Wall clock time and date at job start Tue Mar 31 2020 02:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.78028 * 2 1 4 4 C 1.55158 * 110.72128 * 123.23694 * 2 1 3 5 5 C 1.54689 * 101.67822 * 153.70245 * 4 2 1 6 6 N 1.47428 * 104.93918 * 323.27560 * 5 4 2 7 7 S 1.65600 * 125.64815 * 204.07182 * 6 5 4 8 8 O 1.42098 * 104.27576 * 153.62468 * 7 6 5 9 9 O 1.42102 * 104.27841 * 25.76595 * 7 6 5 10 10 C 1.81404 * 104.45074 * 269.69421 * 7 6 5 11 11 C 1.53000 * 109.46946 * 180.02562 * 10 7 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 7 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47116 * 59.99479 * 17 15 13 19 19 H 1.48490 * 109.47381 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46756 * 300.00079 * 17 15 13 21 21 C 1.47025 * 108.70490 * 23.81405 * 6 5 4 22 22 H 1.08998 * 109.88247 * 239.75032 * 21 6 5 23 23 C 1.52993 * 109.88677 * 118.73509 * 21 6 5 24 24 O 1.42905 * 109.47191 * 66.45581 * 23 21 6 25 25 H 1.09003 * 109.46919 * 183.24152 * 1 2 3 26 26 H 1.08999 * 109.47200 * 303.23800 * 1 2 3 27 27 H 1.08998 * 109.47090 * 63.24156 * 1 2 3 28 28 H 1.09004 * 111.00535 * 271.94118 * 4 2 1 29 29 H 1.09001 * 111.00448 * 35.75835 * 4 2 1 30 30 H 1.09005 * 110.39277 * 204.36641 * 5 4 2 31 31 H 1.08999 * 110.23864 * 82.11294 * 5 4 2 32 32 H 1.09002 * 109.47124 * 60.00022 * 10 7 6 33 33 H 1.09001 * 109.46975 * 300.00144 * 10 7 6 34 34 H 1.09001 * 109.47194 * 299.99756 * 11 10 7 35 35 H 1.08992 * 109.47399 * 59.99928 * 11 10 7 36 36 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 38 38 H 0.97000 * 119.99425 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.47311 * 186.45657 * 23 21 6 40 40 H 1.09000 * 109.47511 * 306.45876 * 23 21 6 41 41 H 0.96698 * 114.00410 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7954 1.2138 5 6 3.4600 -1.2539 0.6890 6 7 3.2445 -1.5507 -0.7389 7 16 4.1624 -2.5753 -1.6609 8 8 3.2775 -3.0157 -2.6818 9 8 4.7138 -3.4906 -0.7242 10 6 5.4610 -1.5172 -2.3571 11 6 6.3853 -2.3581 -3.2400 12 6 7.4809 -1.4657 -3.8266 13 6 8.3917 -2.2940 -4.6958 14 1 8.2077 -3.3514 -4.8173 15 6 9.4598 -1.7022 -5.3359 16 7 9.6836 -0.4146 -5.1884 17 14 10.5883 -2.7288 -6.4139 18 1 9.8012 -3.3369 -7.5166 19 1 11.6518 -1.8628 -6.9831 20 1 11.2094 -3.8032 -5.5982 21 6 2.0760 -0.7912 -1.2073 22 1 1.3130 -1.4758 -1.5776 23 6 2.4937 0.1729 -2.3194 24 8 2.9021 -0.5729 -3.4679 25 1 -0.3633 -1.0261 0.0581 26 1 -0.3633 0.5633 0.8595 27 1 -0.3633 0.4627 -0.9176 28 1 2.1850 -0.1518 2.0871 29 1 1.4449 -1.6532 1.4379 30 1 3.7889 -2.1490 1.2170 31 1 4.1916 -0.4542 0.8041 32 1 6.0385 -1.0705 -1.5477 33 1 5.0051 -0.7289 -2.9561 34 1 6.8412 -3.1466 -2.6413 35 1 5.8076 -2.8044 -4.0493 36 1 7.0253 -0.6770 -4.4253 37 1 8.0586 -1.0197 -3.0170 38 1 10.4348 0.0018 -5.6391 39 1 1.6505 0.8118 -2.5821 40 1 3.3229 0.7898 -1.9732 41 1 3.1814 -0.0248 -4.2140 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190696338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:22 Heat of formation + Delta-G solvation = -138.072583 kcal Electronic energy + Delta-G solvation = -22538.574648 eV Core-core repulsion = 19159.042267 eV Total energy + Delta-G solvation = -3379.532380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.44021 -36.85502 -36.23435 -35.48331 -34.54561 -32.74772 -32.11325 -30.50255 -27.72462 -27.43853 -24.10691 -23.64374 -22.05049 -20.74255 -20.27994 -18.60812 -17.44101 -17.26914 -16.71628 -16.39707 -15.64204 -15.25987 -14.70428 -14.46258 -14.37523 -14.06424 -13.91411 -13.65725 -13.22205 -12.62916 -12.47078 -12.29240 -12.14261 -11.99481 -11.73067 -11.63872 -11.54867 -11.33247 -11.20345 -11.08721 -11.01752 -10.89569 -10.86216 -10.79122 -10.34608 -10.11767 -9.84174 -9.41774 -9.18566 -8.81120 -8.37590 -6.03094 -4.05658 0.66368 2.92022 3.34016 3.37433 3.41170 3.86768 4.13999 4.22623 4.40829 4.45280 4.66136 4.69617 4.94133 5.04457 5.08327 5.15305 5.20885 5.25734 5.32718 5.33916 5.35937 5.44559 5.52061 5.68073 5.71264 5.77189 5.83628 5.98735 6.05114 6.16910 6.33862 6.51230 6.57874 6.95467 7.57580 7.60946 7.72169 7.95559 8.37064 9.00447 9.58704 11.08144 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029881 B = 0.003836 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.828057 B = 7297.991482 C = 7561.831789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.087 0.913 4 C -0.124 4.124 5 C 0.111 3.889 6 N -1.010 6.010 7 S 2.618 3.382 8 O -0.939 6.939 9 O -0.972 6.972 10 C -0.606 4.606 11 C -0.103 4.103 12 C 0.033 3.967 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.157 3.843 22 H 0.088 0.912 23 C 0.047 3.953 24 O -0.560 6.560 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.355 5.399 12.144 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.105 0.895 4 C -0.163 4.163 5 C -0.014 4.014 6 N -0.846 5.846 7 S 2.717 3.283 8 O -0.929 6.929 9 O -0.962 6.962 10 C -0.737 4.737 11 C -0.143 4.143 12 C -0.005 4.005 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.051 3.949 22 H 0.106 0.894 23 C -0.032 4.032 24 O -0.367 6.367 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -18.510 4.036 12.338 22.608 hybrid contribution 1.209 0.831 -1.033 1.794 sum -17.301 4.867 11.305 21.233 Atomic orbital electron populations 1.21788 0.93721 1.02470 1.02134 1.22198 0.96287 0.99399 0.93663 0.89496 1.22810 0.96058 1.00147 0.97259 1.21990 0.97560 1.01117 0.80756 1.58916 1.42194 1.63515 1.20008 1.04851 0.75387 0.74499 0.73608 1.93562 1.62189 1.78624 1.58524 1.93537 1.80475 1.59794 1.62424 1.30625 1.16003 1.15588 1.11505 1.21455 0.97374 0.98273 0.97176 1.19032 0.91525 0.94361 0.95612 1.21247 1.11180 0.95386 1.28533 0.92449 1.25015 0.97647 0.94983 0.96721 1.69953 1.29909 1.10016 1.43717 0.86619 0.80290 0.80108 0.80801 1.20105 1.21275 1.20131 1.21376 0.87997 0.92771 0.92772 0.89436 1.22818 0.99207 0.94100 0.87106 1.86677 1.87656 1.37152 1.25185 0.92121 0.92029 0.92217 0.89890 0.90431 0.89752 0.91666 0.86446 0.84832 0.92046 0.91617 0.96212 0.96326 0.92912 0.92243 0.92799 0.76633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.14 37.16 0.34 -0.53 16 2 C -0.10 -0.71 3.08 -88.78 -0.27 -0.98 16 3 H 0.09 0.54 7.86 -51.93 -0.41 0.13 16 4 C -0.12 -0.93 6.52 -24.70 -0.16 -1.09 16 5 C 0.11 1.14 7.06 -2.65 -0.02 1.12 16 6 N -1.01 -13.05 3.32 -104.54 -0.35 -13.40 16 7 S 2.62 44.59 4.86 -107.50 -0.52 44.07 16 8 O -0.94 -18.50 15.94 -65.76 -1.05 -19.55 16 9 O -0.97 -19.06 17.27 -57.54 -0.99 -20.05 16 10 C -0.61 -10.35 5.98 37.16 0.22 -10.12 16 11 C -0.10 -2.22 5.16 -26.73 -0.14 -2.36 16 12 C 0.03 0.86 4.97 -27.88 -0.14 0.72 16 13 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 17 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.16 1.70 2.71 -66.95 -0.18 1.51 16 22 H 0.09 1.06 7.82 -51.93 -0.41 0.65 16 23 C 0.05 0.46 6.30 37.15 0.23 0.70 16 24 O -0.56 -7.04 8.81 -55.45 -0.49 -7.53 16 25 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.59 8.02 -51.93 -0.42 0.17 16 30 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.12 1.82 8.14 -51.92 -0.42 1.40 16 33 H 0.13 2.07 5.84 -51.92 -0.30 1.77 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.39 3.44 9.12 45.56 0.42 3.86 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -36.39 339.88 -9.22 -45.61 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.13 Total: -0.14 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -0.53 Total: -24.87 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.39 Total: -39.48 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -2.53 Total: -47.13 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 44.59 SS G_CDS: -0.52 Total: 44.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.39 -9.22 -45.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190696338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.459 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds