Wall clock time and date at job start Tue Mar 31 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47356 * 89.99617 * 8 7 6 10 10 O 1.21284 * 119.99786 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99836 * 180.02562 * 9 8 7 12 12 C 1.47063 * 136.06013 * 359.62781 * 11 9 8 13 13 C 1.53242 * 88.08702 * 207.20424 * 12 11 9 14 14 O 1.42899 * 114.01537 * 87.71078 * 13 12 11 15 15 C 1.50695 * 114.32851 * 220.47226 * 13 12 11 16 16 H 1.08001 * 120.00119 * 93.76084 * 15 13 12 17 17 C 1.37878 * 120.00034 * 273.75919 * 15 13 12 18 18 N 1.31518 * 119.99895 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00163 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47004 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47282 * 119.99759 * 19 17 15 22 22 H 1.48494 * 109.47179 * 239.99669 * 19 17 15 23 23 C 1.47073 * 136.05593 * 180.02562 * 11 9 8 24 24 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 25 25 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 26 26 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 28 28 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 30 30 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 31 31 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 32 32 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 33 33 H 1.09004 * 113.46899 * 321.93487 * 12 11 9 34 34 H 1.09007 * 113.46852 * 92.37573 * 12 11 9 35 35 H 0.96708 * 113.99566 * 86.39478 * 14 13 12 36 36 H 0.96997 * 119.99627 * 179.97438 * 18 17 15 37 37 H 1.09000 * 113.46372 * 267.62354 * 23 11 9 38 38 H 1.08999 * 113.46584 * 38.05786 * 23 11 9 39 39 H 1.07997 * 120.02798 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0624 2.6240 1.4214 10 8 5.2754 2.5804 2.3432 11 7 7.3855 2.6956 1.6677 12 6 8.6116 2.7563 0.8579 13 6 9.3547 2.1009 2.0269 14 8 9.3262 0.6724 2.0065 15 6 10.7260 2.6689 2.2874 16 1 10.8546 3.4583 3.0132 17 6 11.8165 2.1808 1.5993 18 7 11.6600 1.2192 0.7159 19 14 13.5164 2.8844 1.9227 20 1 13.4237 3.9481 2.9548 21 1 14.4158 1.8049 2.4032 22 1 14.0611 3.4600 0.6669 23 6 8.2389 2.7403 2.8646 24 6 3.4311 1.2848 0.0003 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3203 0.0108 29 1 1.3339 4.5114 0.0034 30 1 3.7922 4.6381 0.0022 31 1 5.9714 1.7294 -0.5140 32 1 5.8757 3.5068 -0.5126 33 1 8.5735 2.1321 -0.0349 34 1 8.9433 3.7733 0.6480 35 1 10.0304 0.2725 1.4779 36 1 12.4272 0.8761 0.2315 37 1 8.4702 3.7529 3.1951 38 1 7.8845 2.1026 3.6744 39 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186805700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:04 Heat of formation + Delta-G solvation = -57.634205 kcal Electronic energy + Delta-G solvation = -22611.244068 eV Core-core repulsion = 19099.755807 eV Total energy + Delta-G solvation = -3511.488262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23718 -39.50721 -37.95061 -36.90824 -33.99074 -32.50650 -32.19868 -30.52328 -29.12876 -27.54925 -26.90512 -25.14492 -24.95222 -22.53949 -21.43684 -20.07658 -18.33530 -17.68727 -17.40368 -16.34106 -16.24806 -15.98178 -15.79066 -15.39538 -14.89138 -14.86142 -14.26797 -13.95113 -13.77089 -13.25704 -13.11860 -12.72840 -12.67430 -12.30025 -12.06189 -12.03036 -11.62767 -11.56673 -11.42789 -11.13505 -11.08490 -10.97159 -10.81676 -10.48540 -10.25856 -9.64371 -9.22055 -8.82196 -8.71963 -8.38515 -8.16056 -7.82980 -6.41595 -4.51775 1.34073 1.51172 3.12557 3.18210 3.21953 3.23816 3.26581 3.52488 3.91865 4.17447 4.72651 4.76657 4.81532 4.96267 4.98475 5.05278 5.16348 5.27040 5.30588 5.37435 5.51819 5.59808 5.69031 5.80335 5.94236 6.06635 6.19974 6.30420 6.41346 6.44081 6.50538 6.61825 6.67212 6.69857 6.78882 7.10815 7.38504 7.61972 7.79932 8.50771 8.55251 8.79279 9.19796 9.48811 10.65077 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.036177 B = 0.003063 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.789757 B = 9140.345876 C = 9410.879369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.142 4.142 7 C -0.017 4.017 8 C -0.098 4.098 9 C 0.538 3.462 10 O -0.556 6.556 11 N -0.636 5.636 12 C 0.071 3.929 13 C 0.239 3.761 14 O -0.572 6.572 15 C -0.532 4.532 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.909 3.091 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.281 1.281 23 C 0.107 3.893 24 C -0.135 4.135 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.394 0.606 36 H 0.273 0.727 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 2.446 -5.650 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.231 4.231 5 C -0.100 4.100 6 C -0.160 4.160 7 C -0.017 4.017 8 C -0.138 4.138 9 C 0.327 3.673 10 O -0.435 6.435 11 N -0.370 5.370 12 C -0.052 4.052 13 C 0.197 3.803 14 O -0.385 6.385 15 C -0.570 4.570 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.015 4.015 24 C -0.154 4.154 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.222 2.182 -4.963 17.104 hybrid contribution 1.121 0.445 -0.374 1.263 sum -15.101 2.626 -5.337 16.230 Atomic orbital electron populations 1.23017 0.78726 1.03710 1.01181 1.86075 1.21110 1.27101 1.88916 1.18918 0.92161 0.84045 0.96879 1.21143 0.99655 0.92475 1.09870 1.20828 0.94414 0.96840 0.97917 1.20895 0.93751 0.97884 1.03483 1.19129 0.94027 0.92489 0.96082 1.20611 0.91986 1.05325 0.95874 1.19786 0.80265 0.76792 0.90462 1.90667 1.54357 1.52009 1.46488 1.49713 1.03605 1.70614 1.13049 1.24174 0.81036 1.01222 0.98789 1.19500 0.91262 0.80407 0.89130 1.86055 1.58014 1.18792 1.75604 1.21472 0.91160 1.20627 1.23784 0.90887 1.25087 1.00014 0.94368 0.93657 1.69271 1.31933 1.27202 1.25465 0.86256 0.82680 0.79098 0.78356 1.19424 1.20621 1.20672 1.23310 0.87911 1.00158 0.90129 1.20260 0.91354 0.98247 1.05503 0.92834 0.88412 0.92753 0.85797 0.85916 0.86035 0.87919 0.88077 0.91696 0.90059 0.74990 0.91628 0.89773 0.91631 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.23 10.50 -19.41 -0.20 -4.44 16 3 C 0.12 1.79 6.69 -39.22 -0.26 1.53 16 4 C -0.21 -2.63 9.04 -39.43 -0.36 -2.98 16 5 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 6 C -0.14 -1.97 9.70 -39.56 -0.38 -2.35 16 7 C -0.02 -0.26 4.37 -104.65 -0.46 -0.72 16 8 C -0.10 -1.54 5.66 -29.03 -0.16 -1.70 16 9 C 0.54 10.92 8.07 -10.98 -0.09 10.84 16 10 O -0.56 -13.05 16.81 5.55 0.09 -12.96 16 11 N -0.64 -13.38 3.69 -185.37 -0.68 -14.06 16 12 C 0.07 1.48 7.82 -8.64 -0.07 1.42 16 13 C 0.24 5.68 1.57 -91.40 -0.14 5.54 16 14 O -0.57 -14.72 13.53 -35.23 -0.48 -15.20 16 15 C -0.53 -13.14 8.69 -34.44 -0.30 -13.44 16 16 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.07 1.74 5.40 -17.82 -0.10 1.65 16 18 N -0.90 -22.41 11.01 55.43 0.61 -21.80 16 19 Si 0.91 19.16 29.54 -169.99 -5.02 14.13 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 C 0.11 2.35 8.03 -8.51 -0.07 2.28 16 24 C -0.13 -2.12 9.64 -39.43 -0.38 -2.50 16 25 H 0.05 0.37 7.68 -51.93 -0.40 -0.02 16 26 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 28 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.10 1.50 8.09 -51.93 -0.42 1.09 16 32 H 0.10 1.34 8.08 -51.93 -0.42 0.92 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.08 1.60 8.10 -51.92 -0.42 1.18 16 35 H 0.39 10.20 6.33 45.56 0.29 10.49 16 36 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 37 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -29.98 335.97 -7.39 -37.37 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -4.60 Total: 12.51 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.17 Total: -0.62 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.07 Total: -35.86 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.59 Total: -32.59 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.98 -7.39 -37.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186805700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.262 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds