Wall clock time and date at job start Tue Mar 31 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00084 * 2 1 4 4 C 1.53002 * 109.46962 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46915 * 295.00017 * 4 3 2 6 6 C 1.53000 * 109.47325 * 54.99817 * 4 3 2 7 7 S 1.81397 * 109.47342 * 175.00103 * 4 3 2 8 8 O 1.42107 * 110.54381 * 66.77546 * 7 4 3 9 9 O 1.42100 * 110.54274 * 290.02937 * 7 4 3 10 10 N 1.65598 * 104.45068 * 178.40212 * 7 4 3 11 11 C 1.46506 * 119.99903 * 96.12826 * 10 7 4 12 12 C 1.50698 * 109.47028 * 245.70996 * 11 10 7 13 13 H 1.08001 * 120.00119 * 355.63519 * 12 11 10 14 14 C 1.37872 * 119.99846 * 175.63284 * 12 11 10 15 15 N 1.31516 * 120.00058 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00253 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46633 * 89.99827 * 16 14 12 18 18 H 1.48500 * 109.47260 * 209.99647 * 16 14 12 19 19 H 1.48497 * 109.46891 * 330.00161 * 16 14 12 20 20 C 1.46498 * 119.99879 * 276.12783 * 10 7 4 21 21 C 1.53005 * 109.46936 * 264.99566 * 20 10 7 22 22 C 1.52999 * 117.50029 * 243.74805 * 21 20 10 23 23 C 1.52999 * 117.49774 * 175.08750 * 21 20 10 24 24 H 1.08997 * 109.47656 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47196 * 300.00466 * 1 2 3 26 26 H 1.09005 * 109.47067 * 59.99871 * 1 2 3 27 27 H 1.08998 * 109.47101 * 60.00183 * 3 2 1 28 28 H 1.08997 * 109.46962 * 299.99622 * 3 2 1 29 29 H 1.08997 * 109.47425 * 186.14752 * 6 4 3 30 30 H 1.09000 * 109.47070 * 306.14528 * 6 4 3 31 31 H 1.08998 * 109.47106 * 66.14578 * 6 4 3 32 32 H 1.08998 * 109.47164 * 125.70646 * 11 10 7 33 33 H 1.08997 * 109.46656 * 5.70858 * 11 10 7 34 34 H 0.96994 * 120.00683 * 179.97438 * 15 14 12 35 35 H 1.08990 * 109.47245 * 24.99885 * 20 10 7 36 36 H 1.09000 * 109.47048 * 145.00403 * 20 10 7 37 37 H 1.09002 * 115.54757 * 29.42454 * 21 20 10 38 38 H 1.08992 * 117.49836 * 0.02562 * 22 21 20 39 39 H 1.09007 * 117.49797 * 145.02349 * 22 21 20 40 40 H 1.09002 * 117.50276 * 214.98387 * 23 21 20 41 41 H 1.09000 * 117.49786 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8637 0.7227 0.9305 6 6 3.9781 0.3196 -1.1826 7 16 4.2729 2.8352 -0.1497 8 8 4.0051 3.6078 1.0126 9 8 4.0501 3.3654 -1.4491 10 7 5.9057 2.5650 -0.0932 11 6 6.6733 2.4549 -1.3362 12 6 7.2143 1.0547 -1.4701 13 1 7.0673 0.3405 -0.6734 14 6 7.8970 0.6855 -2.6096 15 7 8.3696 -0.5362 -2.7263 16 14 8.1507 1.9206 -3.9879 17 1 9.4209 2.6570 -3.7650 18 1 8.2147 1.2056 -5.2879 19 1 7.0183 2.8811 -4.0065 20 6 6.5825 2.4361 1.1996 21 6 7.1618 3.7917 1.6094 22 6 8.6828 3.9020 1.7322 23 6 7.8116 3.8938 2.9908 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 5.0519 0.1429 -1.1215 30 1 3.4508 -0.6339 -1.1526 31 1 3.7469 0.8336 -2.1156 32 1 7.5010 3.1638 -1.3161 33 1 6.0254 2.6767 -2.1841 34 1 8.8495 -0.7962 -3.5281 35 1 5.8678 2.1039 1.9524 36 1 7.3884 1.7068 1.1167 37 1 6.6219 4.6642 1.2414 38 1 9.2709 3.0090 1.5207 39 1 9.1437 4.8473 1.4453 40 1 7.6996 4.8336 3.5315 41 1 7.8268 2.9952 3.6075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114215459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:47 Heat of formation + Delta-G solvation = -90.532597 kcal Electronic energy + Delta-G solvation = -22919.534854 eV Core-core repulsion = 19542.063962 eV Total energy + Delta-G solvation = -3377.470892 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.12598 -37.60269 -36.73573 -35.53669 -34.94619 -33.49513 -32.40021 -28.41871 -27.31647 -25.84208 -25.57443 -22.34176 -22.02349 -21.53973 -20.38113 -18.26255 -17.39393 -16.87385 -16.73510 -16.17207 -15.87736 -15.62231 -15.02201 -14.80619 -14.27812 -14.18582 -13.60708 -13.30026 -12.75421 -12.58398 -12.41322 -12.26943 -12.05522 -11.85154 -11.67944 -11.65361 -11.40428 -11.32961 -11.28045 -11.16114 -10.76587 -10.72787 -10.62989 -10.22812 -10.10362 -9.85455 -9.78191 -9.52961 -9.50881 -8.66688 -8.11782 -6.17491 -4.17378 0.67135 3.08972 3.26308 3.35314 3.41273 3.69780 4.15717 4.30082 4.35270 4.53052 4.69060 4.89688 5.05060 5.11992 5.15995 5.21932 5.22250 5.23877 5.30985 5.53264 5.55920 5.60483 5.66559 5.83779 5.89831 6.15345 6.19704 6.28989 6.39345 6.41356 6.48448 6.66809 6.90469 6.92979 7.03764 7.09501 7.32686 7.55878 8.38923 8.83702 9.43202 10.94186 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.007495 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.148080 B = 3735.036268 C = 5245.484259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.375 6.375 3 C 0.079 3.921 4 C -0.594 4.594 5 H 0.135 0.865 6 C -0.142 4.142 7 S 2.608 3.392 8 O -0.967 6.967 9 O -0.954 6.954 10 N -0.969 5.969 11 C 0.211 3.789 12 C -0.536 4.536 13 H 0.083 0.917 14 C 0.078 3.922 15 N -0.892 5.892 16 Si 0.862 3.138 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.257 1.257 20 C 0.162 3.838 21 C -0.159 4.159 22 C -0.176 4.176 23 C -0.182 4.182 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.055 0.945 34 H 0.266 0.734 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 4.013 7.625 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.293 6.293 3 C 0.001 3.999 4 C -0.702 4.702 5 H 0.153 0.847 6 C -0.200 4.200 7 S 2.699 3.301 8 O -0.958 6.958 9 O -0.945 6.945 10 N -0.806 5.806 11 C 0.088 3.912 12 C -0.575 4.575 13 H 0.101 0.899 14 C -0.125 4.125 15 N -0.530 5.530 16 Si 0.688 3.312 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.181 1.181 20 C 0.035 3.965 21 C -0.179 4.179 22 C -0.213 4.213 23 C -0.219 4.219 24 H 0.106 0.894 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.176 4.533 7.387 12.622 hybrid contribution 0.077 -0.008 -0.660 0.665 sum -9.099 4.525 6.727 12.187 Atomic orbital electron populations 1.22804 0.81209 1.02925 1.00111 1.87959 1.19363 1.26650 1.95356 1.22144 0.90706 0.86231 1.00832 1.30739 1.03585 1.25959 1.09878 0.84704 1.21713 1.05693 0.99388 0.93178 1.05104 0.74301 0.76622 0.74034 1.93551 1.84820 1.66230 1.51159 1.93552 1.84765 1.76224 1.39914 1.57082 1.23279 1.87556 1.12705 1.19673 0.92307 0.98203 0.80995 1.21316 1.35905 0.95821 1.04479 0.89864 1.24823 0.94793 0.94972 0.97957 1.69881 1.36907 1.17745 1.28442 0.87043 0.79719 0.82231 0.82177 1.19959 1.20995 1.18133 1.20686 0.97963 0.95000 0.82806 1.22776 0.95426 1.00256 0.99407 1.23031 0.93663 1.03200 1.01455 1.22908 1.05457 1.02694 0.90890 0.89407 0.94004 0.93860 0.92226 0.92249 0.87247 0.90910 0.91763 0.95182 0.92703 0.92458 0.91449 0.88828 0.87883 0.88240 0.89421 0.89279 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.37 -5.38 9.71 -35.23 -0.34 -5.73 16 3 C 0.08 1.13 5.44 37.16 0.20 1.34 16 4 C -0.59 -9.54 3.36 -26.73 -0.09 -9.63 16 5 H 0.13 1.95 8.14 -51.92 -0.42 1.52 16 6 C -0.14 -2.54 9.00 37.16 0.33 -2.21 16 7 S 2.61 47.78 4.78 -107.50 -0.51 47.27 16 8 O -0.97 -18.29 17.23 -57.54 -0.99 -19.28 16 9 O -0.95 -20.11 16.02 -57.54 -0.92 -21.03 16 10 N -0.97 -18.64 2.73 -115.66 -0.32 -18.96 16 11 C 0.21 4.74 4.64 -5.19 -0.02 4.71 16 12 C -0.54 -13.40 7.36 -34.44 -0.25 -13.65 16 13 H 0.08 2.18 7.24 -52.49 -0.38 1.80 16 14 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.89 -25.29 13.96 55.43 0.77 -24.52 16 16 Si 0.86 20.33 27.56 -169.99 -4.68 15.65 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.26 -5.97 6.42 56.52 0.36 -5.61 16 20 C 0.16 2.74 5.40 -4.04 -0.02 2.71 16 21 C -0.16 -2.53 6.01 -90.62 -0.54 -3.07 16 22 C -0.18 -2.54 10.18 -26.69 -0.27 -2.81 16 23 C -0.18 -2.38 10.25 -26.69 -0.27 -2.66 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.11 2.21 5.41 -51.93 -0.28 1.93 16 30 H 0.07 1.24 7.36 -51.93 -0.38 0.86 16 31 H 0.06 1.16 7.88 -51.93 -0.41 0.76 16 32 H 0.03 0.67 7.79 -51.93 -0.40 0.27 16 33 H 0.06 1.29 5.38 -51.93 -0.28 1.01 16 34 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.07 0.99 7.78 -51.93 -0.40 0.59 16 36 H 0.09 1.64 7.05 -51.93 -0.37 1.27 16 37 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.10 1.47 8.03 -51.93 -0.42 1.05 16 39 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -30.55 344.39 -8.46 -39.01 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.72 Total: 4.31 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 0.07 Total: -21.90 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.46 Total: -43.48 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -2.26 Total: -46.04 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.68 Total: 15.65 kcal Atomic # 16 Polarization: 47.78 SS G_CDS: -0.51 Total: 47.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.55 -8.46 -39.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114215459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.524 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds