Wall clock time and date at job start Tue Mar 31 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.46747 * 2 1 4 4 C 1.35662 * 116.99709 * 179.97438 * 3 2 1 5 5 C 1.39076 * 119.88419 * 180.02562 * 4 3 2 6 6 C 1.37123 * 120.11648 * 180.02562 * 5 4 3 7 7 C 1.40038 * 119.88238 * 359.97438 * 6 5 4 8 8 C 1.46851 * 120.11361 * 180.02562 * 7 6 5 9 9 O 1.21295 * 120.00279 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00136 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47238 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 8 13 13 O 1.21296 * 120.00295 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00208 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00108 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00390 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99846 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00083 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99996 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46819 * 60.00406 * 19 17 15 21 21 H 1.48503 * 109.47086 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47285 * 300.00469 * 19 17 15 23 23 C 1.40044 * 119.77263 * 0.27186 * 7 6 5 24 24 C 1.37125 * 119.88086 * 359.47015 * 23 7 6 25 25 H 1.08993 * 109.47342 * 299.99828 * 1 2 3 26 26 H 1.08999 * 109.47170 * 60.00261 * 1 2 3 27 27 H 1.09004 * 109.46875 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46967 * 240.00437 * 2 1 3 29 29 H 1.08995 * 109.46854 * 120.00130 * 2 1 3 30 30 H 1.07996 * 119.94222 * 0.02562 * 5 4 3 31 31 H 1.07994 * 120.05448 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.46953 * 299.99503 * 10 8 7 33 33 H 1.09000 * 109.47318 * 59.99101 * 10 8 7 34 34 H 1.09001 * 109.46832 * 299.99686 * 11 10 8 35 35 H 1.09004 * 109.47261 * 59.99705 * 11 10 8 36 36 H 0.97006 * 119.99798 * 359.97438 * 14 12 11 37 37 H 0.96999 * 120.00175 * 179.97438 * 18 17 15 38 38 H 1.07994 * 120.06008 * 179.70418 * 23 7 6 39 39 H 1.07994 * 119.94273 * 180.24665 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 0.0005 5 6 3.8802 2.8114 0.0011 6 6 5.2389 2.9966 0.0011 7 6 6.0942 1.8877 0.0011 8 6 7.5500 2.0802 0.0017 9 8 8.0136 3.2010 0.0017 10 6 8.4681 0.8850 0.0023 11 6 9.9227 1.3593 0.0022 12 6 10.8407 0.1643 0.0034 13 8 10.3772 -0.9566 0.0037 14 7 12.1769 0.3409 0.0030 15 6 13.0120 -0.7464 0.0035 16 1 12.5993 -1.7444 0.0047 17 6 14.3896 -0.5643 0.0026 18 7 14.8918 0.6501 0.0017 19 14 15.5275 -2.0456 0.0041 20 1 15.2733 -2.8662 -1.2073 21 1 16.9394 -1.5853 0.0034 22 1 15.2745 -2.8630 1.2177 23 6 5.5564 0.5946 -0.0047 24 6 4.1962 0.4204 0.0007 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.2197 3.6658 0.0015 31 1 5.6485 3.9958 0.0012 32 1 8.2816 0.2841 0.8923 33 1 8.2823 0.2836 -0.8876 34 1 10.1089 1.9601 -0.8881 35 1 10.1088 1.9609 0.8919 36 1 12.5477 1.2373 0.0015 37 1 15.8534 0.7772 0.0014 38 1 6.2117 -0.2637 -0.0096 39 1 3.7805 -0.5763 0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069462089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:37 Heat of formation + Delta-G solvation = -122.461183 kcal Electronic energy + Delta-G solvation = -21545.011989 eV Core-core repulsion = 18030.712619 eV Total energy + Delta-G solvation = -3514.299371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47948 -40.59566 -39.86141 -38.15532 -36.05804 -33.94811 -33.27030 -32.88088 -32.03208 -30.98236 -27.88168 -26.09076 -24.80012 -24.14272 -22.51729 -21.09002 -20.53332 -19.84493 -19.38881 -18.18105 -17.31418 -17.11547 -16.92750 -16.80619 -16.43467 -15.82114 -15.77942 -15.42393 -15.21832 -14.64945 -14.58936 -14.32446 -14.06308 -13.78349 -13.74330 -13.48500 -13.21635 -12.91832 -12.86110 -12.80666 -12.60615 -12.42757 -12.11685 -12.09549 -11.75483 -11.66545 -11.50798 -10.72517 -10.38072 -10.16016 -10.03545 -9.30683 -8.46819 -5.96699 -0.32602 0.33182 1.40241 1.40346 1.41968 1.53716 2.02728 2.13849 2.29526 2.75917 2.86224 3.20242 3.44571 3.68223 3.83183 3.86406 4.06767 4.10280 4.20644 4.21090 4.30397 4.38633 4.39395 4.48461 4.58807 4.76326 4.86010 4.94691 4.95351 4.97706 5.05877 5.10965 5.21507 5.28660 5.39454 5.40402 5.62341 5.97955 6.32552 6.54024 6.56246 7.09617 7.53874 8.07029 8.70400 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.034840 B = 0.002402 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.485562 B =11654.124779 C =12426.558010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 O -0.323 6.323 4 C 0.159 3.841 5 C -0.173 4.173 6 C -0.027 4.027 7 C -0.226 4.226 8 C 0.408 3.592 9 O -0.490 6.490 10 C -0.138 4.138 11 C -0.111 4.111 12 C 0.439 3.561 13 O -0.629 6.629 14 N -0.573 5.573 15 C -0.337 4.337 16 H 0.084 0.916 17 C -0.017 4.017 18 N -0.922 5.922 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 C -0.026 4.026 24 C -0.222 4.222 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.150 0.850 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.482 1.145 -0.017 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.237 6.237 4 C 0.113 3.887 5 C -0.192 4.192 6 C -0.045 4.045 7 C -0.227 4.227 8 C 0.289 3.711 9 O -0.369 6.369 10 C -0.176 4.176 11 C -0.151 4.151 12 C 0.228 3.772 13 O -0.517 6.517 14 N -0.209 5.209 15 C -0.466 4.466 16 H 0.102 0.898 17 C -0.216 4.216 18 N -0.562 5.562 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.044 4.044 24 C -0.241 4.241 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.168 0.832 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -26.510 1.195 -0.016 26.537 hybrid contribution 1.134 -0.241 0.000 1.159 sum -25.377 0.953 -0.017 25.395 Atomic orbital electron populations 1.21817 0.91421 1.04245 1.03264 1.23189 0.97009 0.80365 1.02842 1.86034 1.18469 1.31880 1.87304 1.19513 0.82899 0.94389 0.91942 1.20442 0.94904 0.95758 1.08071 1.21182 0.92272 0.99104 0.91936 1.20372 0.94068 0.95218 1.13058 1.22520 0.89318 0.89589 0.69625 1.90502 1.79494 1.28097 1.38780 1.21664 0.92229 0.97422 1.06245 1.21206 0.93729 0.95523 1.04682 1.20798 0.83169 0.91090 0.82186 1.90463 1.76416 1.27298 1.57572 1.42021 1.05028 1.09369 1.64482 1.19713 0.88181 0.88643 1.50108 0.89787 1.26151 0.98466 1.00861 0.96157 1.69687 1.14283 1.22197 1.50045 0.84927 0.76689 0.77255 0.79085 1.19470 1.19656 1.19484 1.21416 0.95409 0.96409 0.91212 1.21372 0.93701 0.99395 1.09586 0.91781 0.91787 0.88220 0.90612 0.90612 0.83245 0.84237 0.87265 0.87261 0.89100 0.89110 0.77078 0.91269 0.83189 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 71.98 0.74 -0.31 16 2 C 0.04 0.40 5.45 71.98 0.39 0.79 16 3 O -0.32 -5.37 10.12 -89.78 -0.91 -6.28 16 4 C 0.16 2.93 6.70 22.67 0.15 3.08 16 5 C -0.17 -3.32 9.95 22.21 0.22 -3.09 16 6 C -0.03 -0.59 9.57 22.44 0.21 -0.38 16 7 C -0.23 -5.43 5.87 -20.15 -0.12 -5.55 16 8 C 0.41 11.74 7.11 27.94 0.20 11.94 16 9 O -0.49 -16.66 15.97 -3.08 -0.05 -16.71 16 10 C -0.14 -4.20 3.59 29.85 0.11 -4.09 16 11 C -0.11 -4.09 4.99 29.85 0.15 -3.94 16 12 C 0.44 21.16 7.78 87.66 0.68 21.84 16 13 O -0.63 -33.73 15.56 -3.08 -0.05 -33.78 16 14 N -0.57 -30.32 5.29 -306.98 -1.62 -31.95 16 15 C -0.34 -19.34 9.68 84.04 0.81 -18.52 16 16 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 17 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 18 N -0.92 -50.91 13.05 21.66 0.28 -50.63 16 19 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 C -0.03 -0.52 9.44 22.45 0.21 -0.31 16 24 C -0.22 -3.76 8.99 22.21 0.20 -3.56 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 28 H 0.08 0.61 7.65 -2.39 -0.02 0.60 16 29 H 0.08 0.61 7.65 -2.39 -0.02 0.60 16 30 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.14 3.01 7.64 -2.91 -0.02 2.99 16 32 H 0.11 3.20 8.05 -2.39 -0.02 3.18 16 33 H 0.11 3.20 8.03 -2.39 -0.02 3.18 16 34 H 0.09 3.21 8.10 -2.39 -0.02 3.19 16 35 H 0.09 3.21 8.10 -2.38 -0.02 3.19 16 36 H 0.40 20.29 7.90 -92.70 -0.73 19.56 16 37 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.15 2.64 7.04 -2.91 -0.02 2.62 16 39 H 0.16 1.81 6.27 -2.91 -0.02 1.79 16 Total: -1.00 -70.00 340.13 4.45 -65.54 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.34 Total: 31.20 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 4.43 Total: -2.53 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.34 Total: -82.58 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -1.01 Total: -56.76 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -70.00 4.45 -65.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069462089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.919 kcal (2) G-P(sol) polarization free energy of solvation -69.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds