Wall clock time and date at job start Tue Mar 31 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47356 * 89.99617 * 8 7 6 10 10 O 1.21284 * 119.99786 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99836 * 180.02562 * 9 8 7 12 12 C 1.47063 * 136.06013 * 359.62781 * 11 9 8 13 13 C 1.53242 * 88.08702 * 207.20424 * 12 11 9 14 14 O 1.42899 * 114.01537 * 87.71078 * 13 12 11 15 15 C 1.50695 * 114.32851 * 220.47226 * 13 12 11 16 16 H 1.08001 * 120.00119 * 93.76084 * 15 13 12 17 17 C 1.37878 * 120.00034 * 273.75919 * 15 13 12 18 18 N 1.31518 * 119.99895 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00163 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47004 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47282 * 119.99759 * 19 17 15 22 22 H 1.48494 * 109.47179 * 239.99669 * 19 17 15 23 23 C 1.47073 * 136.05593 * 180.02562 * 11 9 8 24 24 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 25 25 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 26 26 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 28 28 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 30 30 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 31 31 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 32 32 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 33 33 H 1.09004 * 113.46899 * 321.93487 * 12 11 9 34 34 H 1.09007 * 113.46852 * 92.37573 * 12 11 9 35 35 H 0.96708 * 113.99566 * 86.39478 * 14 13 12 36 36 H 0.96997 * 119.99627 * 179.97438 * 18 17 15 37 37 H 1.09000 * 113.46372 * 267.62354 * 23 11 9 38 38 H 1.08999 * 113.46584 * 38.05786 * 23 11 9 39 39 H 1.07997 * 120.02798 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0624 2.6240 1.4214 10 8 5.2754 2.5804 2.3432 11 7 7.3855 2.6956 1.6677 12 6 8.6116 2.7563 0.8579 13 6 9.3547 2.1009 2.0269 14 8 9.3262 0.6724 2.0065 15 6 10.7260 2.6689 2.2874 16 1 10.8546 3.4583 3.0132 17 6 11.8165 2.1808 1.5993 18 7 11.6600 1.2192 0.7159 19 14 13.5164 2.8844 1.9227 20 1 13.4237 3.9481 2.9548 21 1 14.4158 1.8049 2.4032 22 1 14.0611 3.4600 0.6669 23 6 8.2389 2.7403 2.8646 24 6 3.4311 1.2848 0.0003 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3203 0.0108 29 1 1.3339 4.5114 0.0034 30 1 3.7922 4.6381 0.0022 31 1 5.9714 1.7294 -0.5140 32 1 5.8757 3.5068 -0.5126 33 1 8.5735 2.1321 -0.0349 34 1 8.9433 3.7733 0.6480 35 1 10.0304 0.2725 1.4779 36 1 12.4272 0.8761 0.2315 37 1 8.4702 3.7529 3.1951 38 1 7.8845 2.1026 3.6744 39 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186805700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:03 Heat of formation + Delta-G solvation = -77.777933 kcal Electronic energy + Delta-G solvation = -22612.117566 eV Core-core repulsion = 19099.755807 eV Total energy + Delta-G solvation = -3512.361759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47523 -40.93759 -39.36555 -38.20072 -35.86985 -34.11664 -33.67380 -31.53678 -30.69937 -28.67311 -27.98625 -26.88207 -26.59912 -23.56165 -22.65311 -21.65312 -19.96150 -19.27071 -18.70504 -17.91573 -17.32160 -17.19882 -16.99856 -16.67303 -16.50206 -16.34808 -15.95719 -15.21128 -14.89927 -14.78996 -14.39927 -14.15040 -14.11699 -13.78996 -13.41710 -13.40075 -12.98211 -12.80115 -12.78632 -12.73601 -12.49258 -12.22352 -12.13498 -11.97824 -11.77563 -11.38840 -10.95557 -10.64886 -10.23619 -9.82008 -9.57112 -9.16694 -8.26637 -6.43495 0.28645 0.48016 1.46837 1.51699 1.61583 1.64275 1.97966 2.36403 2.41861 2.78777 2.95893 3.58474 3.65491 3.84118 3.86911 4.08441 4.15620 4.20419 4.31336 4.37327 4.38959 4.46926 4.50692 4.58442 4.63179 4.71258 4.76468 4.81667 4.93544 4.95498 5.05607 5.25845 5.29822 5.44166 5.60433 5.74168 5.80027 5.92149 6.45566 6.62718 6.89585 7.15483 7.30680 7.50153 8.79718 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.036177 B = 0.003063 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.789757 B = 9140.345876 C = 9410.879369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.113 3.887 4 C -0.209 4.209 5 C -0.079 4.079 6 C -0.154 4.154 7 C -0.036 4.036 8 C -0.088 4.088 9 C 0.532 3.468 10 O -0.592 6.592 11 N -0.638 5.638 12 C 0.087 3.913 13 C 0.216 3.784 14 O -0.588 6.588 15 C -0.550 4.550 16 H 0.074 0.926 17 C 0.031 3.969 18 N -0.917 5.917 19 Si 0.971 3.029 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.276 1.276 23 C 0.106 3.894 24 C -0.165 4.165 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.389 0.611 36 H 0.276 0.724 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.280 3.990 -6.477 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.068 3.932 4 C -0.228 4.228 5 C -0.097 4.097 6 C -0.172 4.172 7 C -0.036 4.036 8 C -0.127 4.127 9 C 0.324 3.676 10 O -0.473 6.473 11 N -0.371 5.371 12 C -0.036 4.036 13 C 0.175 3.825 14 O -0.401 6.401 15 C -0.588 4.588 16 H 0.093 0.907 17 C -0.169 4.169 18 N -0.558 5.558 19 Si 0.797 3.203 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.201 1.201 23 C -0.017 4.017 24 C -0.184 4.184 25 H 0.089 0.911 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.147 0.853 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.245 0.755 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.263 3.729 -5.801 18.590 hybrid contribution 1.336 -0.098 -0.081 1.342 sum -15.927 3.631 -5.882 17.363 Atomic orbital electron populations 1.23357 0.76271 1.05559 1.02390 1.86045 1.23732 1.26993 1.88835 1.19089 0.91988 0.85220 0.96910 1.21523 1.01197 0.91726 1.08336 1.21267 0.94074 0.98168 0.96162 1.21186 0.94743 0.97871 1.03403 1.19197 0.93830 0.93113 0.97485 1.20602 0.92515 1.06921 0.92671 1.20626 0.79474 0.75426 0.92077 1.90638 1.55046 1.53525 1.48135 1.49776 1.04063 1.70791 1.12507 1.23976 0.80228 1.01742 0.97654 1.19797 0.91877 0.79513 0.91297 1.86041 1.57912 1.20379 1.75783 1.21676 0.91931 1.21009 1.24193 0.90747 1.25775 1.03081 0.94631 0.93410 1.69330 1.32855 1.27776 1.25851 0.85295 0.78531 0.78246 0.78272 1.19102 1.20938 1.20108 1.23328 0.87706 1.00707 0.89963 1.20360 0.92511 0.98086 1.07435 0.91113 0.86464 0.91884 0.82710 0.82489 0.84573 0.87330 0.85297 0.91592 0.88365 0.75474 0.91353 0.87824 0.93343 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.90 10.50 -92.38 -0.97 -9.87 16 3 C 0.11 3.18 6.69 22.51 0.15 3.33 16 4 C -0.21 -4.68 9.04 22.37 0.20 -4.48 16 5 C -0.08 -1.72 10.04 22.25 0.22 -1.49 16 6 C -0.15 -4.00 9.70 22.28 0.22 -3.79 16 7 C -0.04 -1.09 4.37 -19.88 -0.09 -1.18 16 8 C -0.09 -2.70 5.66 29.10 0.16 -2.53 16 9 C 0.53 21.64 8.07 87.66 0.71 22.35 16 10 O -0.59 -28.16 16.81 -3.04 -0.05 -28.21 16 11 N -0.64 -26.73 3.69 -859.26 -3.17 -29.90 16 12 C 0.09 3.58 7.82 83.09 0.65 4.23 16 13 C 0.22 10.34 1.57 -11.30 -0.02 10.32 16 14 O -0.59 -30.94 13.53 -148.98 -2.02 -32.96 16 15 C -0.55 -27.00 8.69 25.60 0.22 -26.78 16 16 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 17 C 0.03 1.52 5.40 84.65 0.46 1.97 16 18 N -0.92 -45.62 11.01 21.45 0.24 -45.39 16 19 Si 0.97 38.70 29.54 68.60 2.03 40.73 16 20 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 23 C 0.11 4.67 8.03 83.17 0.67 5.33 16 24 C -0.17 -5.28 9.64 22.37 0.22 -5.07 16 25 H 0.07 0.80 7.68 -2.39 -0.02 0.78 16 26 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.06 0.82 7.65 -2.39 -0.02 0.80 16 28 H 0.16 2.39 6.30 -2.91 -0.02 2.37 16 29 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.11 3.18 8.09 -2.38 -0.02 3.16 16 32 H 0.13 3.18 8.08 -2.39 -0.02 3.16 16 33 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.10 3.71 8.10 -2.38 -0.02 3.69 16 35 H 0.39 20.65 6.33 -74.05 -0.47 20.18 16 36 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 37 H 0.10 4.10 8.10 -2.39 -0.02 4.09 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -64.76 335.97 1.54 -63.23 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.60 Total: 38.79 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 4.88 Total: 3.59 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -2.94 Total: -75.29 kcal Atomic # 8 Polarization: -68.00 SS G_CDS: -3.04 Total: -71.04 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -64.76 1.54 -63.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186805700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.550 kcal (2) G-P(sol) polarization free energy of solvation -64.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds