Wall clock time and date at job start Tue Mar 31 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46947 * 2 1 4 4 C 1.36936 * 119.99889 * 275.23976 * 3 2 1 5 5 H 1.08009 * 119.99862 * 146.58920 * 4 3 2 6 6 C 1.38811 * 120.00334 * 326.58819 * 4 3 2 7 7 N 1.31611 * 120.00056 * 336.11971 * 6 4 3 8 8 Si 1.86799 * 119.99970 * 156.12117 * 6 4 3 9 9 H 1.48499 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47355 * 120.00093 * 8 6 4 11 11 H 1.48501 * 109.46990 * 239.99938 * 8 6 4 12 12 S 1.65600 * 119.99822 * 95.24616 * 3 2 1 13 13 O 1.42105 * 104.27354 * 153.92355 * 12 3 2 14 14 O 1.42097 * 104.27942 * 26.07021 * 12 3 2 15 15 C 1.81397 * 104.44958 * 269.99277 * 12 3 2 16 16 C 1.53006 * 109.47207 * 179.97438 * 15 12 3 17 17 C 1.53000 * 109.47119 * 180.02562 * 16 15 12 18 18 C 1.53178 * 109.54378 * 65.44550 * 17 16 15 19 19 C 1.53088 * 109.16378 * 176.84593 * 18 17 16 20 20 O 1.42899 * 109.41694 * 302.39420 * 19 18 17 21 21 C 1.42908 * 114.09961 * 61.15168 * 20 19 18 22 22 C 1.53086 * 109.41710 * 298.84724 * 21 20 19 23 23 H 1.08999 * 109.47032 * 59.99719 * 1 2 3 24 24 H 1.09003 * 109.47497 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47119 * 300.00364 * 1 2 3 26 26 H 1.08996 * 109.46822 * 239.99947 * 2 1 3 27 27 H 1.08999 * 109.47032 * 120.00281 * 2 1 3 28 28 H 0.97004 * 120.00552 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46611 * 60.00643 * 15 12 3 30 30 H 1.08991 * 109.47403 * 300.00541 * 15 12 3 31 31 H 1.09002 * 109.46581 * 60.00280 * 16 15 12 32 32 H 1.08997 * 109.46773 * 300.00628 * 16 15 12 33 33 H 1.09001 * 109.61519 * 305.22316 * 17 16 15 34 34 H 1.09001 * 109.52246 * 296.75706 * 18 17 16 35 35 H 1.09001 * 109.52214 * 56.93747 * 18 17 16 36 36 H 1.08997 * 109.48336 * 182.40327 * 19 18 17 37 37 H 1.09005 * 109.47801 * 62.37246 * 19 18 17 38 38 H 1.08992 * 109.47898 * 178.86117 * 21 20 19 39 39 H 1.09009 * 109.48301 * 58.83355 * 21 20 19 40 40 H 1.08998 * 109.52564 * 297.70075 * 22 21 20 41 41 H 1.09002 * 109.52392 * 177.50949 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0628 -1.1810 5 1 1.9695 3.1282 -1.2109 6 6 2.4969 1.3846 -2.3396 7 7 3.1520 0.2457 -2.2620 8 14 2.0417 2.0883 -4.0090 9 1 1.3129 3.3689 -3.8244 10 1 3.2764 2.3302 -4.7978 11 1 1.1732 1.1249 -4.7321 12 16 2.4179 2.1181 1.4282 13 8 3.3745 3.1020 1.0591 14 8 2.7669 1.0444 2.2909 15 6 0.8780 2.9027 1.9790 16 6 1.1198 3.6249 3.3061 17 6 -0.1792 4.2862 3.7710 18 6 -1.2172 3.2066 4.0925 19 6 -2.4855 3.8735 4.6313 20 8 -2.1600 4.6507 5.7854 21 6 -1.2293 5.7058 5.5349 22 6 0.0895 5.1125 5.0325 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.3981 -0.2285 -3.0717 29 1 0.1105 2.1408 2.1151 30 1 0.5476 3.6212 1.2289 31 1 1.8875 4.3868 3.1703 32 1 1.4499 2.9061 4.0559 33 1 -0.5611 4.9362 2.9837 34 1 -1.4554 2.6490 3.1868 35 1 -0.8153 2.5273 4.8443 36 1 -3.2121 3.1075 4.9019 37 1 -2.9092 4.5217 3.8642 38 1 -1.0510 6.2597 6.4565 39 1 -1.6366 6.3782 4.7796 40 1 0.5177 4.4718 5.8032 41 1 0.7857 5.9180 4.7988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331148821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:32 Heat of formation + Delta-G solvation = -152.396775 kcal Electronic energy + Delta-G solvation = -22572.307776 eV Core-core repulsion = 19192.154252 eV Total energy + Delta-G solvation = -3380.153524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.39612 -37.88027 -37.63907 -36.74188 -36.56940 -33.52512 -32.28496 -31.82324 -30.89690 -26.72540 -26.43229 -24.47685 -23.54333 -22.71630 -21.00367 -20.18858 -18.98981 -18.12975 -17.50743 -17.01729 -16.86445 -16.74404 -16.36042 -15.95700 -15.57620 -15.29296 -14.99404 -14.52239 -14.35604 -14.09987 -13.75740 -13.62674 -13.42821 -13.10517 -13.08307 -12.91512 -12.77049 -12.65595 -12.56729 -12.50306 -12.22422 -12.05579 -11.94306 -11.90167 -11.58890 -11.46723 -11.31976 -11.14139 -10.83751 -10.42302 -9.53880 -8.12739 -5.87333 -0.37974 1.48309 1.51029 1.63010 2.17742 2.57624 2.98671 3.01039 3.26873 3.44170 3.56499 3.69879 3.80069 4.04726 4.09469 4.13450 4.35486 4.40191 4.46485 4.50395 4.57092 4.72805 4.73422 4.77039 4.78808 4.82763 4.89313 4.93897 4.98416 5.05338 5.16209 5.21650 5.33285 5.42008 5.53330 5.65933 6.00701 6.29546 6.54459 7.15372 7.50783 8.89330 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.004340 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.451709 B = 6449.445733 C = 6568.464981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.100 3.900 3 N -0.862 5.862 4 C -0.306 4.306 5 H 0.093 0.907 6 C -0.010 4.010 7 N -0.899 5.899 8 Si 0.974 3.026 9 H -0.255 1.255 10 H -0.290 1.290 11 H -0.275 1.275 12 S 2.553 3.447 13 O -1.013 7.013 14 O -1.023 7.023 15 C -0.593 4.593 16 C -0.111 4.111 17 C -0.078 4.078 18 C -0.159 4.159 19 C 0.059 3.941 20 O -0.405 6.405 21 C 0.059 3.941 22 C -0.155 4.155 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.265 0.735 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.079 7.668 10.301 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.027 4.027 3 N -0.693 5.693 4 C -0.440 4.440 5 H 0.111 0.889 6 C -0.213 4.213 7 N -0.540 5.540 8 Si 0.799 3.201 9 H -0.179 1.179 10 H -0.216 1.216 11 H -0.200 1.200 12 S 2.658 3.342 13 O -1.003 7.003 14 O -1.013 7.013 15 C -0.726 4.726 16 C -0.150 4.150 17 C -0.097 4.097 18 C -0.197 4.197 19 C -0.017 4.017 20 O -0.325 6.325 21 C -0.017 4.017 22 C -0.193 4.193 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.182 7.493 10.858 17.957 hybrid contribution 0.058 0.021 -1.303 1.305 sum -12.124 7.514 9.555 17.168 Atomic orbital electron populations 1.22112 0.95323 1.01961 1.01842 1.21355 0.94344 0.83900 1.03127 1.52723 1.77733 1.21051 1.17838 1.19314 1.45183 0.94110 0.85349 0.88938 1.26110 0.95047 0.97254 1.02916 1.70116 1.35692 1.18526 1.29667 0.85170 0.77842 0.78994 0.78115 1.17877 1.21645 1.20037 1.06801 0.78285 0.74508 0.74626 1.93411 1.60100 1.64295 1.82479 1.93393 1.83827 1.54413 1.69707 1.30394 1.20952 1.13441 1.07785 1.21489 1.00232 1.00014 0.93304 1.21141 0.93664 0.96964 0.97978 1.22371 0.96451 0.98516 1.02326 1.22685 0.96037 0.94901 0.88072 1.87894 1.63337 1.46454 1.34790 1.22700 0.87927 0.88913 1.02207 1.22310 0.99065 1.00658 0.97291 0.92685 0.91095 0.92270 0.89484 0.93071 0.92531 0.83345 0.83462 0.90469 0.90837 0.89569 0.89713 0.91522 0.87841 0.92132 0.87625 0.92138 0.91400 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 10.21 71.98 0.73 -4.51 16 2 C 0.10 4.51 5.98 86.38 0.52 5.03 16 3 N -0.86 -41.66 2.78 -343.46 -0.95 -42.61 16 4 C -0.31 -15.83 8.78 84.03 0.74 -15.09 16 5 H 0.09 4.59 7.94 -2.91 -0.02 4.57 16 6 C -0.01 -0.55 4.98 84.86 0.42 -0.12 16 7 N -0.90 -50.21 11.28 21.65 0.24 -49.97 16 8 Si 0.97 40.90 29.62 68.60 2.03 42.94 16 9 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 12 S 2.55 112.52 5.39 -56.49 -0.30 112.22 16 13 O -1.01 -52.59 17.22 -127.65 -2.20 -54.78 16 14 O -1.02 -49.85 16.53 -127.65 -2.11 -51.96 16 15 C -0.59 -17.24 5.94 71.98 0.43 -16.81 16 16 C -0.11 -2.83 4.69 30.60 0.14 -2.68 16 17 C -0.08 -1.53 2.27 -10.67 -0.02 -1.55 16 18 C -0.16 -2.97 5.10 30.68 0.16 -2.81 16 19 C 0.06 1.00 6.84 72.01 0.49 1.49 16 20 O -0.41 -8.19 10.77 -148.98 -1.60 -9.79 16 21 C 0.06 0.93 6.84 72.01 0.49 1.43 16 22 C -0.16 -2.69 5.42 30.68 0.17 -2.53 16 23 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.69 6.98 -2.39 -0.02 1.67 16 26 H 0.09 4.47 5.31 -2.39 -0.01 4.45 16 27 H 0.05 2.33 6.81 -2.39 -0.02 2.31 16 28 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.15 3.66 5.49 -2.39 -0.01 3.65 16 30 H 0.15 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.47 6.75 -2.39 -0.02 1.45 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -71.18 335.40 0.37 -70.81 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.00 Total: 21.33 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 4.27 Total: -38.17 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -0.71 Total: -92.58 kcal Atomic # 8 Polarization: -110.63 SS G_CDS: -5.91 Total: -116.54 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 112.52 SS G_CDS: -0.30 Total: 112.22 kcal Total: -71.18 0.37 -70.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331148821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.588 kcal (2) G-P(sol) polarization free energy of solvation -71.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds