Wall clock time and date at job start Tue Mar 31 2020 03:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99853 * 2 1 4 4 H 1.08997 * 109.46959 * 30.00664 * 3 2 1 5 5 C 1.50696 * 109.47404 * 270.00619 * 3 2 1 6 6 O 1.21287 * 120.00145 * 354.99376 * 5 3 2 7 7 N 1.34782 * 120.00315 * 175.00109 * 5 3 2 8 8 C 1.47064 * 136.05263 * 359.62512 * 7 5 3 9 9 C 1.53241 * 88.08058 * 207.20381 * 8 7 5 10 10 O 1.42900 * 114.19647 * 87.72958 * 9 8 7 11 11 C 1.50703 * 114.32594 * 220.47126 * 9 8 7 12 12 H 1.08002 * 119.99862 * 99.24130 * 11 9 8 13 13 C 1.37876 * 120.00037 * 279.23570 * 11 9 8 14 14 N 1.31515 * 119.99724 * 10.19020 * 13 11 9 15 15 Si 1.86800 * 120.00028 * 190.18715 * 13 11 9 16 16 H 1.48497 * 109.46727 * 84.99879 * 15 13 11 17 17 H 1.48503 * 109.46923 * 204.99813 * 15 13 11 18 18 H 1.48500 * 109.47101 * 325.00055 * 15 13 11 19 19 C 1.47067 * 136.05885 * 179.97438 * 7 5 3 20 20 C 1.50704 * 109.47077 * 150.00469 * 3 2 1 21 21 C 1.38239 * 119.99911 * 220.00379 * 20 3 2 22 22 C 1.38230 * 120.00013 * 179.97438 * 21 20 3 23 23 C 1.38236 * 119.99722 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00203 * 359.97438 * 23 22 21 25 25 C 1.38225 * 120.00066 * 39.90857 * 20 3 2 26 26 H 1.08997 * 109.47060 * 299.99291 * 1 2 3 27 27 H 1.08995 * 109.47928 * 59.99582 * 1 2 3 28 28 H 1.09004 * 109.46737 * 180.02562 * 1 2 3 29 29 H 1.08999 * 113.47026 * 321.93664 * 8 7 5 30 30 H 1.09002 * 113.46603 * 92.37959 * 8 7 5 31 31 H 0.96701 * 113.99996 * 90.30920 * 10 9 8 32 32 H 0.97002 * 119.99491 * 179.97438 * 14 13 11 33 33 H 1.08996 * 113.46670 * 267.62306 * 19 7 5 34 34 H 1.08995 * 113.46497 * 38.00516 * 19 7 5 35 35 H 1.07999 * 119.99845 * 0.24859 * 21 20 3 36 36 H 1.08003 * 119.99848 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.99306 * 179.97438 * 23 22 21 38 38 H 1.07997 * 119.99484 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00168 * 0.09424 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2144 1.7645 -1.4207 6 8 1.9790 1.0107 -2.3414 7 7 2.6587 3.0126 -1.6685 8 6 3.0360 4.1821 -0.8606 9 6 2.6465 5.0654 -2.0507 10 8 1.2674 5.4386 -2.0765 11 6 3.5812 6.2214 -2.2979 12 1 4.3399 6.1483 -3.0631 13 6 3.4677 7.3724 -1.5473 14 7 2.6865 7.3932 -0.4895 15 14 4.4236 8.9021 -2.0328 16 1 3.6572 9.6616 -3.0530 17 1 4.6342 9.7549 -0.8354 18 1 5.7393 8.5057 -2.5959 19 6 2.9736 3.8064 -2.8659 20 6 3.3387 1.2639 0.7103 21 6 3.7063 2.2988 1.5498 22 6 4.9246 2.2605 2.2018 23 6 5.7750 1.1869 2.0147 24 6 5.4070 0.1515 1.1760 25 6 4.1887 0.1900 0.5240 26 1 -0.3633 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.4013 4.3291 0.0133 30 1 4.0988 4.2198 -0.6214 31 1 1.0749 6.2653 -1.6131 32 1 2.6070 8.2028 0.0388 33 1 4.0196 3.7430 -3.1658 34 1 2.2865 3.6336 -3.6942 35 1 3.0397 3.1352 1.6997 36 1 5.2119 3.0693 2.8573 37 1 6.7271 1.1572 2.5237 38 1 6.0717 -0.6870 1.0296 39 1 3.9016 -0.6186 -0.1319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186846068.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:10 Heat of formation + Delta-G solvation = -76.939344 kcal Electronic energy + Delta-G solvation = -23857.986702 eV Core-core repulsion = 20345.661307 eV Total energy + Delta-G solvation = -3512.325395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.70620 -40.28828 -39.33850 -38.05077 -35.93107 -34.21875 -33.36270 -31.83882 -30.58557 -28.59887 -27.53096 -26.89742 -26.18873 -23.48358 -22.96469 -21.83677 -20.14874 -19.31238 -18.42310 -17.93805 -17.88955 -17.13351 -16.91253 -16.60739 -15.98666 -15.95985 -15.52420 -15.44699 -15.10532 -14.79396 -14.42223 -14.26823 -14.04147 -13.91486 -13.65581 -13.51570 -13.28356 -12.81200 -12.72986 -12.51223 -12.24859 -12.20569 -12.09554 -11.88462 -11.84357 -11.13544 -10.82960 -10.56917 -10.25437 -9.84529 -9.69014 -9.62719 -8.26768 -6.41550 0.29183 0.47957 1.45778 1.47702 1.52222 1.59134 1.79538 2.41843 2.59217 2.88614 2.96012 3.42471 3.59456 3.69173 3.77089 4.08745 4.10571 4.15519 4.27763 4.39390 4.43200 4.44728 4.56995 4.60583 4.66643 4.72350 4.78860 4.85686 4.91620 4.99091 5.12897 5.21778 5.50948 5.54688 5.58858 5.71628 5.88476 5.91103 6.06167 6.62636 6.78549 7.04037 7.28899 7.31548 8.79088 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.005510 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.926704 B = 5080.169819 C = 6080.896323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.370 6.370 3 C 0.131 3.869 4 H 0.100 0.900 5 C 0.513 3.487 6 O -0.585 6.585 7 N -0.632 5.632 8 C 0.106 3.894 9 C 0.222 3.778 10 O -0.578 6.578 11 C -0.559 4.559 12 H 0.070 0.930 13 C 0.041 3.959 14 N -0.904 5.904 15 Si 0.961 3.039 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.270 1.270 19 C 0.105 3.895 20 C -0.102 4.102 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.106 4.106 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.114 0.886 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.385 0.615 32 H 0.275 0.725 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.126 0.874 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -7.948 8.497 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.288 6.288 3 C 0.070 3.930 4 H 0.117 0.883 5 C 0.303 3.697 6 O -0.467 6.467 7 N -0.366 5.366 8 C -0.017 4.017 9 C 0.181 3.819 10 O -0.386 6.386 11 C -0.597 4.597 12 H 0.088 0.912 13 C -0.161 4.161 14 N -0.542 5.542 15 Si 0.786 3.214 16 H -0.204 1.204 17 H -0.206 1.206 18 H -0.194 1.194 19 C -0.017 4.017 20 C -0.103 4.103 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.124 4.124 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.132 0.868 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.235 0.765 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.977 -9.190 7.886 12.471 hybrid contribution -0.106 1.491 -0.260 1.517 sum 2.871 -7.699 7.627 11.211 Atomic orbital electron populations 1.23078 0.79032 1.04725 1.00396 1.87919 1.21856 1.24629 1.94366 1.20578 0.95154 0.86960 0.90299 0.88270 1.21244 0.76896 0.79222 0.92371 1.90607 1.54617 1.53938 1.47536 1.49842 1.62566 1.11201 1.12963 1.23805 0.99748 0.80541 0.97565 1.19704 0.80810 0.90451 0.90924 1.86077 1.26607 1.46584 1.79382 1.21495 1.17633 0.99740 1.20822 0.91163 1.25647 0.95903 1.01126 0.93463 1.69809 1.39355 1.29713 1.15280 0.85522 0.79055 0.78974 0.77799 1.20388 1.20619 1.19417 1.23352 1.00448 0.88031 0.89902 1.19346 0.94152 0.97322 0.99466 1.21165 0.98345 0.97236 0.95947 1.21425 0.93362 0.99349 0.99740 1.21581 1.00370 0.93166 0.97605 1.21429 0.95782 1.00089 0.96990 1.21055 0.94558 0.97440 0.99392 0.91707 0.95366 0.86784 0.91697 0.89691 0.76460 0.91576 0.88273 0.92724 0.85637 0.83452 0.82770 0.83536 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 10.81 113.37 1.23 1.85 16 2 O -0.37 -12.62 9.21 -129.99 -1.20 -13.81 16 3 C 0.13 4.62 2.57 29.10 0.07 4.70 16 4 H 0.10 3.22 7.65 -2.39 -0.02 3.20 16 5 C 0.51 22.14 7.36 87.65 0.65 22.78 16 6 O -0.59 -28.98 17.28 15.94 0.28 -28.70 16 7 N -0.63 -27.37 3.66 -859.20 -3.15 -30.51 16 8 C 0.11 4.48 6.22 83.10 0.52 4.99 16 9 C 0.22 10.45 1.41 -11.28 -0.02 10.44 16 10 O -0.58 -28.79 13.56 -148.98 -2.02 -30.81 16 11 C -0.56 -27.13 8.65 25.60 0.22 -26.91 16 12 H 0.07 3.36 7.84 -2.91 -0.02 3.34 16 13 C 0.04 1.94 5.21 84.65 0.44 2.39 16 14 N -0.90 -43.27 11.81 21.45 0.25 -43.02 16 15 Si 0.96 38.10 29.55 68.60 2.03 40.13 16 16 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 19 C 0.11 4.69 8.04 83.19 0.67 5.36 16 20 C -0.10 -3.27 4.74 -19.87 -0.09 -3.36 16 21 C -0.11 -3.10 8.40 22.27 0.19 -2.92 16 22 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 23 C -0.11 -2.32 10.05 22.27 0.22 -2.09 16 24 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 25 C -0.11 -3.20 9.35 22.27 0.21 -3.00 16 26 H 0.06 1.42 8.08 -2.39 -0.02 1.41 16 27 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.06 2.71 7.36 -2.39 -0.02 2.69 16 30 H 0.09 3.54 8.10 -2.39 -0.02 3.52 16 31 H 0.38 19.01 7.09 -74.06 -0.53 18.48 16 32 H 0.27 12.49 8.31 -92.71 -0.77 11.72 16 33 H 0.10 4.08 8.10 -2.39 -0.02 4.06 16 34 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.13 3.52 7.11 -2.91 -0.02 3.50 16 36 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.11 3.61 7.78 -2.91 -0.02 3.59 16 Total: -1.00 -60.99 335.29 1.48 -59.51 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: 0.54 Total: 38.37 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.75 Total: 8.85 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -2.89 Total: -73.53 kcal Atomic # 8 Polarization: -70.38 SS G_CDS: -2.94 Total: -73.32 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -60.99 1.48 -59.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186846068.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.429 kcal (2) G-P(sol) polarization free energy of solvation -60.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds