Wall clock time and date at job start Tue Mar 31 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46947 * 2 1 4 4 C 1.36936 * 119.99889 * 275.23976 * 3 2 1 5 5 H 1.08009 * 119.99862 * 146.58920 * 4 3 2 6 6 C 1.38811 * 120.00334 * 326.58819 * 4 3 2 7 7 N 1.31611 * 120.00056 * 336.11971 * 6 4 3 8 8 Si 1.86799 * 119.99970 * 156.12117 * 6 4 3 9 9 H 1.48499 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47355 * 120.00093 * 8 6 4 11 11 H 1.48501 * 109.46990 * 239.99938 * 8 6 4 12 12 S 1.65600 * 119.99822 * 95.24616 * 3 2 1 13 13 O 1.42105 * 104.27354 * 153.92355 * 12 3 2 14 14 O 1.42097 * 104.27942 * 26.07021 * 12 3 2 15 15 C 1.81397 * 104.44958 * 269.99277 * 12 3 2 16 16 C 1.53006 * 109.47207 * 179.97438 * 15 12 3 17 17 C 1.53000 * 109.47119 * 180.02562 * 16 15 12 18 18 C 1.53178 * 109.54378 * 65.44550 * 17 16 15 19 19 C 1.53088 * 109.16378 * 176.84593 * 18 17 16 20 20 O 1.42899 * 109.41694 * 302.39420 * 19 18 17 21 21 C 1.42908 * 114.09961 * 61.15168 * 20 19 18 22 22 C 1.53086 * 109.41710 * 298.84724 * 21 20 19 23 23 H 1.08999 * 109.47032 * 59.99719 * 1 2 3 24 24 H 1.09003 * 109.47497 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47119 * 300.00364 * 1 2 3 26 26 H 1.08996 * 109.46822 * 239.99947 * 2 1 3 27 27 H 1.08999 * 109.47032 * 120.00281 * 2 1 3 28 28 H 0.97004 * 120.00552 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46611 * 60.00643 * 15 12 3 30 30 H 1.08991 * 109.47403 * 300.00541 * 15 12 3 31 31 H 1.09002 * 109.46581 * 60.00280 * 16 15 12 32 32 H 1.08997 * 109.46773 * 300.00628 * 16 15 12 33 33 H 1.09001 * 109.61519 * 305.22316 * 17 16 15 34 34 H 1.09001 * 109.52246 * 296.75706 * 18 17 16 35 35 H 1.09001 * 109.52214 * 56.93747 * 18 17 16 36 36 H 1.08997 * 109.48336 * 182.40327 * 19 18 17 37 37 H 1.09005 * 109.47801 * 62.37246 * 19 18 17 38 38 H 1.08992 * 109.47898 * 178.86117 * 21 20 19 39 39 H 1.09009 * 109.48301 * 58.83355 * 21 20 19 40 40 H 1.08998 * 109.52564 * 297.70075 * 22 21 20 41 41 H 1.09002 * 109.52392 * 177.50949 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0628 -1.1810 5 1 1.9695 3.1282 -1.2109 6 6 2.4969 1.3846 -2.3396 7 7 3.1520 0.2457 -2.2620 8 14 2.0417 2.0883 -4.0090 9 1 1.3129 3.3689 -3.8244 10 1 3.2764 2.3302 -4.7978 11 1 1.1732 1.1249 -4.7321 12 16 2.4179 2.1181 1.4282 13 8 3.3745 3.1020 1.0591 14 8 2.7669 1.0444 2.2909 15 6 0.8780 2.9027 1.9790 16 6 1.1198 3.6249 3.3061 17 6 -0.1792 4.2862 3.7710 18 6 -1.2172 3.2066 4.0925 19 6 -2.4855 3.8735 4.6313 20 8 -2.1600 4.6507 5.7854 21 6 -1.2293 5.7058 5.5349 22 6 0.0895 5.1125 5.0325 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.3981 -0.2285 -3.0717 29 1 0.1105 2.1408 2.1151 30 1 0.5476 3.6212 1.2289 31 1 1.8875 4.3868 3.1703 32 1 1.4499 2.9061 4.0559 33 1 -0.5611 4.9362 2.9837 34 1 -1.4554 2.6490 3.1868 35 1 -0.8153 2.5273 4.8443 36 1 -3.2121 3.1075 4.9019 37 1 -2.9092 4.5217 3.8642 38 1 -1.0510 6.2597 6.4565 39 1 -1.6366 6.3782 4.7796 40 1 0.5177 4.4718 5.8032 41 1 0.7857 5.9180 4.7988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331148821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:33 Heat of formation + Delta-G solvation = -130.094716 kcal Electronic energy + Delta-G solvation = -22571.340687 eV Core-core repulsion = 19192.154252 eV Total energy + Delta-G solvation = -3379.186434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.59517 -36.03947 -35.81828 -35.71683 -34.75626 -31.65355 -31.39977 -30.86499 -29.21033 -25.67970 -24.56741 -23.70661 -22.23211 -21.33936 -20.14367 -18.37062 -17.23898 -16.47698 -16.19869 -16.14352 -15.51145 -15.45393 -14.87073 -14.70033 -14.42647 -14.02299 -13.61408 -13.31132 -12.80495 -12.71389 -12.54484 -12.27259 -12.19809 -11.90675 -11.52516 -11.43381 -11.26233 -11.02912 -10.99079 -10.95497 -10.88819 -10.82536 -10.50070 -10.44537 -10.35994 -10.14153 -9.98225 -9.76155 -9.55395 -8.99028 -7.66680 -6.20724 -3.89493 1.30845 3.20489 3.29418 3.32594 3.70844 3.91176 4.35135 4.50780 4.56080 4.68172 4.82066 4.85626 4.92287 5.01327 5.09089 5.20824 5.23131 5.35262 5.46530 5.48682 5.53030 5.66934 5.72223 5.82692 5.87619 5.93671 6.00943 6.06148 6.18983 6.22895 6.28639 6.36345 6.59379 6.91791 7.01318 7.30599 7.45587 7.83925 8.46289 9.06576 9.43400 10.81464 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.004340 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.451709 B = 6449.445733 C = 6568.464981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.847 5.847 4 C -0.289 4.289 5 H 0.090 0.910 6 C 0.038 3.962 7 N -0.860 5.860 8 Si 0.912 3.088 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.562 3.438 13 O -0.967 6.967 14 O -0.993 6.993 15 C -0.634 4.634 16 C -0.104 4.104 17 C -0.081 4.081 18 C -0.156 4.156 19 C 0.061 3.939 20 O -0.386 6.386 21 C 0.061 3.939 22 C -0.156 4.156 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.033 0.967 26 H 0.115 0.885 27 H 0.059 0.941 28 H 0.265 0.735 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 6.216 9.834 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.020 4.020 3 N -0.678 5.678 4 C -0.424 4.424 5 H 0.107 0.893 6 C -0.169 4.169 7 N -0.499 5.499 8 Si 0.739 3.261 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.208 1.208 12 S 2.661 3.339 13 O -0.957 6.957 14 O -0.983 6.983 15 C -0.760 4.760 16 C -0.142 4.142 17 C -0.101 4.101 18 C -0.194 4.194 19 C -0.016 4.016 20 O -0.305 6.305 21 C -0.015 4.015 22 C -0.193 4.193 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.133 0.867 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.630 6.077 10.428 15.441 hybrid contribution -0.747 0.443 -1.313 1.574 sum -10.377 6.520 9.115 15.273 Atomic orbital electron populations 1.22229 0.99035 1.00091 1.00885 1.21346 0.91240 0.84570 1.04890 1.52612 1.77131 1.20474 1.17592 1.19043 1.45176 0.93790 0.84359 0.89255 1.25263 0.95203 0.96883 0.99524 1.69990 1.34147 1.16928 1.28851 0.86128 0.78428 0.79057 0.82536 1.19364 1.20878 1.20755 1.06966 0.76462 0.75119 0.75360 1.93469 1.56507 1.63840 1.81852 1.93435 1.82058 1.53021 1.69764 1.30806 1.26057 1.12852 1.06292 1.21319 0.98371 0.99880 0.94657 1.21147 0.95226 0.96654 0.97039 1.22333 0.96118 0.98688 1.02219 1.22595 0.96350 0.94525 0.88117 1.87913 1.62896 1.45839 1.33839 1.22570 0.88710 0.89172 1.01095 1.22304 0.98295 1.00569 0.98163 0.92216 0.93359 0.94782 0.86736 0.92221 0.92474 0.85861 0.85509 0.90593 0.90764 0.90638 0.90280 0.90742 0.88910 0.93236 0.88983 0.93253 0.90755 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.21 37.16 0.38 -2.57 16 2 C 0.11 2.40 5.98 -4.04 -0.02 2.37 16 3 N -0.85 -20.34 2.78 -59.91 -0.17 -20.51 16 4 C -0.29 -7.45 8.78 -15.06 -0.13 -7.58 16 5 H 0.09 2.22 7.94 -52.48 -0.42 1.81 16 6 C 0.04 0.98 4.98 -17.43 -0.09 0.89 16 7 N -0.86 -23.33 11.28 55.49 0.63 -22.70 16 8 Si 0.91 19.93 29.62 -169.99 -5.03 14.90 16 9 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 S 2.56 56.48 5.39 -107.50 -0.58 55.90 16 13 O -0.97 -24.66 17.22 -57.54 -0.99 -25.65 16 14 O -0.99 -23.84 16.53 -57.54 -0.95 -24.80 16 15 C -0.63 -10.07 5.94 37.16 0.22 -9.85 16 16 C -0.10 -1.44 4.69 -26.73 -0.13 -1.57 16 17 C -0.08 -0.93 2.27 -90.44 -0.21 -1.14 16 18 C -0.16 -1.71 5.10 -26.59 -0.14 -1.84 16 19 C 0.06 0.61 6.84 37.20 0.25 0.86 16 20 O -0.39 -4.43 10.77 -35.23 -0.38 -4.81 16 21 C 0.06 0.58 6.84 37.20 0.25 0.83 16 22 C -0.16 -1.56 5.42 -26.59 -0.14 -1.71 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.54 6.98 -51.93 -0.36 0.17 16 26 H 0.12 2.85 5.31 -51.93 -0.28 2.57 16 27 H 0.06 1.33 6.81 -51.93 -0.35 0.97 16 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.12 1.76 5.49 -51.92 -0.29 1.47 16 30 H 0.13 1.89 8.14 -51.93 -0.42 1.46 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.84 6.75 -51.93 -0.35 0.49 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -32.13 335.40 -8.84 -40.97 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.67 Total: 2.93 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 0.26 Total: -21.29 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.46 Total: -43.21 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -2.32 Total: -55.25 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Atomic # 16 Polarization: 56.48 SS G_CDS: -0.58 Total: 55.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.13 -8.84 -40.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331148821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.125 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds