Wall clock time and date at job start Tue Mar 31 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 113.99807 * 2 1 4 4 C 1.53002 * 109.47211 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47065 * 65.00048 * 4 3 2 6 6 C 1.52999 * 109.47173 * 304.99753 * 4 3 2 7 7 S 1.81396 * 109.47260 * 184.99871 * 4 3 2 8 8 O 1.42097 * 110.54496 * 68.37833 * 7 4 3 9 9 O 1.42102 * 110.54670 * 291.62361 * 7 4 3 10 10 N 1.65606 * 104.45062 * 180.02562 * 7 4 3 11 11 C 1.46503 * 119.99835 * 270.00298 * 10 7 4 12 12 C 1.50707 * 109.46670 * 264.99913 * 11 10 7 13 13 H 1.07994 * 120.00237 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99631 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00245 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99903 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47313 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47314 * 119.99767 * 16 14 12 19 19 H 1.48502 * 109.47484 * 240.00040 * 16 14 12 20 20 C 1.46495 * 120.00001 * 89.99698 * 10 7 4 21 21 C 1.52996 * 109.47343 * 265.00042 * 20 10 7 22 22 C 1.53002 * 117.49888 * 116.25574 * 21 20 10 23 23 C 1.53000 * 117.50107 * 184.91336 * 21 20 10 24 24 H 1.09003 * 109.46904 * 60.00139 * 1 2 3 25 25 H 1.08997 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47693 * 300.00574 * 1 2 3 27 27 H 1.09002 * 109.47885 * 59.99794 * 3 2 1 28 28 H 1.09003 * 109.47494 * 299.99617 * 3 2 1 29 29 H 1.09002 * 109.46934 * 60.00100 * 6 4 3 30 30 H 1.09000 * 109.47648 * 179.97438 * 6 4 3 31 31 H 1.08997 * 109.47366 * 300.00111 * 6 4 3 32 32 H 1.09001 * 109.47327 * 24.99687 * 11 10 7 33 33 H 1.08999 * 109.47012 * 145.00087 * 11 10 7 34 34 H 0.96993 * 120.00449 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47043 * 144.99939 * 20 10 7 36 36 H 1.09004 * 109.47109 * 25.00493 * 20 10 7 37 37 H 1.09002 * 115.54951 * 330.58548 * 21 20 10 38 38 H 1.09000 * 117.49996 * 215.00804 * 22 21 20 39 39 H 1.08999 * 117.49664 * 0.02562 * 22 21 20 40 40 H 1.09008 * 117.49673 * 359.97438 * 23 21 20 41 41 H 1.08999 * 117.49959 * 144.99502 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8637 0.7230 -0.9305 6 6 3.9780 0.3200 1.1826 7 16 4.2726 2.8354 0.1497 8 8 4.0183 3.3808 1.4369 9 8 4.0362 3.5953 -1.0276 10 7 5.9057 2.5613 0.1370 11 6 6.6194 2.3298 1.3954 12 6 7.2045 3.6287 1.8872 13 1 7.0597 4.5356 1.3191 14 6 7.9257 3.6587 3.0620 15 7 8.1025 2.5542 3.7536 16 14 8.6516 5.2684 3.6713 17 1 8.3121 6.3564 2.7193 18 1 8.0917 5.5891 5.0087 19 1 10.1277 5.1397 3.7705 20 6 6.6368 2.5502 -1.1324 21 6 6.7604 1.1113 -1.6373 22 6 6.0691 0.7639 -2.9573 23 6 7.5947 0.8739 -2.8976 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6885 1.8465 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.5351 -0.6720 1.0931 30 1 5.0646 0.2335 1.1829 31 1 3.6497 0.7817 2.1138 32 1 5.9258 1.9388 2.1398 33 1 7.4206 1.6093 1.2314 34 1 8.6101 2.5752 4.5799 35 1 7.6318 2.9694 -0.9824 36 1 6.0978 3.1482 -1.8674 37 1 6.7856 0.3426 -0.8648 38 1 5.6395 -0.2333 -3.0533 39 1 5.5267 1.5607 -3.4662 40 1 8.0552 1.7431 -3.3674 41 1 8.1689 -0.0508 -2.9543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114215457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:46 Heat of formation + Delta-G solvation = -93.555057 kcal Electronic energy + Delta-G solvation = -22920.900476 eV Core-core repulsion = 19543.298521 eV Total energy + Delta-G solvation = -3377.601956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.18258 -37.68469 -36.56651 -35.36785 -34.83100 -33.63511 -32.34087 -27.85734 -27.42939 -25.91195 -25.35084 -22.68851 -22.15776 -21.90047 -20.22467 -18.23967 -17.34951 -16.81106 -16.33969 -16.25829 -15.74109 -15.49861 -14.96736 -14.91135 -14.40088 -14.15615 -13.69800 -13.41368 -12.76283 -12.50659 -12.43508 -12.30315 -11.84991 -11.81422 -11.52636 -11.49241 -11.41618 -11.38840 -11.24995 -11.09797 -10.99332 -10.73172 -10.54211 -10.29675 -10.05690 -9.98208 -9.83262 -9.67430 -9.59288 -8.41500 -8.04731 -6.03730 -4.06409 0.75720 3.20449 3.33105 3.40874 3.46789 3.69628 3.99094 4.42366 4.47657 4.49778 4.65624 4.90932 5.00994 5.09548 5.11481 5.14950 5.19224 5.20750 5.31914 5.47917 5.48765 5.54980 5.63308 5.76572 5.79246 5.97870 6.02706 6.05075 6.11652 6.25332 6.41997 6.54332 6.61528 6.96048 7.21630 7.40361 7.60731 7.94259 8.23929 8.96068 9.58232 11.05026 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.006162 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.815949 B = 4542.819627 C = 5556.011988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.377 6.377 3 C 0.080 3.920 4 C -0.606 4.606 5 H 0.136 0.864 6 C -0.129 4.129 7 S 2.608 3.392 8 O -0.932 6.932 9 O -0.973 6.973 10 N -0.974 5.974 11 C 0.254 3.746 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.897 5.897 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.150 3.850 21 C -0.172 4.172 22 C -0.193 4.193 23 C -0.173 4.173 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 -6.502 -10.374 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.296 6.296 3 C 0.002 3.998 4 C -0.711 4.711 5 H 0.154 0.846 6 C -0.187 4.187 7 S 2.698 3.302 8 O -0.922 6.922 9 O -0.963 6.963 10 N -0.812 5.812 11 C 0.132 3.868 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.536 5.536 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.211 1.211 20 C 0.023 3.977 21 C -0.192 4.192 22 C -0.230 4.230 23 C -0.210 4.210 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.333 -5.922 -10.117 14.984 hybrid contribution 0.302 0.162 0.291 0.450 sum -9.030 -5.760 -9.826 14.536 Atomic orbital electron populations 1.22801 0.81134 1.02869 1.00247 1.87924 1.19455 1.26811 1.95409 1.22133 0.90431 0.86146 1.01119 1.30924 1.04063 1.27011 1.09114 0.84562 1.21484 1.02468 1.00217 0.94553 1.05199 0.74502 0.76281 0.74250 1.93626 1.84168 1.74392 1.40002 1.93502 1.85366 1.66780 1.50701 1.57348 1.23240 1.87126 1.13489 1.19175 0.92502 0.97399 0.77727 1.21514 1.32688 0.94921 1.07090 0.92063 1.24908 0.96225 0.96567 0.96315 1.69919 1.41145 1.26694 1.15884 0.86479 0.78478 0.83802 0.78907 1.19661 1.20879 1.21053 1.20822 0.99306 0.92753 0.84784 1.23072 1.04632 1.00239 0.91300 1.23146 0.95474 1.02721 1.01684 1.22867 0.93366 1.03055 1.01759 0.93965 0.89462 0.93762 0.92001 0.92124 0.90604 0.90524 0.91025 0.93949 0.94493 0.92807 0.88918 0.89981 0.87101 0.89153 0.88580 0.88697 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -5.02 9.82 -35.23 -0.35 -5.37 16 3 C 0.08 1.10 5.44 37.16 0.20 1.30 16 4 C -0.61 -9.17 3.36 -26.73 -0.09 -9.26 16 5 H 0.14 1.83 8.14 -51.93 -0.42 1.41 16 6 C -0.13 -1.99 8.25 37.16 0.31 -1.68 16 7 S 2.61 50.29 4.81 -107.50 -0.52 49.78 16 8 O -0.93 -21.61 16.87 -57.54 -0.97 -22.58 16 9 O -0.97 -19.64 16.53 -57.54 -0.95 -20.59 16 10 N -0.97 -19.49 2.47 -115.66 -0.29 -19.78 16 11 C 0.25 6.09 4.05 -5.19 -0.02 6.07 16 12 C -0.52 -14.42 9.38 -34.44 -0.32 -14.74 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 16 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.15 2.56 5.94 -4.05 -0.02 2.54 16 21 C -0.17 -2.45 6.01 -90.62 -0.54 -2.99 16 22 C -0.19 -2.33 10.18 -26.69 -0.27 -2.60 16 23 C -0.17 -2.06 10.25 -26.70 -0.27 -2.33 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.06 7.56 -51.93 -0.39 0.67 16 30 H 0.08 1.20 6.54 -51.93 -0.34 0.86 16 31 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 32 H 0.04 1.07 6.54 -51.93 -0.34 0.73 16 33 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.09 1.64 8.11 -51.93 -0.42 1.22 16 36 H 0.08 1.35 6.55 -51.93 -0.34 1.01 16 37 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.10 1.14 8.03 -51.93 -0.42 0.73 16 40 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 351.06 15.07 5.29 5.29 Total: -1.00 -32.52 351.06 -8.95 -41.47 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.86 Total: 0.80 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -0.02 Total: -20.70 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.45 Total: -44.84 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -2.27 Total: -48.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 50.29 SS G_CDS: -0.52 Total: 49.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.52 -8.95 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114215457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.084 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds