Wall clock time and date at job start Tue Mar 31 2020 02:57:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46502 * 109.47224 * 2 1
4 4 C 1.37091 * 120.00304 * 84.75252 * 3 2 1
5 5 H 1.08002 * 120.00010 * 185.62628 * 4 3 2
6 6 C 1.38946 * 120.00147 * 5.62497 * 4 3 2
7 7 N 1.31415 * 120.00245 * 329.80736 * 6 4 3
8 8 Si 1.86805 * 120.00187 * 149.80618 * 6 4 3
9 9 H 1.48497 * 109.46872 * 0.02562 * 8 6 4
10 10 H 1.48502 * 109.46928 * 120.00335 * 8 6 4
11 11 H 1.48495 * 109.47194 * 240.00176 * 8 6 4
12 12 C 1.34777 * 119.99431 * 264.75184 * 3 2 1
13 13 O 1.21290 * 119.99557 * 183.76465 * 12 3 2
14 14 C 1.50700 * 120.00431 * 3.76215 * 12 3 2
15 15 H 1.08996 * 109.69958 * 24.68628 * 14 12 3
16 16 O 1.43175 * 109.70666 * 145.26323 * 14 12 3
17 17 C 1.36109 * 116.71485 * 73.55982 * 16 14 12
18 18 C 1.38706 * 119.39672 * 197.05417 * 17 16 14
19 19 C 1.38197 * 120.06630 * 180.20093 * 18 17 16
20 20 C 1.38254 * 120.11428 * 359.97107 * 19 18 17
21 21 C 1.38198 * 120.11319 * 359.95188 * 20 19 18
22 22 C 1.38707 * 120.06610 * 0.02562 * 21 20 19
23 23 O 1.36103 * 119.39143 * 180.14037 * 22 21 20
24 24 C 1.43259 * 116.71845 * 197.17974 * 23 22 21
25 25 H 1.08998 * 109.68676 * 73.43015 * 24 23 22
26 26 C 1.52996 * 109.77415 * 194.08550 * 24 23 22
27 27 H 1.09001 * 109.46893 * 59.99637 * 1 2 3
28 28 H 1.08993 * 109.47196 * 180.02562 * 1 2 3
29 29 H 1.09007 * 109.46789 * 300.00715 * 1 2 3
30 30 H 1.08999 * 109.47058 * 239.99252 * 2 1 3
31 31 H 1.09000 * 109.46581 * 119.99649 * 2 1 3
32 32 H 0.96998 * 120.00214 * 179.97438 * 7 6 4
33 33 H 1.07994 * 119.96654 * 0.13561 * 18 17 16
34 34 H 1.07996 * 119.94216 * 179.97438 * 19 18 17
35 35 H 1.07999 * 119.94328 * 179.97438 * 20 19 18
36 36 H 1.08003 * 119.96808 * 180.02562 * 21 20 19
37 37 H 1.09000 * 109.46879 * 181.77771 * 26 24 23
38 38 H 1.08996 * 109.47646 * 301.77854 * 26 24 23
39 39 H 1.08997 * 109.47501 * 61.77848 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1446 2.0637 1.1822
5 1 2.4170 3.1088 1.1760
6 6 1.9219 1.4110 2.3885
7 7 1.0677 0.4141 2.4483
8 14 2.8368 1.9504 3.9252
9 1 3.7337 3.0866 3.5940
10 1 1.8596 2.3767 4.9590
11 1 3.6438 0.8171 4.4443
12 6 2.3437 1.9809 -1.1624
13 8 2.8122 3.0996 -1.1572
14 6 2.1253 1.2614 -2.4684
15 1 1.3396 0.5153 -2.3500
16 8 1.7496 2.2017 -3.4807
17 6 2.7327 3.0138 -3.9567
18 6 2.3888 4.1615 -4.6555
19 6 3.3758 4.9938 -5.1485
20 6 4.7082 4.6853 -4.9463
21 6 5.0577 3.5441 -4.2495
22 6 4.0720 2.7048 -3.7515
23 8 4.4316 1.5861 -3.0648
24 6 3.4272 0.5769 -2.9063
25 1 3.2712 0.0620 -3.8543
26 6 3.8665 -0.4274 -1.8390
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3633 0.5140 0.8900
30 1 1.8934 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 0.9125 -0.0418 3.2903
33 1 1.3488 4.4045 -4.8154
34 1 3.1058 5.8867 -5.6927
35 1 5.4773 5.3374 -5.3331
36 1 6.0993 3.3056 -4.0924
37 1 3.1137 -1.2100 -1.7448
38 1 4.8186 -0.8721 -2.1283
39 1 3.9800 0.0843 -0.8833
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000068915860.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:57:24
Heat of formation + Delta-G solvation = -50.770298 kcal
Electronic energy + Delta-G solvation = -24748.127116 eV
Core-core repulsion = 21236.936495 eV
Total energy + Delta-G solvation = -3511.190620 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 291.130 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.19372 -38.59522 -37.14150 -36.79211 -35.09280 -32.93569 -31.53952 -30.30518
-29.52029 -28.72785 -27.13798 -24.89675 -23.30862 -22.43183 -22.10078 -21.27176
-18.73315 -18.35663 -17.47456 -16.79401 -16.38504 -15.92873 -15.26839 -14.75808
-14.53072 -14.31417 -14.16852 -13.55834 -13.47613 -13.38114 -13.22801 -13.02810
-12.51277 -12.33888 -12.04209 -11.87418 -11.61771 -11.50505 -11.36952 -11.14333
-11.08065 -10.79841 -10.67879 -10.39914 -10.25620 -9.97670 -9.79057 -8.85394
-8.65135 -8.17757 -7.92918 -7.48851 -6.49207 -3.81790 1.67559 1.73841
3.04939 3.22967 3.30599 3.32944 3.41124 3.90659 4.03866 4.14150
4.50706 4.70522 4.93946 5.03395 5.07001 5.20752 5.27121 5.41982
5.48371 5.58604 5.65049 5.75232 5.81859 5.85731 6.07411 6.21215
6.36446 6.46020 6.46104 6.53733 6.60496 6.67814 6.77229 6.99303
7.17487 7.32135 7.40709 7.67132 7.83083 7.98409 8.40844 9.08567
9.31688 9.86160 10.49347
Molecular weight = 291.13amu
Principal moments of inertia in cm(-1)
A = 0.021591 B = 0.005623 C = 0.005258
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.540422 B = 4978.460552 C = 5324.060207
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.102 3.898
3 N -0.430 5.430
4 C -0.308 4.308
5 H 0.106 0.894
6 C 0.037 3.963
7 N -0.854 5.854
8 Si 0.910 3.090
9 H -0.267 1.267
10 H -0.283 1.283
11 H -0.279 1.279
12 C 0.422 3.578
13 O -0.569 6.569
14 C 0.040 3.960
15 H 0.135 0.865
16 O -0.291 6.291
17 C 0.076 3.924
18 C -0.118 4.118
19 C -0.125 4.125
20 C -0.124 4.124
21 C -0.122 4.122
22 C 0.080 3.920
23 O -0.297 6.297
24 C 0.066 3.934
25 H 0.083 0.917
26 C -0.155 4.155
27 H 0.021 0.979
28 H 0.039 0.961
29 H 0.096 0.904
30 H 0.041 0.959
31 H 0.106 0.894
32 H 0.268 0.732
33 H 0.128 0.872
34 H 0.125 0.875
35 H 0.125 0.875
36 H 0.127 0.873
37 H 0.086 0.914
38 H 0.071 0.929
39 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.788 -2.464 -10.783 11.406
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.021 4.021
3 N -0.149 5.149
4 C -0.435 4.435
5 H 0.124 0.876
6 C -0.167 4.167
7 N -0.493 5.493
8 Si 0.736 3.264
9 H -0.191 1.191
10 H -0.209 1.209
11 H -0.205 1.205
12 C 0.208 3.792
13 O -0.453 6.453
14 C -0.021 4.021
15 H 0.152 0.848
16 O -0.204 6.204
17 C 0.031 3.969
18 C -0.136 4.136
19 C -0.144 4.144
20 C -0.143 4.143
21 C -0.141 4.141
22 C 0.034 3.966
23 O -0.212 6.212
24 C 0.009 3.991
25 H 0.101 0.899
26 C -0.212 4.212
27 H 0.040 0.960
28 H 0.058 0.942
29 H 0.115 0.885
30 H 0.059 0.941
31 H 0.124 0.876
32 H 0.078 0.922
33 H 0.146 0.854
34 H 0.143 0.857
35 H 0.143 0.857
36 H 0.145 0.855
37 H 0.105 0.895
38 H 0.090 0.910
39 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 2.910 -2.107 -10.576 11.170
hybrid contribution 0.068 -0.077 1.024 1.029
sum 2.978 -2.183 -9.553 10.242
Atomic orbital electron populations
1.22150 0.96425 0.99940 1.02246 1.22054 0.95073 0.83821 1.01181
1.43843 1.54297 1.11666 1.05119 1.19697 1.45222 0.96973 0.81584
0.87623 1.25172 0.95789 0.96517 0.99173 1.70209 1.28057 1.23972
1.27103 0.86131 0.80203 0.79046 0.80991 1.19125 1.20892 1.20458
1.19734 0.87010 0.88027 0.84383 1.90572 1.48968 1.19846 1.85894
1.23310 0.99166 0.91313 0.88271 0.84793 1.86316 1.34023 1.47970
1.52136 1.18805 0.86640 0.92944 0.98516 1.20334 1.00275 0.91944
1.01094 1.20743 0.92404 0.99436 1.01784 1.20738 0.96246 0.96799
1.00489 1.20316 0.98203 0.95367 1.00186 1.18801 0.92037 0.89371
0.96372 1.86278 1.38037 1.25827 1.71032 1.23012 0.87544 0.88394
1.00169 0.89925 1.22086 1.02415 0.97587 0.99114 0.95983 0.94224
0.88506 0.94076 0.87618 0.92171 0.85429 0.85736 0.85748 0.85457
0.89503 0.91038 0.89767
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.01 9.51 37.16 0.35 -2.66 16
2 C 0.10 2.11 4.13 -4.04 -0.02 2.10 16
3 N -0.43 -10.58 2.25 -114.81 -0.26 -10.84 16
4 C -0.31 -8.35 9.39 -14.94 -0.14 -8.49 16
5 H 0.11 3.12 7.35 -52.49 -0.39 2.73 16
6 C 0.04 0.93 5.01 -17.47 -0.09 0.85 16
7 N -0.85 -20.74 8.26 55.50 0.46 -20.28 16
8 Si 0.91 20.05 29.65 -169.99 -5.04 15.01 16
9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
12 C 0.42 10.40 5.53 -10.99 -0.06 10.34 16
13 O -0.57 -16.29 14.41 -14.34 -0.21 -16.50 16
14 C 0.04 0.79 2.88 -27.64 -0.08 0.71 16
15 H 0.13 2.35 5.84 -51.93 -0.30 2.05 16
16 O -0.29 -6.05 10.12 -45.58 -0.46 -6.51 16
17 C 0.08 1.53 5.39 -39.14 -0.21 1.32 16
18 C -0.12 -2.03 9.96 -39.42 -0.39 -2.43 16
19 C -0.13 -1.84 10.04 -39.59 -0.40 -2.23 16
20 C -0.12 -1.81 10.04 -39.59 -0.40 -2.21 16
21 C -0.12 -2.06 9.96 -39.42 -0.39 -2.46 16
22 C 0.08 1.58 5.63 -39.14 -0.22 1.36 16
23 O -0.30 -5.95 9.64 -36.82 -0.36 -6.31 16
24 C 0.07 1.15 3.35 -26.49 -0.09 1.06 16
25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
26 C -0.16 -2.38 8.10 37.16 0.30 -2.08 16
27 H 0.02 0.42 7.67 -51.93 -0.40 0.02 16
28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.10 2.26 6.24 -51.92 -0.32 1.94 16
30 H 0.04 0.71 3.08 -51.93 -0.16 0.55 16
31 H 0.11 2.37 5.86 -51.93 -0.30 2.06 16
32 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16
33 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16
34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16
35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16
36 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16
37 H 0.09 1.10 6.42 -51.93 -0.33 0.77 16
38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
39 H 0.08 1.58 6.25 -51.93 -0.32 1.26 16
LS Contribution 308.25 15.07 4.65 4.65
Total: -1.00 -31.29 308.25 -7.68 -38.96
By element:
Atomic # 1 Polarization: 11.25 SS G_CDS: -4.63 Total: 6.62 kcal
Atomic # 6 Polarization: -2.98 SS G_CDS: -1.83 Total: -4.81 kcal
Atomic # 7 Polarization: -31.32 SS G_CDS: 0.20 Total: -31.12 kcal
Atomic # 8 Polarization: -28.29 SS G_CDS: -1.02 Total: -29.31 kcal
Atomic # 14 Polarization: 20.05 SS G_CDS: -5.04 Total: 15.01 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -31.29 -7.68 -38.96 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068915860.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.806 kcal
(2) G-P(sol) polarization free energy of solvation -31.288 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.770 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds