Wall clock time and date at job start Tue Mar 31 2020 02:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.78028 * 2 1 4 4 C 1.55158 * 110.72128 * 123.23694 * 2 1 3 5 5 C 1.54689 * 101.67822 * 153.70245 * 4 2 1 6 6 N 1.47428 * 104.93918 * 323.27560 * 5 4 2 7 7 S 1.65600 * 125.64815 * 204.07182 * 6 5 4 8 8 O 1.42098 * 104.27576 * 153.62468 * 7 6 5 9 9 O 1.42102 * 104.27841 * 25.76595 * 7 6 5 10 10 C 1.81404 * 104.45074 * 269.69421 * 7 6 5 11 11 C 1.53000 * 109.46946 * 180.02562 * 10 7 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 7 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47116 * 59.99479 * 17 15 13 19 19 H 1.48490 * 109.47381 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46756 * 300.00079 * 17 15 13 21 21 C 1.47025 * 108.70490 * 23.81405 * 6 5 4 22 22 H 1.08998 * 109.88247 * 239.75032 * 21 6 5 23 23 C 1.52993 * 109.88677 * 118.73509 * 21 6 5 24 24 O 1.42905 * 109.47191 * 66.45581 * 23 21 6 25 25 H 1.09003 * 109.46919 * 183.24152 * 1 2 3 26 26 H 1.08999 * 109.47200 * 303.23800 * 1 2 3 27 27 H 1.08998 * 109.47090 * 63.24156 * 1 2 3 28 28 H 1.09004 * 111.00535 * 271.94118 * 4 2 1 29 29 H 1.09001 * 111.00448 * 35.75835 * 4 2 1 30 30 H 1.09005 * 110.39277 * 204.36641 * 5 4 2 31 31 H 1.08999 * 110.23864 * 82.11294 * 5 4 2 32 32 H 1.09002 * 109.47124 * 60.00022 * 10 7 6 33 33 H 1.09001 * 109.46975 * 300.00144 * 10 7 6 34 34 H 1.09001 * 109.47194 * 299.99756 * 11 10 7 35 35 H 1.08992 * 109.47399 * 59.99928 * 11 10 7 36 36 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 38 38 H 0.97000 * 119.99425 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.47311 * 186.45657 * 23 21 6 40 40 H 1.09000 * 109.47511 * 306.45876 * 23 21 6 41 41 H 0.96698 * 114.00410 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7954 1.2138 5 6 3.4600 -1.2539 0.6890 6 7 3.2445 -1.5507 -0.7389 7 16 4.1624 -2.5753 -1.6609 8 8 3.2775 -3.0157 -2.6818 9 8 4.7138 -3.4906 -0.7242 10 6 5.4610 -1.5172 -2.3571 11 6 6.3853 -2.3581 -3.2400 12 6 7.4809 -1.4657 -3.8266 13 6 8.3917 -2.2940 -4.6958 14 1 8.2077 -3.3514 -4.8173 15 6 9.4598 -1.7022 -5.3359 16 7 9.6836 -0.4146 -5.1884 17 14 10.5883 -2.7288 -6.4139 18 1 9.8012 -3.3369 -7.5166 19 1 11.6518 -1.8628 -6.9831 20 1 11.2094 -3.8032 -5.5982 21 6 2.0760 -0.7912 -1.2073 22 1 1.3130 -1.4758 -1.5776 23 6 2.4937 0.1729 -2.3194 24 8 2.9021 -0.5729 -3.4679 25 1 -0.3633 -1.0261 0.0581 26 1 -0.3633 0.5633 0.8595 27 1 -0.3633 0.4627 -0.9176 28 1 2.1850 -0.1518 2.0871 29 1 1.4449 -1.6532 1.4379 30 1 3.7889 -2.1490 1.2170 31 1 4.1916 -0.4542 0.8041 32 1 6.0385 -1.0705 -1.5477 33 1 5.0051 -0.7289 -2.9561 34 1 6.8412 -3.1466 -2.6413 35 1 5.8076 -2.8044 -4.0493 36 1 7.0253 -0.6770 -4.4253 37 1 8.0586 -1.0197 -3.0170 38 1 10.4348 0.0018 -5.6391 39 1 1.6505 0.8118 -2.5821 40 1 3.3229 0.7898 -1.9732 41 1 3.1814 -0.0248 -4.2140 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190696338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:22 Heat of formation + Delta-G solvation = -165.313571 kcal Electronic energy + Delta-G solvation = -22539.755905 eV Core-core repulsion = 19159.042267 eV Total energy + Delta-G solvation = -3380.713638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.21328 -38.19366 -37.22500 -36.95420 -36.42390 -34.15067 -33.49642 -31.26373 -29.63382 -28.16762 -25.61915 -24.79081 -23.02817 -22.16998 -21.27992 -19.80440 -18.73568 -18.45749 -18.12895 -17.61322 -17.10298 -16.59843 -16.41792 -15.78491 -15.45623 -15.09035 -14.77663 -14.48063 -14.39402 -14.05623 -13.83818 -13.57550 -13.30093 -13.19631 -13.07889 -12.96748 -12.94227 -12.72213 -12.64621 -12.61932 -12.31472 -12.11831 -11.86010 -11.75732 -11.60558 -11.50224 -11.39085 -11.06894 -10.89668 -10.57659 -9.90128 -8.23268 -6.34337 -0.68614 1.39405 1.42183 1.50165 1.73975 2.39478 2.85760 3.09849 3.10454 3.25098 3.63612 3.68502 3.82623 4.00552 4.06023 4.22804 4.30473 4.40554 4.47271 4.53930 4.60966 4.62662 4.67078 4.79328 4.86971 4.96785 5.03547 5.06730 5.12321 5.17377 5.23464 5.31871 5.43601 5.51477 5.58411 5.62622 5.78075 6.19373 6.80102 6.88059 7.34686 8.87991 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029881 B = 0.003836 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.828057 B = 7297.991482 C = 7561.831789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.108 0.892 4 C -0.117 4.117 5 C 0.097 3.903 6 N -1.009 6.009 7 S 2.638 3.362 8 O -0.970 6.970 9 O -1.002 7.002 10 C -0.602 4.602 11 C -0.102 4.102 12 C 0.036 3.964 13 C -0.555 4.555 14 H 0.057 0.943 15 C 0.005 3.995 16 N -0.928 5.928 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.268 1.268 21 C 0.146 3.854 22 H 0.068 0.932 23 C 0.041 3.959 24 O -0.591 6.591 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.150 0.850 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.006 0.994 37 H 0.001 0.999 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.066 6.499 12.903 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.126 0.874 4 C -0.156 4.156 5 C -0.027 4.027 6 N -0.848 5.848 7 S 2.736 3.264 8 O -0.960 6.960 9 O -0.993 6.993 10 C -0.733 4.733 11 C -0.141 4.141 12 C -0.002 4.002 13 C -0.593 4.593 14 H 0.076 0.924 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.193 1.193 21 C 0.040 3.960 22 H 0.086 0.914 23 C -0.037 4.037 24 O -0.400 6.400 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.131 0.869 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -19.221 5.133 13.092 23.816 hybrid contribution 1.375 0.544 -1.222 1.919 sum -17.845 5.677 11.870 22.172 Atomic orbital electron populations 1.21792 0.92661 1.02281 1.03224 1.22237 0.97015 0.99729 0.91582 0.87359 1.22844 0.93974 1.00571 0.98213 1.22332 1.00035 1.01408 0.78933 1.58559 1.41970 1.63337 1.20889 1.03914 0.74998 0.74465 0.73042 1.93515 1.62884 1.79693 1.59949 1.93492 1.81210 1.61522 1.63079 1.30566 1.15683 1.15478 1.11531 1.21265 0.96976 0.98065 0.97784 1.18912 0.92244 0.94372 0.94651 1.21707 1.12277 0.95867 1.29469 0.92425 1.25915 0.99190 0.96229 0.98014 1.70061 1.30607 1.11579 1.44565 0.85539 0.78230 0.78571 0.78980 1.19224 1.20390 1.19346 1.21710 0.86663 0.92886 0.94737 0.91419 1.23012 1.00715 0.93954 0.86064 1.86640 1.87964 1.38912 1.26478 0.93104 0.90203 0.91769 0.86922 0.90823 0.90985 0.89683 0.84817 0.83219 0.92384 0.91902 0.97571 0.98078 0.92573 0.89516 0.91594 0.75287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.14 71.98 0.66 -0.67 16 2 C -0.09 -1.01 3.08 -9.60 -0.03 -1.04 16 3 H 0.11 0.87 7.86 -2.39 -0.02 0.85 16 4 C -0.12 -1.42 6.52 31.91 0.21 -1.21 16 5 C 0.10 1.82 7.06 86.78 0.61 2.43 16 6 N -1.01 -25.12 3.32 -484.67 -1.61 -26.73 16 7 S 2.64 90.33 4.86 -56.49 -0.27 90.05 16 8 O -0.97 -38.94 15.94 -119.79 -1.91 -40.85 16 9 O -1.00 -39.89 17.27 -127.65 -2.21 -42.09 16 10 C -0.60 -20.48 5.98 71.98 0.43 -20.05 16 11 C -0.10 -4.46 5.16 30.59 0.16 -4.30 16 12 C 0.04 1.94 4.97 29.85 0.15 2.08 16 13 C -0.56 -32.35 9.11 25.60 0.23 -32.11 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 15 C 0.00 0.28 5.46 84.65 0.46 0.75 16 16 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 17 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C 0.15 2.93 2.71 45.34 0.12 3.05 16 22 H 0.07 1.62 7.82 -2.39 -0.02 1.60 16 23 C 0.04 0.73 6.30 71.98 0.45 1.19 16 24 O -0.59 -14.50 8.81 -129.65 -1.14 -15.64 16 25 H 0.05 0.58 8.10 -2.39 -0.02 0.56 16 26 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.96 8.02 -2.39 -0.02 0.94 16 30 H 0.07 1.52 7.67 -2.38 -0.02 1.50 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 33 H 0.15 4.58 5.84 -2.39 -0.01 4.56 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.40 6.91 9.12 -74.06 -0.68 6.24 16 Total: -1.00 -79.10 339.88 -1.04 -80.14 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.33 Total: 13.91 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 3.46 Total: -49.89 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.33 Total: -82.35 kcal Atomic # 8 Polarization: -93.33 SS G_CDS: -5.26 Total: -98.59 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 90.33 SS G_CDS: -0.27 Total: 90.05 kcal Total: -79.10 -1.04 -80.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190696338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.173 kcal (2) G-P(sol) polarization free energy of solvation -79.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds