 -16.81 16.81 -57.54 -0.97 -17.78 16
8 O -0.96 -16.81 16.80 -57.54 -0.97 -17.77 16
9 C -0.61 -9.35 6.18 37.16 0.23 -9.12 16
10 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16
11 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16
12 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16
13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16
14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
15 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16
16 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16
17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
20 C 0.09 0.98 5.82 -3.32 -0.02 0.96 16
21 C 0.07 0.69 3.41 -26.36 -0.09 0.60 16
22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
23 C -0.14 -1.08 9.57 37.16 0.36 -0.73 16
24 O -0.37 -4.00 10.03 -35.23 -0.35 -4.35 16
25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
28 H 0.10 1.00 7.23 -51.93 -0.38 0.63 16
29 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16
30 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16
31 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16
32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16
33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16
34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16
37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.10 1.00 7.22 -51.94 -0.37 0.63 16
39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
LS Contribution 345.67 15.07 5.21 5.21
Total: -1.00 -34.35 345.67 -9.34 -43.68
By element:
Atomic # 1 Polarization: 3.94 SS G_CDS: -7.06 Total: -3.12 kcal
Atomic # 6 Polarization: -22.66 SS G_CDS: 0.03 Total: -22.63 kcal
Atomic # 7 Polarization: -38.55 SS G_CDS: 0.37 Total: -38.18 kcal
Atomic # 8 Polarization: -37.61 SS G_CDS: -2.29 Total: -39.90 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal
Atomic # 16 Polarization: 39.07 SS G_CDS: -0.58 Total: 38.48 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -34.35 -9.34 -43.68 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000065562112.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.184 kcal
(2) G-P(sol) polarization free energy of solvation -34.345 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.529 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.866 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds