Wall clock time and date at job start Tue Mar 31 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46851 * 2 1 4 4 O 1.42899 * 109.47116 * 240.00682 * 2 1 3 5 5 C 1.52991 * 109.46940 * 120.00162 * 2 1 3 6 6 C 1.53010 * 109.46745 * 185.79337 * 5 2 1 7 7 H 1.08992 * 109.87530 * 52.84535 * 6 5 2 8 8 C 1.54324 * 110.01194 * 291.74096 * 6 5 2 9 9 C 1.55152 * 102.94452 * 218.32116 * 8 6 5 10 10 C 1.54689 * 101.67796 * 35.33631 * 9 8 6 11 11 N 1.47024 * 109.87847 * 173.85967 * 6 5 2 12 12 S 1.65592 * 125.64830 * 298.47234 * 11 6 5 13 13 O 1.42101 * 104.27942 * 339.06565 * 12 11 6 14 14 O 1.42101 * 104.27880 * 211.20792 * 12 11 6 15 15 C 1.81399 * 104.45036 * 95.13609 * 12 11 6 16 16 C 1.53004 * 109.47276 * 175.00559 * 15 12 11 17 17 C 1.50696 * 109.46936 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00610 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99865 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00030 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00291 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47451 * 59.99561 * 21 19 17 23 23 H 1.48500 * 109.47339 * 299.99979 * 21 19 17 24 24 H 1.48500 * 109.47564 * 179.97438 * 21 19 17 25 25 H 1.08998 * 109.47154 * 299.99707 * 1 2 3 26 26 H 1.09008 * 109.47225 * 59.99825 * 1 2 3 27 27 H 1.09000 * 109.46963 * 179.97438 * 1 2 3 28 28 H 0.96707 * 113.99847 * 299.99738 * 4 2 1 29 29 H 1.09002 * 109.47478 * 65.79996 * 5 2 1 30 30 H 1.08993 * 109.47476 * 305.79327 * 5 2 1 31 31 H 1.08998 * 110.72135 * 336.68694 * 8 6 5 32 32 H 1.09001 * 110.71697 * 99.77398 * 8 6 5 33 33 H 1.08993 * 111.00803 * 153.58027 * 9 8 6 34 34 H 1.09008 * 111.00275 * 277.39075 * 9 8 6 35 35 H 1.09001 * 110.39289 * 204.36929 * 10 9 8 36 36 H 1.08995 * 110.23648 * 82.11470 * 10 9 8 37 37 H 1.09000 * 109.46876 * 55.01238 * 15 12 11 38 38 H 1.09000 * 109.47117 * 295.00924 * 15 12 11 39 39 H 1.09010 * 109.46648 * 60.00471 * 16 15 12 40 40 H 1.08997 * 109.47607 * 300.00691 * 16 15 12 41 41 H 0.97004 * 120.00087 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0399 -0.7213 1.2492 6 6 3.5631 -0.5963 1.3241 7 1 3.8532 0.4514 1.2470 8 6 4.2161 -1.4070 0.1848 9 6 5.4716 -2.0135 0.8652 10 6 4.9517 -2.2848 2.2966 11 7 4.0489 -1.1576 2.5931 12 16 3.6533 -0.6099 4.1049 13 8 3.2100 0.7230 3.8899 14 8 4.8071 -0.8808 4.8889 15 6 2.2709 -1.6649 4.6212 16 6 1.8909 -1.3367 6.0665 17 6 0.7421 -2.2127 6.4951 18 1 0.3249 -2.9319 5.8059 19 6 0.2235 -2.0960 7.7673 20 7 0.7318 -1.2206 8.6069 21 14 -1.2001 -3.1824 8.2989 22 1 -0.7964 -4.6084 8.2055 23 1 -2.3664 -2.9391 7.4125 24 1 -1.5690 -2.8638 9.7017 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 -1.5951 -1.2330 29 1 1.7639 -1.7745 1.1988 30 1 1.5944 -0.2709 2.1361 31 1 3.5466 -2.1945 -0.1611 32 1 4.4990 -0.7534 -0.6404 33 1 5.7729 -2.9392 0.3751 34 1 6.2927 -1.2967 0.8800 35 1 5.7804 -2.3034 3.0045 36 1 4.4047 -3.2271 2.3268 37 1 2.5672 -2.7116 4.5522 38 1 1.4147 -1.4860 3.9708 39 1 1.5946 -0.2899 6.1355 40 1 2.7471 -1.5155 6.7169 41 1 1.4713 -0.6567 8.3310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161664547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:24 Heat of formation + Delta-G solvation = -172.774967 kcal Electronic energy + Delta-G solvation = -22646.261982 eV Core-core repulsion = 19265.224794 eV Total energy + Delta-G solvation = -3381.037189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24043 -38.37307 -37.99570 -37.17327 -36.34757 -33.22852 -32.98178 -31.87145 -30.62165 -27.16690 -26.55895 -24.14628 -23.03714 -22.55427 -21.86581 -19.92416 -19.31660 -18.54764 -17.75641 -17.32081 -17.16670 -16.50693 -16.39819 -15.67945 -15.40091 -15.19247 -14.93506 -14.82484 -14.59652 -14.35026 -14.04528 -13.64393 -13.40684 -13.29863 -13.17060 -13.00767 -12.90403 -12.76064 -12.66027 -12.50008 -12.34069 -12.07061 -11.99029 -11.90260 -11.74149 -11.56732 -11.52857 -10.91609 -10.78466 -10.65154 -9.94910 -8.78354 -6.52935 -0.88746 1.51618 1.60276 1.61469 1.79618 2.52613 2.69015 2.95661 3.06372 3.40126 3.59515 3.72929 3.74647 3.82270 3.92319 4.08212 4.18660 4.27755 4.40943 4.43032 4.47287 4.56359 4.63348 4.85705 4.86812 4.93724 4.94314 5.01277 5.05386 5.07753 5.09964 5.22696 5.25128 5.32452 5.45329 5.54038 5.76647 6.03497 6.40162 6.93640 7.30573 8.60989 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.004923 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.537915 B = 5686.443806 C = 6589.796832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 H 0.090 0.910 4 O -0.562 6.562 5 C -0.181 4.181 6 C 0.147 3.853 7 H 0.061 0.939 8 C -0.098 4.098 9 C -0.125 4.125 10 C 0.099 3.901 11 N -1.009 6.009 12 S 2.624 3.376 13 O -0.990 6.990 14 O -0.996 6.996 15 C -0.580 4.580 16 C 0.006 3.994 17 C -0.613 4.613 18 H 0.068 0.932 19 C -0.041 4.041 20 N -0.935 5.935 21 Si 1.123 2.877 22 H -0.264 1.264 23 H -0.264 1.264 24 H -0.285 1.285 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.388 0.612 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.000 1.000 40 H 0.002 0.998 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -4.536 -22.590 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.058 3.942 3 H 0.108 0.892 4 O -0.370 6.370 5 C -0.220 4.220 6 C 0.042 3.958 7 H 0.079 0.921 8 C -0.137 4.137 9 C -0.164 4.164 10 C -0.025 4.025 11 N -0.848 5.848 12 S 2.723 3.277 13 O -0.981 6.981 14 O -0.987 6.987 15 C -0.712 4.712 16 C -0.033 4.033 17 C -0.652 4.652 18 H 0.087 0.913 19 C -0.238 4.238 20 N -0.571 5.571 21 Si 0.942 3.058 22 H -0.188 1.188 23 H -0.188 1.188 24 H -0.210 1.210 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.237 0.763 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.018 0.982 40 H 0.021 0.979 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.385 -3.536 -20.913 21.478 hybrid contribution 0.493 -0.010 -0.448 0.666 sum 3.878 -3.546 -21.361 21.998 Atomic orbital electron populations 1.22490 0.95685 1.03407 1.02705 1.21586 0.93164 0.96165 0.83277 0.89163 1.86586 1.76997 1.30298 1.43118 1.22978 0.95617 1.03420 0.99963 1.21511 0.93421 0.97938 0.82922 0.92130 1.22642 0.96176 0.99636 0.95209 1.22794 0.97839 1.02833 0.92917 1.22341 0.92604 0.88565 0.98997 1.58564 1.59823 1.46342 1.20120 1.04312 0.75893 0.74931 0.72567 1.93486 1.84055 1.35666 1.84885 1.93486 1.48379 1.86539 1.70261 1.30351 1.18212 1.16125 1.06489 1.18983 0.97571 0.96758 0.90018 1.22295 1.18190 1.23046 1.01630 0.91347 1.27686 1.03860 0.98735 0.93551 1.70928 1.25418 1.22292 1.38485 0.82885 0.72354 0.74385 0.76150 1.18841 1.18839 1.21013 0.92478 0.91137 0.91036 0.76270 0.88509 0.92855 0.88393 0.89111 0.87088 0.91325 0.91262 0.89481 0.84103 0.84298 0.98166 0.97931 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 9.53 71.98 0.69 -2.28 16 2 C 0.12 2.03 3.57 30.59 0.11 2.14 16 3 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 4 O -0.56 -7.74 10.98 -148.98 -1.64 -9.38 16 5 C -0.18 -3.70 4.56 30.59 0.14 -3.56 16 6 C 0.15 3.30 2.72 45.34 0.12 3.42 16 7 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 8 C -0.10 -1.41 4.87 31.78 0.15 -1.26 16 9 C -0.12 -1.82 7.07 31.91 0.23 -1.59 16 10 C 0.10 2.07 7.10 86.78 0.62 2.69 16 11 N -1.01 -27.47 3.32 -484.67 -1.61 -29.08 16 12 S 2.62 99.77 5.12 -56.49 -0.29 99.48 16 13 O -0.99 -42.79 17.02 -127.65 -2.17 -44.96 16 14 O -1.00 -44.19 17.37 -127.65 -2.22 -46.41 16 15 C -0.58 -22.70 6.12 71.98 0.44 -22.26 16 16 C 0.01 0.29 4.29 29.85 0.13 0.42 16 17 C -0.61 -34.46 9.11 25.60 0.23 -34.23 16 18 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 19 C -0.04 -2.35 5.46 84.65 0.46 -1.89 16 20 N -0.93 -58.86 13.65 21.45 0.29 -58.57 16 21 Si 1.12 48.92 29.90 68.60 2.05 50.97 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.39 2.58 8.66 -74.05 -0.64 1.94 16 29 H 0.10 1.56 8.00 -2.39 -0.02 1.54 16 30 H 0.05 1.38 6.53 -2.39 -0.02 1.36 16 31 H 0.10 0.99 6.85 -2.39 -0.02 0.98 16 32 H 0.09 1.25 7.98 -2.39 -0.02 1.23 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.07 1.63 7.70 -2.39 -0.02 1.61 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 38 H 0.14 4.85 7.42 -2.39 -0.02 4.83 16 39 H 0.00 0.01 8.01 -2.38 -0.02 -0.01 16 40 H 0.00 0.14 8.01 -2.39 -0.02 0.12 16 41 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 Total: -1.00 -78.51 340.48 -1.79 -80.30 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.47 Total: 16.05 kcal Atomic # 6 Polarization: -61.72 SS G_CDS: 3.32 Total: -58.40 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -1.32 Total: -87.66 kcal Atomic # 8 Polarization: -94.72 SS G_CDS: -6.03 Total: -100.74 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.05 Total: 50.97 kcal Atomic # 16 Polarization: 99.77 SS G_CDS: -0.29 Total: 99.48 kcal Total: -78.51 -1.79 -80.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161664547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.476 kcal (2) G-P(sol) polarization free energy of solvation -78.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds