Wall clock time and date at job start Tue Mar 31 2020 02:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46797 * 2 1 4 4 C 1.37093 * 119.99915 * 87.75835 * 3 2 1 5 5 H 1.08005 * 119.99389 * 166.47512 * 4 3 2 6 6 C 1.38945 * 120.00291 * 346.46918 * 4 3 2 7 7 N 1.31404 * 120.00204 * 1.58730 * 6 4 3 8 8 Si 1.86801 * 119.99704 * 181.58160 * 6 4 3 9 9 H 1.48503 * 109.47008 * 90.00466 * 8 6 4 10 10 H 1.48509 * 109.46916 * 210.00369 * 8 6 4 11 11 H 1.48494 * 109.47386 * 330.00228 * 8 6 4 12 12 C 1.34779 * 119.99338 * 267.75742 * 3 2 1 13 13 O 1.21290 * 119.99738 * 183.20297 * 12 3 2 14 14 C 1.50700 * 120.00202 * 3.20437 * 12 3 2 15 15 H 1.08991 * 109.70739 * 24.08329 * 14 12 3 16 16 O 1.43172 * 109.70624 * 144.71233 * 14 12 3 17 17 C 1.36106 * 116.71551 * 165.84305 * 16 14 12 18 18 C 1.38706 * 119.39827 * 163.12097 * 17 16 14 19 19 C 1.38198 * 120.06777 * 179.97438 * 18 17 16 20 20 C 1.38249 * 120.11199 * 359.71818 * 19 18 17 21 21 C 1.38196 * 120.11598 * 0.17595 * 20 19 18 22 22 C 1.38707 * 120.06391 * 0.02562 * 21 20 19 23 23 O 1.36109 * 119.39299 * 179.85897 * 22 21 20 24 24 C 1.43177 * 116.69511 * 162.78875 * 23 22 21 25 25 H 1.09012 * 109.70868 * 286.58131 * 24 23 22 26 26 C 1.52991 * 109.71227 * 165.99040 * 24 23 22 27 27 H 1.09000 * 109.47187 * 65.98429 * 1 2 3 28 28 H 1.09003 * 109.46986 * 185.98150 * 1 2 3 29 29 H 1.08997 * 109.47423 * 305.97756 * 1 2 3 30 30 H 1.08998 * 109.47050 * 239.99670 * 2 1 3 31 31 H 1.09005 * 109.47116 * 119.99343 * 2 1 3 32 32 H 0.96996 * 120.00488 * 179.97438 * 7 6 4 33 33 H 1.08002 * 119.96890 * 359.62015 * 18 17 16 34 34 H 1.07994 * 119.94164 * 179.85709 * 19 18 17 35 35 H 1.08004 * 119.94311 * 180.19954 * 20 19 18 36 36 H 1.07995 * 119.97021 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47485 * 62.48789 * 26 24 23 38 38 H 1.09010 * 109.47045 * 182.48567 * 26 24 23 39 39 H 1.08994 * 109.47306 * 302.48278 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2030 2.0430 1.1864 5 1 2.7610 2.9675 1.2078 6 6 1.6721 1.5246 2.3611 7 7 1.0198 0.3841 2.3401 8 14 1.8859 2.4488 3.9703 9 1 0.7465 3.3822 4.1601 10 1 1.9255 1.4806 5.0957 11 1 3.1554 3.2183 3.9343 12 6 2.2859 2.0013 -1.1664 13 8 2.7450 3.1240 -1.1650 14 6 2.0147 1.2998 -2.4723 15 1 1.2489 0.5377 -2.3280 16 8 1.5738 2.2499 -3.4483 17 6 1.5719 1.8384 -4.7456 18 6 0.8436 2.5527 -5.6855 19 6 0.8324 2.1474 -7.0067 20 6 1.5514 1.0328 -7.3964 21 6 2.2809 0.3179 -6.4655 22 6 2.2931 0.7168 -5.1371 23 8 3.0139 0.0010 -4.2312 24 6 3.3043 0.6458 -2.9863 25 1 4.0685 1.4084 -3.1367 26 6 3.7993 -0.3879 -1.9729 27 1 -0.3633 0.4182 -0.9387 28 1 -0.3633 -1.0221 0.1071 29 1 -0.3634 0.6037 0.8316 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 0.6495 0.0219 3.1602 33 1 0.2801 3.4231 -5.3835 34 1 0.2628 2.7038 -7.7363 35 1 1.5434 0.7204 -8.4302 36 1 2.8421 -0.5522 -6.7726 37 1 4.7272 -0.8331 -2.3317 38 1 3.9771 0.0994 -1.0141 39 1 3.0463 -1.1664 -1.8506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068915865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:27 Heat of formation + Delta-G solvation = -68.639205 kcal Electronic energy + Delta-G solvation = -24297.788572 eV Core-core repulsion = 20785.823098 eV Total energy + Delta-G solvation = -3511.965474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.61004 -40.58271 -38.65965 -38.36733 -37.16828 -34.50560 -33.27942 -31.69589 -31.34442 -30.11148 -28.78708 -26.71299 -24.77058 -24.06821 -23.60000 -22.48167 -20.69913 -19.86796 -19.26189 -18.76988 -17.90838 -17.42602 -16.72602 -16.56178 -16.04372 -15.91709 -15.62505 -15.52870 -15.25359 -14.85811 -14.84895 -14.64890 -14.09460 -13.68793 -13.65898 -13.48381 -13.28426 -12.86728 -12.83454 -12.78925 -12.70964 -12.33345 -12.21505 -12.08072 -11.98952 -11.66564 -11.43044 -10.87116 -10.50137 -9.78594 -9.65296 -9.10886 -8.24649 -5.98850 0.29572 0.30614 1.24653 1.41924 1.51047 1.56592 1.91878 2.05005 2.32592 2.73039 2.92088 3.01172 3.17801 3.52274 3.57052 3.63785 3.86771 4.07929 4.13389 4.24550 4.30388 4.43289 4.49284 4.62029 4.66917 4.81359 4.84390 4.90904 5.02544 5.08573 5.21434 5.21890 5.35686 5.49717 5.52523 5.72699 5.81895 5.85072 6.02144 6.33738 6.45899 7.06575 7.32183 7.84758 8.60846 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029905 B = 0.004576 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.058184 B = 6117.003030 C = 6314.480915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.105 3.895 3 N -0.429 5.429 4 C -0.340 4.340 5 H 0.075 0.925 6 C 0.005 3.995 7 N -0.872 5.872 8 Si 0.993 3.007 9 H -0.278 1.278 10 H -0.264 1.264 11 H -0.276 1.276 12 C 0.437 3.563 13 O -0.624 6.624 14 C 0.058 3.942 15 H 0.100 0.900 16 O -0.317 6.317 17 C 0.017 3.983 18 C -0.131 4.131 19 C -0.106 4.106 20 C -0.108 4.108 21 C -0.115 4.115 22 C 0.020 3.980 23 O -0.303 6.303 24 C 0.073 3.927 25 H 0.070 0.930 26 C -0.143 4.143 27 H 0.014 0.986 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.275 0.725 33 H 0.133 0.867 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.156 0.844 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 -6.359 -14.001 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.016 4.016 3 N -0.147 5.147 4 C -0.467 4.467 5 H 0.093 0.907 6 C -0.197 4.197 7 N -0.511 5.511 8 Si 0.817 3.183 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.201 1.201 12 C 0.225 3.775 13 O -0.512 6.512 14 C -0.002 4.002 15 H 0.118 0.882 16 O -0.232 6.232 17 C -0.028 4.028 18 C -0.150 4.150 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.024 4.024 23 O -0.218 6.218 24 C 0.015 3.985 25 H 0.088 0.912 26 C -0.200 4.200 27 H 0.033 0.967 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.186 0.814 35 H 0.191 0.809 36 H 0.173 0.827 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.319 -6.001 -13.741 14.998 hybrid contribution -0.015 0.818 1.345 1.574 sum -0.334 -5.183 -12.396 13.441 Atomic orbital electron populations 1.22010 0.96120 1.01770 0.99068 1.22176 0.95307 0.81702 1.02454 1.43910 1.54266 1.12838 1.03692 1.19716 1.34604 1.07652 0.84776 0.90710 1.25946 0.94788 0.97197 1.01790 1.70190 1.34024 1.17738 1.29117 0.84939 0.78412 0.77979 0.77005 1.20381 1.18848 1.20111 1.19557 0.86415 0.86776 0.84743 1.90490 1.51651 1.21716 1.87357 1.22910 0.98483 0.91067 0.87722 0.88225 1.86308 1.82630 1.40303 1.13931 1.19627 1.00814 0.98001 0.84335 1.20771 0.99866 1.01333 0.93031 1.21344 0.99683 0.97422 0.93904 1.21405 0.95918 0.94569 1.00683 1.20839 1.02122 1.02534 0.87816 1.19421 0.96561 0.94621 0.91820 1.86254 1.69508 1.41117 1.24971 1.22905 0.94406 0.96834 0.84349 0.91183 1.21990 1.03823 0.97936 0.96224 0.96682 0.91364 0.92061 0.91629 0.87195 0.91410 0.84870 0.81442 0.80860 0.82667 0.88104 0.91062 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 9.27 71.98 0.67 -4.83 16 2 C 0.11 4.54 4.23 86.38 0.37 4.91 16 3 N -0.43 -22.02 2.28 -635.52 -1.45 -23.47 16 4 C -0.34 -18.86 9.49 84.04 0.80 -18.06 16 5 H 0.07 4.51 7.23 -2.91 -0.02 4.48 16 6 C 0.01 0.25 5.32 84.93 0.45 0.70 16 7 N -0.87 -41.69 7.38 21.66 0.16 -41.53 16 8 Si 0.99 40.99 29.55 68.60 2.03 43.01 16 9 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 C 0.44 22.94 5.86 87.66 0.51 23.46 16 13 O -0.62 -38.22 16.44 12.81 0.21 -38.01 16 14 C 0.06 2.54 2.51 30.00 0.08 2.62 16 15 H 0.10 4.12 5.53 -2.39 -0.01 4.11 16 16 O -0.32 -14.42 9.84 -70.44 -0.69 -15.12 16 17 C 0.02 0.62 6.49 22.56 0.15 0.77 16 18 C -0.13 -3.86 9.96 22.37 0.22 -3.63 16 19 C -0.11 -2.14 10.04 22.26 0.22 -1.92 16 20 C -0.11 -1.97 10.04 22.26 0.22 -1.74 16 21 C -0.11 -2.73 9.96 22.37 0.22 -2.51 16 22 C 0.02 0.67 6.49 22.56 0.15 0.82 16 23 O -0.30 -10.36 10.07 -82.56 -0.83 -11.19 16 24 C 0.07 2.71 3.16 30.74 0.10 2.80 16 25 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 26 C -0.14 -4.49 8.10 71.98 0.58 -3.91 16 27 H 0.01 0.59 7.34 -2.39 -0.02 0.57 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.06 2.92 6.21 -2.39 -0.01 2.91 16 30 H 0.07 2.44 3.12 -2.39 -0.01 2.43 16 31 H 0.11 5.02 5.91 -2.38 -0.01 5.01 16 32 H 0.28 12.30 8.31 -92.71 -0.77 11.53 16 33 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.07 2.59 6.46 -2.38 -0.02 2.57 16 39 H 0.09 2.55 6.37 -2.39 -0.02 2.54 16 Total: -1.00 -69.01 310.93 5.24 -63.77 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 1.08 Total: 23.06 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 4.74 Total: -0.53 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -1.29 Total: -65.00 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -1.31 Total: -64.32 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -69.01 5.24 -63.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.868 kcal (2) G-P(sol) polarization free energy of solvation -69.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds