Wall clock time and date at job start Tue Mar 31 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00262 * 2 1 4 4 C 1.53006 * 109.47265 * 293.32472 * 3 2 1 5 5 H 1.09000 * 110.01662 * 54.78057 * 4 3 2 6 6 C 1.54259 * 110.02904 * 293.33807 * 4 3 2 7 7 C 1.54891 * 104.19461 * 217.10404 * 6 4 3 8 8 C 1.54885 * 102.74773 * 37.94746 * 7 6 4 9 9 C 1.53871 * 110.03174 * 176.16853 * 4 3 2 10 10 H 1.08988 * 110.03843 * 238.61477 * 9 4 3 11 11 O 1.42906 * 110.03142 * 0.02562 * 9 4 3 12 12 S 1.65603 * 119.99726 * 180.02562 * 2 1 3 13 13 O 1.42107 * 104.27553 * 156.76116 * 12 2 1 14 14 O 1.42102 * 104.27830 * 28.90637 * 12 2 1 15 15 C 1.81392 * 104.45033 * 272.83625 * 12 2 1 16 16 C 1.53004 * 109.47187 * 180.02562 * 15 12 2 17 17 C 1.50703 * 109.47162 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99886 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99885 * 179.72509 * 17 16 15 20 20 N 1.31519 * 120.00347 * 0.27461 * 19 17 16 21 21 Si 1.86795 * 120.00191 * 180.27396 * 19 17 16 22 22 H 1.48502 * 109.46843 * 59.99878 * 21 19 17 23 23 H 1.48496 * 109.47507 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47098 * 300.00151 * 21 19 17 25 25 H 1.08998 * 109.47091 * 269.99385 * 1 2 3 26 26 H 1.08999 * 109.46970 * 30.00098 * 1 2 3 27 27 H 1.09002 * 109.47289 * 149.99783 * 1 2 3 28 28 H 1.08999 * 109.46866 * 53.32172 * 3 2 1 29 29 H 1.08995 * 109.47212 * 173.31756 * 3 2 1 30 30 H 1.09001 * 110.49320 * 335.78474 * 6 4 3 31 31 H 1.09007 * 110.48695 * 98.42868 * 6 4 3 32 32 H 1.09000 * 110.75475 * 279.62601 * 7 6 4 33 33 H 1.08998 * 110.75414 * 156.25879 * 7 6 4 34 34 H 1.09003 * 110.48516 * 203.38140 * 8 7 6 35 35 H 1.08990 * 110.60440 * 80.78869 * 8 7 6 36 36 H 0.96703 * 113.99615 * 179.97438 * 11 9 4 37 37 H 1.08994 * 109.47233 * 60.00200 * 15 12 2 38 38 H 1.09001 * 109.47166 * 299.99662 * 15 12 2 39 39 H 1.09003 * 109.46895 * 59.99997 * 16 15 12 40 40 H 1.08993 * 109.47121 * 299.99940 * 16 15 12 41 41 H 0.96995 * 120.00161 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 1.9580 1.9960 -1.3246 5 1 0.8883 2.1142 -1.4972 6 6 2.5972 1.2052 -2.4847 7 6 3.1467 2.2996 -3.4331 8 6 3.6755 3.3714 -2.4479 9 6 2.6435 3.3733 -1.3012 10 1 1.9067 4.1600 -1.4624 11 8 3.3040 3.5701 -0.0493 12 16 2.2930 -1.4342 -0.0006 13 8 3.5641 -1.1048 -0.5439 14 8 1.4242 -2.3402 -0.6667 15 6 2.4440 -1.8705 1.7535 16 6 3.2009 -3.1935 1.8867 17 6 3.3269 -3.5556 3.3442 18 1 2.9093 -2.9068 4.0998 19 6 3.9707 -4.7178 3.7125 20 7 4.4797 -5.5077 2.7924 21 14 4.1203 -5.1706 5.5186 22 1 2.7643 -5.3093 6.1080 23 1 4.8496 -6.4577 5.6476 24 1 4.8652 -4.1049 6.2360 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.8476 1.8902 0.8242 29 1 3.2631 1.0729 0.1196 30 1 3.4084 0.5768 -2.1168 31 1 1.8463 0.6010 -2.9940 32 1 2.3500 2.7067 -4.0557 33 1 3.9565 1.9069 -4.0479 34 1 3.7115 4.3483 -2.9303 35 1 4.6612 3.0953 -2.0736 36 1 3.7561 4.4215 0.0273 37 1 1.4503 -1.9746 2.1889 38 1 2.9899 -1.0858 2.2774 39 1 4.1947 -3.0889 1.4515 40 1 2.6555 -3.9784 1.3628 41 1 4.9323 -6.3255 3.0515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305333466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:54 Heat of formation + Delta-G solvation = -165.982777 kcal Electronic energy + Delta-G solvation = -22415.191933 eV Core-core repulsion = 19034.449276 eV Total energy + Delta-G solvation = -3380.742657 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16355 -38.19385 -37.20787 -36.85594 -35.91032 -35.62193 -33.14278 -30.98752 -28.48873 -27.70827 -27.46181 -24.80044 -23.44303 -21.77393 -20.56381 -19.89108 -19.17852 -18.46362 -18.02937 -17.23078 -17.10556 -16.60281 -16.42587 -15.72275 -15.57453 -15.21646 -14.94327 -14.69280 -14.44709 -14.23882 -13.80908 -13.68073 -13.45084 -13.25600 -13.09805 -12.91927 -12.81500 -12.64340 -12.46127 -12.31698 -12.25287 -12.15439 -11.95519 -11.86111 -11.75784 -11.47848 -11.41510 -11.12799 -10.67142 -10.65524 -9.84352 -8.27216 -6.42166 -0.69736 1.39694 1.43818 1.52072 1.76857 2.37410 2.84502 3.05565 3.18801 3.38841 3.56566 3.70981 3.87400 3.98077 4.07392 4.12410 4.38046 4.43351 4.49435 4.56481 4.65730 4.71383 4.74541 4.76253 4.83143 5.00196 5.00737 5.04146 5.15821 5.20624 5.23411 5.23848 5.27824 5.38926 5.51836 5.66096 5.72772 6.04346 6.70823 7.03987 7.28113 8.84995 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026112 B = 0.003903 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.026958 B = 7172.586294 C = 7383.282102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.999 5.999 3 C 0.136 3.864 4 C -0.101 4.101 5 H 0.101 0.899 6 C -0.143 4.143 7 C -0.120 4.120 8 C -0.155 4.155 9 C 0.111 3.889 10 H 0.086 0.914 11 O -0.580 6.580 12 S 2.609 3.391 13 O -0.986 6.986 14 O -0.995 6.995 15 C -0.592 4.592 16 C 0.022 3.978 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.004 4.004 20 N -0.934 5.934 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.263 1.263 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.394 0.606 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.005 0.995 40 H 0.005 0.995 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 22.359 -7.794 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.838 5.838 3 C 0.012 3.988 4 C -0.121 4.121 5 H 0.120 0.880 6 C -0.181 4.181 7 C -0.157 4.157 8 C -0.192 4.192 9 C 0.051 3.949 10 H 0.104 0.896 11 O -0.388 6.388 12 S 2.706 3.294 13 O -0.977 6.977 14 O -0.985 6.985 15 C -0.724 4.724 16 C -0.017 4.017 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.574 5.574 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.207 1.207 24 H -0.187 1.187 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.427 21.180 -8.496 23.999 hybrid contribution 0.543 -0.273 1.074 1.234 sum -6.884 20.907 -7.422 23.229 Atomic orbital electron populations 1.21798 0.77105 1.04675 1.03427 1.57275 1.15970 1.20456 1.90084 1.21219 0.96140 0.82959 0.98499 1.22236 1.01044 0.94128 0.94690 0.88049 1.22652 1.00270 0.98449 0.96755 1.22409 1.00771 0.95382 0.97158 1.23116 0.99232 1.00130 0.96770 1.22467 0.93462 0.95834 0.83100 0.89628 1.86531 1.72774 1.43516 1.35999 1.04787 0.73156 0.73306 0.78109 1.93486 1.43742 1.83042 1.77395 1.93473 1.66942 1.65068 1.73045 1.30420 1.10468 1.07861 1.23608 1.18806 0.94079 0.89775 0.99036 1.21488 1.37225 1.07336 0.92131 0.90725 1.26146 0.94594 0.96071 1.03384 1.70100 1.37879 1.13639 1.35755 0.85335 0.78954 0.77672 0.78124 1.18675 1.20745 1.18736 0.90896 0.88093 0.91225 0.88900 0.90888 0.92653 0.92323 0.89595 0.91854 0.89037 0.91878 0.75646 0.84326 0.84574 0.97671 0.97656 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 10.55 127.77 1.35 2.90 16 2 N -1.00 -27.52 3.00 -539.12 -1.62 -29.13 16 3 C 0.14 3.39 4.01 86.38 0.35 3.74 16 4 C -0.10 -2.05 2.97 -10.07 -0.03 -2.08 16 5 H 0.10 1.63 6.84 -2.39 -0.02 1.61 16 6 C -0.14 -3.56 6.16 31.67 0.20 -3.36 16 7 C -0.12 -2.17 6.91 31.88 0.22 -1.95 16 8 C -0.15 -2.36 6.55 31.67 0.21 -2.15 16 9 C 0.11 1.70 4.24 31.32 0.13 1.83 16 10 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 11 O -0.58 -9.59 11.43 -148.98 -1.70 -11.29 16 12 S 2.61 100.47 5.41 -56.49 -0.31 100.16 16 13 O -0.99 -43.05 14.87 -127.65 -1.90 -44.95 16 14 O -1.00 -43.60 16.64 -127.65 -2.12 -45.72 16 15 C -0.59 -24.15 6.12 71.98 0.44 -23.71 16 16 C 0.02 1.20 4.98 29.85 0.15 1.35 16 17 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 18 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 21 Si 0.98 44.03 29.54 68.60 2.03 46.06 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.48 6.74 -2.39 -0.02 1.46 16 27 H 0.07 1.65 6.94 -2.39 -0.02 1.63 16 28 H 0.09 1.97 7.70 -2.39 -0.02 1.95 16 29 H 0.07 2.19 6.69 -2.39 -0.02 2.18 16 30 H 0.05 1.79 6.02 -2.39 -0.01 1.78 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 36 H 0.39 3.07 9.11 -74.05 -0.67 2.40 16 37 H 0.14 4.98 8.14 -2.39 -0.02 4.96 16 38 H 0.14 5.01 8.14 -2.39 -0.02 4.99 16 39 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -78.07 338.12 -1.29 -79.36 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.34 Total: 17.35 kcal Atomic # 6 Polarization: -57.79 SS G_CDS: 3.70 Total: -54.09 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -1.33 Total: -86.88 kcal Atomic # 8 Polarization: -96.24 SS G_CDS: -5.72 Total: -101.96 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 100.47 SS G_CDS: -0.31 Total: 100.16 kcal Total: -78.07 -1.29 -79.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305333466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.623 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds