Wall clock time and date at job start Tue Mar 31 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 113.99807 * 2 1 4 4 C 1.53002 * 109.47211 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47065 * 65.00048 * 4 3 2 6 6 C 1.52999 * 109.47173 * 304.99753 * 4 3 2 7 7 S 1.81396 * 109.47260 * 184.99871 * 4 3 2 8 8 O 1.42097 * 110.54496 * 68.37833 * 7 4 3 9 9 O 1.42102 * 110.54670 * 291.62361 * 7 4 3 10 10 N 1.65606 * 104.45062 * 180.02562 * 7 4 3 11 11 C 1.46503 * 119.99835 * 270.00298 * 10 7 4 12 12 C 1.50707 * 109.46670 * 264.99913 * 11 10 7 13 13 H 1.07994 * 120.00237 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99631 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00245 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99903 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47313 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47314 * 119.99767 * 16 14 12 19 19 H 1.48502 * 109.47484 * 240.00040 * 16 14 12 20 20 C 1.46495 * 120.00001 * 89.99698 * 10 7 4 21 21 C 1.52996 * 109.47343 * 265.00042 * 20 10 7 22 22 C 1.53002 * 117.49888 * 116.25574 * 21 20 10 23 23 C 1.53000 * 117.50107 * 184.91336 * 21 20 10 24 24 H 1.09003 * 109.46904 * 60.00139 * 1 2 3 25 25 H 1.08997 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47693 * 300.00574 * 1 2 3 27 27 H 1.09002 * 109.47885 * 59.99794 * 3 2 1 28 28 H 1.09003 * 109.47494 * 299.99617 * 3 2 1 29 29 H 1.09002 * 109.46934 * 60.00100 * 6 4 3 30 30 H 1.09000 * 109.47648 * 179.97438 * 6 4 3 31 31 H 1.08997 * 109.47366 * 300.00111 * 6 4 3 32 32 H 1.09001 * 109.47327 * 24.99687 * 11 10 7 33 33 H 1.08999 * 109.47012 * 145.00087 * 11 10 7 34 34 H 0.96993 * 120.00449 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47043 * 144.99939 * 20 10 7 36 36 H 1.09004 * 109.47109 * 25.00493 * 20 10 7 37 37 H 1.09002 * 115.54951 * 330.58548 * 21 20 10 38 38 H 1.09000 * 117.49996 * 215.00804 * 22 21 20 39 39 H 1.08999 * 117.49664 * 0.02562 * 22 21 20 40 40 H 1.09008 * 117.49673 * 359.97438 * 23 21 20 41 41 H 1.08999 * 117.49959 * 144.99502 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8637 0.7230 -0.9305 6 6 3.9780 0.3200 1.1826 7 16 4.2726 2.8354 0.1497 8 8 4.0183 3.3808 1.4369 9 8 4.0362 3.5953 -1.0276 10 7 5.9057 2.5613 0.1370 11 6 6.6194 2.3298 1.3954 12 6 7.2045 3.6287 1.8872 13 1 7.0597 4.5356 1.3191 14 6 7.9257 3.6587 3.0620 15 7 8.1025 2.5542 3.7536 16 14 8.6516 5.2684 3.6713 17 1 8.3121 6.3564 2.7193 18 1 8.0917 5.5891 5.0087 19 1 10.1277 5.1397 3.7705 20 6 6.6368 2.5502 -1.1324 21 6 6.7604 1.1113 -1.6373 22 6 6.0691 0.7639 -2.9573 23 6 7.5947 0.8739 -2.8976 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6885 1.8465 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.5351 -0.6720 1.0931 30 1 5.0646 0.2335 1.1829 31 1 3.6497 0.7817 2.1138 32 1 5.9258 1.9388 2.1398 33 1 7.4206 1.6093 1.2314 34 1 8.6101 2.5752 4.5799 35 1 7.6318 2.9694 -0.9824 36 1 6.0978 3.1482 -1.8674 37 1 6.7856 0.3426 -0.8648 38 1 5.6395 -0.2333 -3.0533 39 1 5.5267 1.5607 -3.4662 40 1 8.0552 1.7431 -3.3674 41 1 8.1689 -0.0508 -2.9543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114215457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:45 Heat of formation + Delta-G solvation = -115.703324 kcal Electronic energy + Delta-G solvation = -22921.860897 eV Core-core repulsion = 19543.298521 eV Total energy + Delta-G solvation = -3378.562376 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.17688 -38.89431 -38.18792 -36.99698 -36.38803 -34.84844 -34.34079 -29.62142 -28.45853 -27.07646 -26.76229 -24.47842 -23.23918 -23.09650 -21.41984 -19.77483 -18.83078 -18.49595 -17.94848 -17.47862 -17.01268 -16.85585 -16.37468 -16.14106 -15.91005 -15.35572 -15.10359 -14.66283 -14.40017 -13.95600 -13.83605 -13.61369 -13.43738 -13.16389 -13.13145 -12.93243 -12.82849 -12.76505 -12.51813 -12.50902 -12.39548 -12.25619 -12.12451 -12.00239 -11.68735 -11.45463 -11.16839 -10.76155 -10.73831 -10.54283 -9.71786 -8.16718 -6.26536 -0.75664 1.38946 1.41634 1.52678 1.71074 2.43365 2.60143 2.95896 3.06333 3.12091 3.16000 3.47682 3.64020 3.90329 4.00335 4.03736 4.10441 4.27416 4.32501 4.36549 4.46104 4.53815 4.54892 4.72382 4.80124 4.84763 4.86178 4.91832 5.04977 5.10323 5.18269 5.26174 5.35276 5.38875 5.53417 5.75054 5.95919 6.04272 6.17341 6.81134 7.41226 8.90850 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.006162 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.815949 B = 4542.819627 C = 5556.011988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.391 6.391 3 C 0.073 3.927 4 C -0.575 4.575 5 H 0.162 0.838 6 C -0.130 4.130 7 S 2.606 3.394 8 O -0.981 6.981 9 O -0.987 6.987 10 N -0.981 5.981 11 C 0.271 3.729 12 C -0.543 4.543 13 H 0.048 0.952 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.951 3.049 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.271 1.271 20 C 0.147 3.853 21 C -0.193 4.193 22 C -0.179 4.179 23 C -0.162 4.162 24 H 0.056 0.944 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 -7.568 -11.837 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.310 6.310 3 C -0.006 4.006 4 C -0.686 4.686 5 H 0.180 0.820 6 C -0.188 4.188 7 S 2.701 3.299 8 O -0.972 6.972 9 O -0.977 6.977 10 N -0.818 5.818 11 C 0.148 3.852 12 C -0.582 4.582 13 H 0.066 0.934 14 C -0.185 4.185 15 N -0.564 5.564 16 Si 0.777 3.223 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.196 1.196 20 C 0.021 3.979 21 C -0.213 4.213 22 C -0.216 4.216 23 C -0.200 4.200 24 H 0.075 0.925 25 H 0.125 0.875 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.017 -6.941 -11.601 16.825 hybrid contribution 0.421 0.430 0.690 0.915 sum -9.596 -6.511 -10.911 15.922 Atomic orbital electron populations 1.23085 0.79089 1.04545 1.01287 1.87878 1.21627 1.25937 1.95592 1.22195 0.89098 0.87079 1.02192 1.30513 1.05260 1.22535 1.10304 0.82012 1.21504 1.02193 1.01124 0.93983 1.04988 0.74202 0.77695 0.73016 1.93564 1.84698 1.76793 1.42126 1.93472 1.85332 1.68510 1.50432 1.57156 1.23745 1.87731 1.13180 1.18700 0.91944 0.95516 0.79028 1.21854 1.33065 0.95862 1.07416 0.93385 1.25653 0.96683 0.99628 0.96555 1.69996 1.41800 1.28282 1.16294 0.85608 0.78405 0.80103 0.78193 1.19701 1.20573 1.19592 1.20927 0.98192 0.95133 0.83640 1.22845 1.08149 0.97925 0.92356 1.23244 0.95653 1.03711 0.99000 1.22993 0.93752 1.03950 0.99282 0.92505 0.87535 0.93195 0.92076 0.90222 0.88470 0.91216 0.92383 0.95504 0.95173 0.92479 0.90494 0.89520 0.87682 0.87304 0.88306 0.88132 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.50 16 2 O -0.39 -9.33 9.82 -148.98 -1.46 -10.79 16 3 C 0.07 1.86 5.44 71.98 0.39 2.26 16 4 C -0.58 -16.59 3.36 30.59 0.10 -16.49 16 5 H 0.16 3.89 8.14 -2.39 -0.02 3.88 16 6 C -0.13 -3.90 8.25 71.98 0.59 -3.30 16 7 S 2.61 101.38 4.81 -56.49 -0.27 101.11 16 8 O -0.98 -47.11 16.87 -127.65 -2.15 -49.26 16 9 O -0.99 -39.67 16.53 -127.65 -2.11 -41.78 16 10 N -0.98 -40.12 2.47 -519.84 -1.28 -41.40 16 11 C 0.27 13.49 4.05 85.63 0.35 13.84 16 12 C -0.54 -30.84 9.38 25.60 0.24 -30.60 16 13 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 14 C 0.01 0.80 5.46 84.66 0.46 1.26 16 15 N -0.92 -53.96 13.29 21.45 0.28 -53.67 16 16 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 17 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 C 0.15 5.05 5.94 86.38 0.51 5.57 16 21 C -0.19 -5.26 6.01 -10.79 -0.06 -5.32 16 22 C -0.18 -3.82 10.18 30.62 0.31 -3.50 16 23 C -0.16 -3.50 10.25 30.62 0.31 -3.19 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 2.52 7.56 -2.39 -0.02 2.50 16 30 H 0.07 2.18 6.54 -2.39 -0.02 2.17 16 31 H 0.06 1.89 8.11 -2.39 -0.02 1.87 16 32 H 0.03 1.41 6.54 -2.39 -0.02 1.40 16 33 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 34 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 36 H 0.09 2.85 6.55 -2.38 -0.02 2.83 16 37 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.10 2.07 8.03 -2.39 -0.02 2.05 16 40 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -70.47 351.06 0.48 -69.99 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.99 Total: 16.66 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 4.46 Total: -37.98 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -1.00 Total: -95.07 kcal Atomic # 8 Polarization: -96.10 SS G_CDS: -5.73 Total: -101.83 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 101.38 SS G_CDS: -0.27 Total: 101.11 kcal Total: -70.47 0.48 -69.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114215457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.709 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds