Wall clock time and date at job start Tue Mar 31 2020 02:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46797 * 2 1 4 4 C 1.37093 * 119.99915 * 87.75835 * 3 2 1 5 5 H 1.08005 * 119.99389 * 166.47512 * 4 3 2 6 6 C 1.38945 * 120.00291 * 346.46918 * 4 3 2 7 7 N 1.31404 * 120.00204 * 1.58730 * 6 4 3 8 8 Si 1.86801 * 119.99704 * 181.58160 * 6 4 3 9 9 H 1.48503 * 109.47008 * 90.00466 * 8 6 4 10 10 H 1.48509 * 109.46916 * 210.00369 * 8 6 4 11 11 H 1.48494 * 109.47386 * 330.00228 * 8 6 4 12 12 C 1.34779 * 119.99338 * 267.75742 * 3 2 1 13 13 O 1.21290 * 119.99738 * 183.20297 * 12 3 2 14 14 C 1.50700 * 120.00202 * 3.20437 * 12 3 2 15 15 H 1.08991 * 109.70739 * 24.08329 * 14 12 3 16 16 O 1.43172 * 109.70624 * 144.71233 * 14 12 3 17 17 C 1.36106 * 116.71551 * 165.84305 * 16 14 12 18 18 C 1.38706 * 119.39827 * 163.12097 * 17 16 14 19 19 C 1.38198 * 120.06777 * 179.97438 * 18 17 16 20 20 C 1.38249 * 120.11199 * 359.71818 * 19 18 17 21 21 C 1.38196 * 120.11598 * 0.17595 * 20 19 18 22 22 C 1.38707 * 120.06391 * 0.02562 * 21 20 19 23 23 O 1.36109 * 119.39299 * 179.85897 * 22 21 20 24 24 C 1.43177 * 116.69511 * 162.78875 * 23 22 21 25 25 H 1.09012 * 109.70868 * 286.58131 * 24 23 22 26 26 C 1.52991 * 109.71227 * 165.99040 * 24 23 22 27 27 H 1.09000 * 109.47187 * 65.98429 * 1 2 3 28 28 H 1.09003 * 109.46986 * 185.98150 * 1 2 3 29 29 H 1.08997 * 109.47423 * 305.97756 * 1 2 3 30 30 H 1.08998 * 109.47050 * 239.99670 * 2 1 3 31 31 H 1.09005 * 109.47116 * 119.99343 * 2 1 3 32 32 H 0.96996 * 120.00488 * 179.97438 * 7 6 4 33 33 H 1.08002 * 119.96890 * 359.62015 * 18 17 16 34 34 H 1.07994 * 119.94164 * 179.85709 * 19 18 17 35 35 H 1.08004 * 119.94311 * 180.19954 * 20 19 18 36 36 H 1.07995 * 119.97021 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47485 * 62.48789 * 26 24 23 38 38 H 1.09010 * 109.47045 * 182.48567 * 26 24 23 39 39 H 1.08994 * 109.47306 * 302.48278 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2030 2.0430 1.1864 5 1 2.7610 2.9675 1.2078 6 6 1.6721 1.5246 2.3611 7 7 1.0198 0.3841 2.3401 8 14 1.8859 2.4488 3.9703 9 1 0.7465 3.3822 4.1601 10 1 1.9255 1.4806 5.0957 11 1 3.1554 3.2183 3.9343 12 6 2.2859 2.0013 -1.1664 13 8 2.7450 3.1240 -1.1650 14 6 2.0147 1.2998 -2.4723 15 1 1.2489 0.5377 -2.3280 16 8 1.5738 2.2499 -3.4483 17 6 1.5719 1.8384 -4.7456 18 6 0.8436 2.5527 -5.6855 19 6 0.8324 2.1474 -7.0067 20 6 1.5514 1.0328 -7.3964 21 6 2.2809 0.3179 -6.4655 22 6 2.2931 0.7168 -5.1371 23 8 3.0139 0.0010 -4.2312 24 6 3.3043 0.6458 -2.9863 25 1 4.0685 1.4084 -3.1367 26 6 3.7993 -0.3879 -1.9729 27 1 -0.3633 0.4182 -0.9387 28 1 -0.3633 -1.0221 0.1071 29 1 -0.3634 0.6037 0.8316 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 0.6495 0.0219 3.1602 33 1 0.2801 3.4231 -5.3835 34 1 0.2628 2.7038 -7.7363 35 1 1.5434 0.7204 -8.4302 36 1 2.8421 -0.5522 -6.7726 37 1 4.7272 -0.8331 -2.3317 38 1 3.9771 0.0994 -1.0141 39 1 3.0463 -1.1664 -1.8506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068915865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:27 Heat of formation + Delta-G solvation = -51.903023 kcal Electronic energy + Delta-G solvation = -24297.062837 eV Core-core repulsion = 20785.823098 eV Total energy + Delta-G solvation = -3511.239739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22603 -38.88391 -37.41747 -36.93253 -35.22838 -32.94570 -31.52393 -30.54456 -29.54772 -28.94206 -27.22160 -24.88014 -23.45740 -22.64323 -22.12250 -21.02733 -19.10073 -18.48456 -17.69127 -16.94580 -16.51773 -15.86706 -15.32959 -14.93202 -14.59698 -14.43886 -14.24403 -13.95138 -13.71561 -13.53706 -13.23711 -12.99684 -12.58103 -12.32992 -12.20369 -11.87054 -11.76914 -11.61137 -11.41647 -11.13235 -11.11303 -10.86110 -10.67139 -10.40088 -10.19633 -10.12251 -9.89307 -8.98312 -8.56744 -8.52753 -7.87902 -7.86184 -6.32805 -3.98263 1.38227 1.43024 2.93401 3.14575 3.19483 3.21757 3.29500 3.73118 3.82677 4.06737 4.46325 4.69514 4.80386 4.99853 5.02543 5.07070 5.18200 5.32788 5.38925 5.50594 5.52140 5.61682 5.75697 5.89961 6.00001 6.12958 6.21044 6.30167 6.36645 6.51658 6.54608 6.61566 6.72848 6.75524 7.15407 7.27391 7.44739 7.62317 7.66582 7.94672 8.37721 9.02224 9.25128 9.76815 10.55435 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029905 B = 0.004576 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.058184 B = 6117.003030 C = 6314.480915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.103 3.897 3 N -0.429 5.429 4 C -0.296 4.296 5 H 0.105 0.895 6 C 0.026 3.974 7 N -0.876 5.876 8 Si 0.934 3.066 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.451 3.549 13 O -0.571 6.571 14 C 0.048 3.952 15 H 0.097 0.903 16 O -0.282 6.282 17 C 0.061 3.939 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.117 4.117 22 C 0.049 3.951 23 O -0.306 6.306 24 C 0.065 3.935 25 H 0.089 0.911 26 C -0.150 4.150 27 H 0.013 0.987 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.122 0.878 32 H 0.267 0.733 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -4.426 -11.983 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 N -0.148 5.148 4 C -0.423 4.423 5 H 0.123 0.877 6 C -0.175 4.175 7 N -0.518 5.518 8 Si 0.761 3.239 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.236 3.764 13 O -0.454 6.454 14 C -0.013 4.013 15 H 0.114 0.886 16 O -0.195 6.195 17 C 0.014 3.986 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.135 4.135 22 C 0.004 3.996 23 O -0.221 6.221 24 C 0.008 3.992 25 H 0.107 0.893 26 C -0.207 4.207 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.356 -4.007 -11.711 12.383 hybrid contribution -0.135 0.226 0.857 0.896 sum 0.221 -3.781 -10.854 11.496 Atomic orbital electron populations 1.22136 0.96630 1.00730 1.00267 1.22105 0.95001 0.83220 1.01625 1.43740 1.55110 1.11912 1.04059 1.19821 1.32214 1.07286 0.83018 0.87735 1.25316 0.95773 0.96572 0.99850 1.70115 1.35637 1.17973 1.28055 0.85785 0.79056 0.78867 0.80188 1.20296 1.20816 1.19419 1.18917 0.86997 0.87075 0.83363 1.90552 1.49200 1.19339 1.86349 1.23179 0.97026 0.91713 0.89334 0.88589 1.86394 1.81669 1.39272 1.12131 1.19158 0.98080 0.95906 0.85409 1.20461 0.99936 1.01303 0.91936 1.20850 1.00495 0.97454 0.94918 1.20827 0.98477 0.96059 0.99053 1.20397 1.02150 1.01788 0.89192 1.19002 0.95766 0.94264 0.90581 1.86278 1.69104 1.41280 1.25445 1.23068 0.96295 0.96645 0.83233 0.89335 1.22041 1.02082 0.98587 0.97952 0.96806 0.94078 0.89204 0.94487 0.86053 0.92187 0.84852 0.85352 0.85424 0.85085 0.90998 0.88789 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.27 37.16 0.34 -2.59 16 2 C 0.10 2.20 4.23 -4.04 -0.02 2.19 16 3 N -0.43 -10.51 2.28 -114.81 -0.26 -10.78 16 4 C -0.30 -7.82 9.49 -14.94 -0.14 -7.96 16 5 H 0.10 2.92 7.23 -52.48 -0.38 2.54 16 6 C 0.03 0.65 5.32 -17.47 -0.09 0.56 16 7 N -0.88 -21.08 7.38 55.50 0.41 -20.67 16 8 Si 0.93 19.84 29.55 -169.99 -5.02 14.82 16 9 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 12 C 0.45 11.12 5.86 -10.98 -0.06 11.06 16 13 O -0.57 -16.20 16.44 -11.05 -0.18 -16.38 16 14 C 0.05 1.00 2.51 -27.65 -0.07 0.93 16 15 H 0.10 1.93 5.53 -51.93 -0.29 1.64 16 16 O -0.28 -6.05 9.84 -45.52 -0.45 -6.50 16 17 C 0.06 1.10 6.49 -39.14 -0.25 0.84 16 18 C -0.12 -1.77 9.96 -39.42 -0.39 -2.16 16 19 C -0.12 -1.42 10.04 -39.59 -0.40 -1.82 16 20 C -0.13 -1.44 10.04 -39.59 -0.40 -1.84 16 21 C -0.12 -1.57 9.96 -39.42 -0.39 -1.97 16 22 C 0.05 0.83 6.49 -39.14 -0.25 0.57 16 23 O -0.31 -5.30 10.07 -32.87 -0.33 -5.63 16 24 C 0.06 1.17 3.16 -26.50 -0.08 1.09 16 25 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 26 C -0.15 -2.37 8.10 37.15 0.30 -2.06 16 27 H 0.01 0.27 7.34 -51.93 -0.38 -0.11 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 2.14 6.21 -51.93 -0.32 1.81 16 30 H 0.04 0.69 3.12 -51.93 -0.16 0.53 16 31 H 0.12 2.77 5.91 -51.93 -0.31 2.46 16 32 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 33 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.66 6.46 -51.92 -0.34 1.32 16 39 H 0.08 1.15 6.37 -51.93 -0.33 0.82 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -29.54 310.93 -7.66 -37.21 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.60 Total: 6.41 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.91 Total: -3.17 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.15 Total: -31.45 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.96 Total: -28.51 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.54 -7.66 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.696 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds