Wall clock time and date at job start Tue Mar 31 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.70264 * 2 1 4 4 C 1.53194 * 109.58426 * 120.35457 * 2 1 3 5 5 C 1.53046 * 109.31304 * 174.42577 * 4 2 1 6 6 H 1.08994 * 109.45943 * 58.65161 * 5 4 2 7 7 C 1.52999 * 109.46057 * 178.61580 * 5 4 2 8 8 O 1.42897 * 109.47178 * 184.99967 * 7 5 4 9 9 C 1.53048 * 109.53398 * 298.63299 * 5 4 2 10 10 C 1.52753 * 109.38072 * 61.24018 * 9 5 4 11 11 N 1.46921 * 109.58959 * 239.64143 * 2 1 3 12 12 S 1.65602 * 120.62969 * 6.58360 * 11 2 1 13 13 O 1.42094 * 104.27730 * 321.30552 * 12 11 2 14 14 O 1.42103 * 104.27733 * 193.44668 * 12 11 2 15 15 C 1.81401 * 104.44920 * 77.37811 * 12 11 2 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 12 11 17 17 C 1.50707 * 109.46692 * 179.97438 * 16 15 12 18 18 H 1.07992 * 120.00454 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99617 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99905 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47339 * 59.99457 * 21 19 17 23 23 H 1.48504 * 109.47133 * 299.99685 * 21 19 17 24 24 H 1.48498 * 109.47325 * 179.97438 * 21 19 17 25 25 H 1.08996 * 109.47369 * 189.20601 * 1 2 3 26 26 H 1.09001 * 109.47411 * 309.21217 * 1 2 3 27 27 H 1.09004 * 109.47187 * 69.20864 * 1 2 3 28 28 H 1.09007 * 109.49470 * 294.37161 * 4 2 1 29 29 H 1.08996 * 109.50233 * 54.43740 * 4 2 1 30 30 H 1.09002 * 109.46686 * 304.99590 * 7 5 4 31 31 H 1.09004 * 109.47517 * 64.99311 * 7 5 4 32 32 H 0.96704 * 114.00163 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.49154 * 181.31972 * 9 5 4 34 34 H 1.08998 * 109.49396 * 301.38062 * 9 5 4 35 35 H 1.09002 * 109.50705 * 185.70378 * 10 9 5 36 36 H 1.09007 * 109.43501 * 65.42880 * 10 9 5 37 37 H 1.09001 * 109.47155 * 59.99551 * 15 12 11 38 38 H 1.09001 * 109.46858 * 299.99949 * 15 12 11 39 39 H 1.09000 * 109.47437 * 60.00174 * 16 15 12 40 40 H 1.09001 * 109.47093 * 299.99621 * 16 15 12 41 41 H 0.97000 * 119.99994 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0434 -0.7294 1.2455 5 6 3.5674 -0.8479 1.1703 6 1 4.0060 0.1474 1.0994 7 6 4.0871 -1.5454 2.4290 8 8 5.5160 -1.5525 2.4141 9 6 3.9569 -1.6658 -0.0634 10 6 3.4644 -0.9520 -1.3209 11 7 2.0225 -0.6996 -1.1944 12 16 0.9718 -1.2002 -2.3724 13 8 -0.1661 -1.6585 -1.6553 14 8 1.7399 -2.0883 -3.1728 15 6 0.5760 0.3093 -3.2972 16 6 -0.3999 -0.0258 -4.4269 17 6 -0.7292 1.2285 -5.1948 18 1 -0.2864 2.1702 -4.9062 19 6 -1.5957 1.1735 -6.2658 20 7 -2.1346 0.0265 -6.6176 21 14 -2.0034 2.7280 -7.2180 22 1 -0.7581 3.2973 -7.7929 23 1 -2.6251 3.7197 -6.3041 24 1 -2.9506 2.4028 -8.3145 25 1 -0.3634 -1.0144 0.1644 26 1 -0.3634 0.6497 0.7962 27 1 -0.3634 0.3648 -0.9608 28 1 1.7659 -0.1667 2.1369 29 1 1.6024 -1.7251 1.2918 30 1 3.7357 -1.0111 3.3117 31 1 3.7189 -2.5710 2.4545 32 1 5.9153 -1.9804 3.1839 33 1 5.0412 -1.7696 -0.1034 34 1 3.4987 -2.6530 -0.0048 35 1 3.6504 -1.5799 -2.1923 36 1 3.9929 -0.0050 -1.4309 37 1 1.4902 0.7277 -3.7183 38 1 0.1188 1.0369 -2.6265 39 1 -1.3140 -0.4439 -4.0054 40 1 0.0569 -0.7535 -5.0977 41 1 -1.9226 -0.7807 -6.1233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342006720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:33 Heat of formation + Delta-G solvation = -135.760181 kcal Electronic energy + Delta-G solvation = -22583.425234 eV Core-core repulsion = 19203.993127 eV Total energy + Delta-G solvation = -3379.432107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.32525 -37.10831 -36.74004 -35.49839 -34.26510 -33.21349 -32.36437 -31.01595 -27.65303 -26.35230 -25.01080 -23.16347 -22.14845 -21.47410 -20.36336 -18.53627 -17.66254 -17.27300 -16.59894 -16.26242 -15.86867 -15.30325 -15.08332 -14.66769 -14.35761 -13.83159 -13.77787 -13.55712 -13.23905 -12.96332 -12.84335 -12.57673 -12.40265 -12.10089 -11.94625 -11.61760 -11.50156 -11.27707 -11.07365 -10.99761 -10.77684 -10.70757 -10.51621 -10.46449 -10.29273 -10.21639 -10.14104 -10.03286 -8.99860 -8.59370 -8.45942 -6.47504 -4.20210 0.69912 2.95550 3.38838 3.40752 3.59932 3.86649 4.22822 4.45016 4.47200 4.47946 4.61208 4.77116 4.92556 4.97212 5.08343 5.20009 5.23476 5.27927 5.31476 5.45557 5.49473 5.55471 5.61520 5.67467 5.69256 5.78909 5.88297 5.94107 6.00879 6.19669 6.25854 6.35045 6.55783 6.73421 6.97468 7.07360 7.30890 7.96836 8.29994 8.72832 9.52131 10.92322 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.034622 B = 0.003760 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.537006 B = 7444.074185 C = 7517.239620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.156 3.844 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.086 4.086 6 H 0.079 0.921 7 C 0.080 3.920 8 O -0.573 6.573 9 C -0.122 4.122 10 C 0.115 3.885 11 N -1.003 6.003 12 S 2.590 3.410 13 O -0.961 6.961 14 O -0.969 6.969 15 C -0.586 4.586 16 C 0.016 3.984 17 C -0.600 4.600 18 H 0.055 0.945 19 C 0.016 3.984 20 N -0.905 5.905 21 Si 1.073 2.927 22 H -0.286 1.286 23 H -0.286 1.286 24 H -0.280 1.280 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.377 0.623 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.128 -0.692 19.086 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.050 3.950 3 H 0.092 0.908 4 C -0.159 4.159 5 C -0.105 4.105 6 H 0.097 0.903 7 C 0.002 3.998 8 O -0.378 6.378 9 C -0.161 4.161 10 C -0.010 4.010 11 N -0.840 5.840 12 S 2.690 3.310 13 O -0.951 6.951 14 O -0.959 6.959 15 C -0.719 4.719 16 C -0.023 4.023 17 C -0.639 4.639 18 H 0.073 0.927 19 C -0.189 4.189 20 N -0.541 5.541 21 Si 0.900 3.100 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.205 1.205 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.224 0.776 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.862 -0.721 17.130 20.296 hybrid contribution 1.128 -0.121 1.850 2.170 sum 11.990 -0.843 18.980 22.466 Atomic orbital electron populations 1.22749 0.92871 1.05864 1.03041 1.20908 0.94450 0.95330 0.84267 0.90846 1.21925 0.94333 1.01932 0.97752 1.21112 0.95280 1.00159 0.93936 0.90265 1.22246 0.80714 0.99271 0.97521 1.86482 1.19872 1.82755 1.48696 1.21781 1.01568 0.98992 0.93734 1.21363 0.79697 1.00574 0.99374 1.57984 1.17947 1.74483 1.33596 1.05684 0.73629 0.77816 0.73880 1.93585 1.51453 1.80268 1.69830 1.93501 1.70226 1.62171 1.70007 1.30458 1.10273 1.18760 1.12388 1.19059 0.92435 0.99520 0.91307 1.21847 1.31457 0.93763 1.16881 0.92693 1.25979 0.93410 1.03429 0.96076 1.70784 1.42317 0.99629 1.41331 0.83484 0.76523 0.73769 0.76177 1.21278 1.21277 1.20533 0.87960 0.91259 0.91958 0.90771 0.90906 0.93704 0.93618 0.77624 0.90125 0.91702 0.88299 0.91643 0.86171 0.86080 0.95798 0.95878 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 7.61 37.15 0.28 -2.16 16 2 C 0.16 1.85 3.51 -67.60 -0.24 1.61 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.12 -1.18 4.64 -26.61 -0.12 -1.30 16 5 C -0.09 -0.83 2.39 -90.57 -0.22 -1.04 16 6 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 7 C 0.08 0.64 6.43 37.16 0.24 0.88 16 8 O -0.57 -4.82 13.17 -35.23 -0.46 -5.28 16 9 C -0.12 -1.33 5.26 -26.83 -0.14 -1.47 16 10 C 0.12 1.43 6.45 -3.94 -0.03 1.41 16 11 N -1.00 -14.08 3.21 -106.72 -0.34 -14.42 16 12 S 2.59 47.39 4.84 -107.50 -0.52 46.87 16 13 O -0.96 -19.14 13.63 -57.54 -0.78 -19.92 16 14 O -0.97 -20.35 16.30 -57.54 -0.94 -21.28 16 15 C -0.59 -11.60 5.84 37.16 0.22 -11.38 16 16 C 0.02 0.41 4.29 -27.88 -0.12 0.29 16 17 C -0.60 -16.99 9.11 -34.44 -0.31 -17.30 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 20 N -0.91 -27.85 13.65 55.43 0.76 -27.10 16 21 Si 1.07 24.97 29.90 -169.99 -5.08 19.89 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.10 1.50 6.35 -51.93 -0.33 1.17 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.92 4.73 -51.93 -0.25 0.67 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.38 1.47 9.12 45.56 0.42 1.89 16 33 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.34 6.59 -51.93 -0.34 1.00 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.12 2.21 8.14 -51.92 -0.42 1.78 16 38 H 0.12 2.18 6.55 -51.92 -0.34 1.84 16 39 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 40 H 0.02 0.62 8.01 -51.93 -0.42 0.21 16 41 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -35.43 330.51 -8.73 -44.16 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.80 Total: 2.23 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: -0.54 Total: -30.12 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.41 Total: -41.52 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -2.19 Total: -46.49 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Atomic # 16 Polarization: 47.39 SS G_CDS: -0.52 Total: 46.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.43 -8.73 -44.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342006720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.602 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds