Wall clock time and date at job start Tue Mar 31 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00084 * 2 1 4 4 C 1.53002 * 109.46962 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46915 * 295.00017 * 4 3 2 6 6 C 1.53000 * 109.47325 * 54.99817 * 4 3 2 7 7 S 1.81397 * 109.47342 * 175.00103 * 4 3 2 8 8 O 1.42107 * 110.54381 * 66.77546 * 7 4 3 9 9 O 1.42100 * 110.54274 * 290.02937 * 7 4 3 10 10 N 1.65598 * 104.45068 * 178.40212 * 7 4 3 11 11 C 1.46506 * 119.99903 * 96.12826 * 10 7 4 12 12 C 1.50698 * 109.47028 * 245.70996 * 11 10 7 13 13 H 1.08001 * 120.00119 * 355.63519 * 12 11 10 14 14 C 1.37872 * 119.99846 * 175.63284 * 12 11 10 15 15 N 1.31516 * 120.00058 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00253 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46633 * 89.99827 * 16 14 12 18 18 H 1.48500 * 109.47260 * 209.99647 * 16 14 12 19 19 H 1.48497 * 109.46891 * 330.00161 * 16 14 12 20 20 C 1.46498 * 119.99879 * 276.12783 * 10 7 4 21 21 C 1.53005 * 109.46936 * 264.99566 * 20 10 7 22 22 C 1.52999 * 117.50029 * 243.74805 * 21 20 10 23 23 C 1.52999 * 117.49774 * 175.08750 * 21 20 10 24 24 H 1.08997 * 109.47656 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47196 * 300.00466 * 1 2 3 26 26 H 1.09005 * 109.47067 * 59.99871 * 1 2 3 27 27 H 1.08998 * 109.47101 * 60.00183 * 3 2 1 28 28 H 1.08997 * 109.46962 * 299.99622 * 3 2 1 29 29 H 1.08997 * 109.47425 * 186.14752 * 6 4 3 30 30 H 1.09000 * 109.47070 * 306.14528 * 6 4 3 31 31 H 1.08998 * 109.47106 * 66.14578 * 6 4 3 32 32 H 1.08998 * 109.47164 * 125.70646 * 11 10 7 33 33 H 1.08997 * 109.46656 * 5.70858 * 11 10 7 34 34 H 0.96994 * 120.00683 * 179.97438 * 15 14 12 35 35 H 1.08990 * 109.47245 * 24.99885 * 20 10 7 36 36 H 1.09000 * 109.47048 * 145.00403 * 20 10 7 37 37 H 1.09002 * 115.54757 * 29.42454 * 21 20 10 38 38 H 1.08992 * 117.49836 * 0.02562 * 22 21 20 39 39 H 1.09007 * 117.49797 * 145.02349 * 22 21 20 40 40 H 1.09002 * 117.50276 * 214.98387 * 23 21 20 41 41 H 1.09000 * 117.49786 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8637 0.7227 0.9305 6 6 3.9781 0.3196 -1.1826 7 16 4.2729 2.8352 -0.1497 8 8 4.0051 3.6078 1.0126 9 8 4.0501 3.3654 -1.4491 10 7 5.9057 2.5650 -0.0932 11 6 6.6733 2.4549 -1.3362 12 6 7.2143 1.0547 -1.4701 13 1 7.0673 0.3405 -0.6734 14 6 7.8970 0.6855 -2.6096 15 7 8.3696 -0.5362 -2.7263 16 14 8.1507 1.9206 -3.9879 17 1 9.4209 2.6570 -3.7650 18 1 8.2147 1.2056 -5.2879 19 1 7.0183 2.8811 -4.0065 20 6 6.5825 2.4361 1.1996 21 6 7.1618 3.7917 1.6094 22 6 8.6828 3.9020 1.7322 23 6 7.8116 3.8938 2.9908 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 5.0519 0.1429 -1.1215 30 1 3.4508 -0.6339 -1.1526 31 1 3.7469 0.8336 -2.1156 32 1 7.5010 3.1638 -1.3161 33 1 6.0254 2.6767 -2.1841 34 1 8.8495 -0.7962 -3.5281 35 1 5.8678 2.1039 1.9524 36 1 7.3884 1.7068 1.1167 37 1 6.6219 4.6642 1.2414 38 1 9.2709 3.0090 1.5207 39 1 9.1437 4.8473 1.4453 40 1 7.6996 4.8336 3.5315 41 1 7.8268 2.9952 3.6075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114215459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:47 Heat of formation + Delta-G solvation = -111.311426 kcal Electronic energy + Delta-G solvation = -22920.435892 eV Core-core repulsion = 19542.063962 eV Total energy + Delta-G solvation = -3378.371929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.16932 -38.89311 -38.27389 -37.06366 -36.45910 -34.76853 -34.34986 -30.17296 -28.37926 -27.20924 -26.79683 -23.97098 -23.12290 -23.01101 -21.67308 -19.72499 -19.04123 -18.55582 -18.09129 -17.50914 -17.08085 -16.83935 -16.30367 -16.10792 -15.95892 -15.53468 -14.94617 -14.62764 -14.37287 -14.12344 -13.80964 -13.73922 -13.50584 -13.41263 -13.21306 -13.02471 -12.83142 -12.71990 -12.48562 -12.40115 -12.35041 -12.23745 -12.08640 -11.86707 -11.62504 -11.41750 -11.13143 -10.75335 -10.73897 -10.69481 -9.71103 -8.23532 -6.24691 -0.78535 1.37594 1.42042 1.51862 1.63975 2.38525 2.55495 2.97437 2.99729 3.11041 3.14621 3.50323 3.63932 3.81271 4.01050 4.03798 4.19768 4.26100 4.32035 4.33186 4.52487 4.54394 4.56537 4.82471 4.83913 4.86885 4.89154 4.91073 4.94695 5.08566 5.11336 5.31430 5.36155 5.42027 5.44324 5.52556 5.82075 6.06994 6.36394 6.78822 7.38038 8.90822 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.007495 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.148080 B = 3735.036268 C = 5245.484259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.397 6.397 3 C 0.073 3.927 4 C -0.580 4.580 5 H 0.155 0.845 6 C -0.138 4.138 7 S 2.616 3.384 8 O -0.972 6.972 9 O -0.985 6.985 10 N -0.975 5.975 11 C 0.220 3.780 12 C -0.518 4.518 13 H 0.064 0.936 14 C 0.028 3.972 15 N -0.935 5.935 16 Si 0.910 3.090 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.252 1.252 20 C 0.156 3.844 21 C -0.184 4.184 22 C -0.181 4.181 23 C -0.157 4.157 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 4.802 8.881 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.316 6.316 3 C -0.006 4.006 4 C -0.690 4.690 5 H 0.172 0.828 6 C -0.196 4.196 7 S 2.710 3.290 8 O -0.962 6.962 9 O -0.975 6.975 10 N -0.812 5.812 11 C 0.096 3.904 12 C -0.557 4.557 13 H 0.082 0.918 14 C -0.171 4.171 15 N -0.575 5.575 16 Si 0.734 3.266 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.176 1.176 20 C 0.031 3.969 21 C -0.204 4.204 22 C -0.218 4.218 23 C -0.194 4.194 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.258 5.365 8.662 14.458 hybrid contribution 0.315 -0.307 -0.956 1.052 sum -9.943 5.057 7.706 13.558 Atomic orbital electron populations 1.23083 0.79043 1.04448 1.01401 1.87911 1.21735 1.26389 1.95598 1.22236 0.89071 0.86913 1.02347 1.30522 1.05345 1.23200 1.09932 0.82758 1.21585 1.04044 1.00148 0.93792 1.04775 0.73789 0.77208 0.73212 1.93538 1.84679 1.67092 1.50882 1.93510 1.85052 1.77575 1.41402 1.57016 1.23755 1.87902 1.12507 1.19366 0.92389 0.96404 0.82278 1.21455 1.34326 0.96561 1.03352 0.91787 1.25470 0.95152 0.96248 1.00224 1.69989 1.38746 1.19505 1.29257 0.86268 0.80020 0.80491 0.79774 1.19037 1.21004 1.17637 1.20854 0.98210 0.95620 0.82227 1.22720 0.96272 0.99063 1.02344 1.23068 0.92700 1.03323 1.02733 1.23032 1.02337 1.04241 0.89817 0.87883 0.92299 0.92991 0.89873 0.91747 0.89789 0.90091 0.92496 0.95073 0.93669 0.92549 0.89208 0.89973 0.89073 0.89049 0.88549 0.87518 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.53 16 2 O -0.40 -10.50 9.71 -148.98 -1.45 -11.94 16 3 C 0.07 1.92 5.44 71.98 0.39 2.31 16 4 C -0.58 -17.76 3.36 30.59 0.10 -17.66 16 5 H 0.15 4.12 8.14 -2.39 -0.02 4.10 16 6 C -0.14 -4.89 9.00 71.98 0.65 -4.24 16 7 S 2.62 93.36 4.78 -56.49 -0.27 93.09 16 8 O -0.97 -35.12 17.23 -127.65 -2.20 -37.32 16 9 O -0.98 -41.17 16.02 -127.65 -2.04 -43.22 16 10 N -0.98 -37.18 2.73 -519.85 -1.42 -38.59 16 11 C 0.22 9.88 4.64 85.63 0.40 10.28 16 12 C -0.52 -26.25 7.36 25.60 0.19 -26.06 16 13 H 0.06 3.45 7.24 -2.91 -0.02 3.43 16 14 C 0.03 1.53 5.47 84.65 0.46 1.99 16 15 N -0.93 -54.08 13.96 21.45 0.30 -53.78 16 16 Si 0.91 41.99 27.56 68.60 1.89 43.88 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.25 -11.36 6.42 99.48 0.64 -10.72 16 20 C 0.16 5.16 5.40 86.38 0.47 5.63 16 21 C -0.18 -5.63 6.01 -10.79 -0.06 -5.70 16 22 C -0.18 -4.98 10.18 30.62 0.31 -4.67 16 23 C -0.16 -3.71 10.25 30.62 0.31 -3.40 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 3.43 5.41 -2.39 -0.01 3.42 16 30 H 0.08 2.72 7.36 -2.39 -0.02 2.70 16 31 H 0.06 2.07 7.88 -2.39 -0.02 2.05 16 32 H 0.03 1.39 7.79 -2.39 -0.02 1.37 16 33 H 0.05 2.14 5.38 -2.39 -0.01 2.12 16 34 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.09 2.49 7.78 -2.39 -0.02 2.48 16 36 H 0.08 2.87 7.05 -2.39 -0.02 2.86 16 37 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.09 2.64 8.03 -2.39 -0.02 2.62 16 39 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -65.01 344.39 0.21 -64.80 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.93 Total: 23.07 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 4.47 Total: -39.98 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -1.12 Total: -92.38 kcal Atomic # 8 Polarization: -86.79 SS G_CDS: -5.69 Total: -92.48 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.89 Total: 43.88 kcal Atomic # 16 Polarization: 93.36 SS G_CDS: -0.27 Total: 93.09 kcal Total: -65.01 0.21 -64.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114215459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.507 kcal (2) G-P(sol) polarization free energy of solvation -65.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds