Wall clock time and date at job start Tue Mar 31 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.70264 * 2 1 4 4 C 1.53194 * 109.58426 * 120.35457 * 2 1 3 5 5 C 1.53046 * 109.31304 * 174.42577 * 4 2 1 6 6 H 1.08994 * 109.45943 * 58.65161 * 5 4 2 7 7 C 1.52999 * 109.46057 * 178.61580 * 5 4 2 8 8 O 1.42897 * 109.47178 * 184.99967 * 7 5 4 9 9 C 1.53048 * 109.53398 * 298.63299 * 5 4 2 10 10 C 1.52753 * 109.38072 * 61.24018 * 9 5 4 11 11 N 1.46921 * 109.58959 * 239.64143 * 2 1 3 12 12 S 1.65602 * 120.62969 * 6.58360 * 11 2 1 13 13 O 1.42094 * 104.27730 * 321.30552 * 12 11 2 14 14 O 1.42103 * 104.27733 * 193.44668 * 12 11 2 15 15 C 1.81401 * 104.44920 * 77.37811 * 12 11 2 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 12 11 17 17 C 1.50707 * 109.46692 * 179.97438 * 16 15 12 18 18 H 1.07992 * 120.00454 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99617 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99905 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47339 * 59.99457 * 21 19 17 23 23 H 1.48504 * 109.47133 * 299.99685 * 21 19 17 24 24 H 1.48498 * 109.47325 * 179.97438 * 21 19 17 25 25 H 1.08996 * 109.47369 * 189.20601 * 1 2 3 26 26 H 1.09001 * 109.47411 * 309.21217 * 1 2 3 27 27 H 1.09004 * 109.47187 * 69.20864 * 1 2 3 28 28 H 1.09007 * 109.49470 * 294.37161 * 4 2 1 29 29 H 1.08996 * 109.50233 * 54.43740 * 4 2 1 30 30 H 1.09002 * 109.46686 * 304.99590 * 7 5 4 31 31 H 1.09004 * 109.47517 * 64.99311 * 7 5 4 32 32 H 0.96704 * 114.00163 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.49154 * 181.31972 * 9 5 4 34 34 H 1.08998 * 109.49396 * 301.38062 * 9 5 4 35 35 H 1.09002 * 109.50705 * 185.70378 * 10 9 5 36 36 H 1.09007 * 109.43501 * 65.42880 * 10 9 5 37 37 H 1.09001 * 109.47155 * 59.99551 * 15 12 11 38 38 H 1.09001 * 109.46858 * 299.99949 * 15 12 11 39 39 H 1.09000 * 109.47437 * 60.00174 * 16 15 12 40 40 H 1.09001 * 109.47093 * 299.99621 * 16 15 12 41 41 H 0.97000 * 119.99994 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0434 -0.7294 1.2455 5 6 3.5674 -0.8479 1.1703 6 1 4.0060 0.1474 1.0994 7 6 4.0871 -1.5454 2.4290 8 8 5.5160 -1.5525 2.4141 9 6 3.9569 -1.6658 -0.0634 10 6 3.4644 -0.9520 -1.3209 11 7 2.0225 -0.6996 -1.1944 12 16 0.9718 -1.2002 -2.3724 13 8 -0.1661 -1.6585 -1.6553 14 8 1.7399 -2.0883 -3.1728 15 6 0.5760 0.3093 -3.2972 16 6 -0.3999 -0.0258 -4.4269 17 6 -0.7292 1.2285 -5.1948 18 1 -0.2864 2.1702 -4.9062 19 6 -1.5957 1.1735 -6.2658 20 7 -2.1346 0.0265 -6.6176 21 14 -2.0034 2.7280 -7.2180 22 1 -0.7581 3.2973 -7.7929 23 1 -2.6251 3.7197 -6.3041 24 1 -2.9506 2.4028 -8.3145 25 1 -0.3634 -1.0144 0.1644 26 1 -0.3634 0.6497 0.7962 27 1 -0.3634 0.3648 -0.9608 28 1 1.7659 -0.1667 2.1369 29 1 1.6024 -1.7251 1.2918 30 1 3.7357 -1.0111 3.3117 31 1 3.7189 -2.5710 2.4545 32 1 5.9153 -1.9804 3.1839 33 1 5.0412 -1.7696 -0.1034 34 1 3.4987 -2.6530 -0.0048 35 1 3.6504 -1.5799 -2.1923 36 1 3.9929 -0.0050 -1.4309 37 1 1.4902 0.7277 -3.7183 38 1 0.1188 1.0369 -2.6265 39 1 -1.3140 -0.4439 -4.0054 40 1 0.0569 -0.7535 -5.0977 41 1 -1.9226 -0.7807 -6.1233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342006720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:32 Heat of formation + Delta-G solvation = -163.374787 kcal Electronic energy + Delta-G solvation = -22584.622693 eV Core-core repulsion = 19203.993127 eV Total energy + Delta-G solvation = -3380.629566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20830 -38.49531 -37.58377 -37.05433 -36.33522 -34.09897 -33.37983 -32.95635 -28.60038 -27.38506 -26.83744 -24.16536 -23.87061 -22.63641 -21.19124 -19.90679 -19.19110 -18.32503 -17.99093 -17.57848 -17.39485 -16.30013 -15.97867 -15.68213 -15.57809 -15.32151 -15.27072 -14.89837 -14.83650 -14.12575 -14.05183 -13.93677 -13.57116 -13.35926 -13.32623 -13.00941 -12.85993 -12.64004 -12.45904 -12.28842 -12.23109 -12.02014 -11.91510 -11.76388 -11.70265 -11.50093 -11.21332 -10.80307 -10.79178 -10.64526 -9.94341 -8.77931 -6.52221 -0.79399 1.51758 1.60568 1.65271 1.80014 2.53159 2.74280 3.06671 3.12843 3.28493 3.46530 3.76674 3.82413 3.91803 4.05436 4.07554 4.14017 4.31815 4.35727 4.46462 4.51282 4.61998 4.70003 4.75804 4.76914 4.83098 4.84613 4.96380 4.99629 5.02535 5.09430 5.17664 5.27495 5.44834 5.51657 5.71765 5.78479 6.04440 6.41462 6.95241 7.31021 8.61565 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.034622 B = 0.003760 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.537006 B = 7444.074185 C = 7517.239620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.149 3.851 3 H 0.101 0.899 4 C -0.116 4.116 5 C -0.085 4.085 6 H 0.085 0.915 7 C 0.082 3.918 8 O -0.592 6.592 9 C -0.119 4.119 10 C 0.108 3.892 11 N -0.993 5.993 12 S 2.611 3.389 13 O -0.981 6.981 14 O -1.000 7.000 15 C -0.587 4.587 16 C 0.007 3.993 17 C -0.615 4.615 18 H 0.066 0.934 19 C -0.042 4.042 20 N -0.935 5.935 21 Si 1.123 2.877 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.284 1.284 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.040 0.960 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.396 0.604 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.004 0.996 40 H -0.001 1.001 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.482 1.502 21.170 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.045 3.955 3 H 0.119 0.881 4 C -0.155 4.155 5 C -0.104 4.104 6 H 0.104 0.896 7 C 0.004 3.996 8 O -0.400 6.400 9 C -0.158 4.158 10 C -0.017 4.017 11 N -0.833 5.833 12 S 2.710 3.290 13 O -0.971 6.971 14 O -0.991 6.991 15 C -0.718 4.718 16 C -0.032 4.032 17 C -0.654 4.654 18 H 0.085 0.915 19 C -0.239 4.239 20 N -0.571 5.571 21 Si 0.942 3.058 22 H -0.190 1.190 23 H -0.188 1.188 24 H -0.209 1.209 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.059 0.941 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.245 0.755 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.022 0.978 40 H 0.017 0.983 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.231 1.468 19.236 22.842 hybrid contribution 0.776 -0.848 1.311 1.744 sum 13.007 0.620 20.547 24.326 Atomic orbital electron populations 1.22754 0.94002 1.05198 1.03030 1.21251 0.93639 0.96781 0.83862 0.88094 1.21914 0.94412 1.01530 0.97673 1.21106 0.95075 1.00299 0.93887 0.89650 1.22200 0.80694 0.99382 0.97276 1.86423 1.20082 1.83215 1.50271 1.21762 1.01750 0.98484 0.93812 1.21593 0.78569 1.01825 0.99701 1.57679 1.18105 1.74623 1.32897 1.04785 0.73464 0.76913 0.73843 1.93576 1.52966 1.80542 1.69987 1.93454 1.70936 1.63169 1.71504 1.30415 1.09460 1.20795 1.11160 1.18958 0.93057 0.98285 0.92865 1.22330 1.31079 0.94957 1.17007 0.91526 1.27693 0.93127 1.05669 0.97421 1.70925 1.44056 1.00034 1.42105 0.82887 0.77271 0.70417 0.75207 1.18974 1.18776 1.20921 0.90085 0.88042 0.94065 0.87753 0.92076 0.91772 0.93624 0.75468 0.89448 0.92973 0.89979 0.89168 0.84702 0.84138 0.97787 0.98253 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.70 7.61 71.98 0.55 -4.15 16 2 C 0.15 3.13 3.51 44.97 0.16 3.29 16 3 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 4 C -0.12 -1.92 4.64 30.67 0.14 -1.77 16 5 C -0.09 -1.37 2.39 -10.76 -0.03 -1.39 16 6 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 7 C 0.08 1.06 6.43 71.98 0.46 1.52 16 8 O -0.59 -8.26 13.17 -148.98 -1.96 -10.22 16 9 C -0.12 -2.40 5.26 30.53 0.16 -2.24 16 10 C 0.11 2.52 6.45 86.22 0.56 3.07 16 11 N -0.99 -26.62 3.21 -491.56 -1.58 -28.20 16 12 S 2.61 97.04 4.84 -56.49 -0.27 96.77 16 13 O -0.98 -40.09 13.63 -127.65 -1.74 -41.83 16 14 O -1.00 -43.35 16.30 -127.65 -2.08 -45.43 16 15 C -0.59 -23.34 5.84 71.98 0.42 -22.92 16 16 C 0.01 0.38 4.29 29.85 0.13 0.51 16 17 C -0.62 -35.13 9.11 25.60 0.23 -34.90 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 19 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16 20 N -0.93 -59.23 13.65 21.45 0.29 -58.94 16 21 Si 1.12 49.59 29.90 68.60 2.05 51.64 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H 0.08 2.35 6.35 -2.39 -0.02 2.33 16 26 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.17 4.73 -2.38 -0.01 1.16 16 28 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.57 16 32 H 0.40 2.02 9.12 -74.05 -0.68 1.35 16 33 H 0.09 1.66 7.79 -2.39 -0.02 1.64 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 2.21 6.59 -2.39 -0.02 2.20 16 36 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.13 4.87 8.14 -2.39 -0.02 4.85 16 38 H 0.14 4.95 6.55 -2.39 -0.02 4.94 16 39 H 0.00 0.22 8.01 -2.39 -0.02 0.20 16 40 H 0.00 -0.04 8.01 -2.39 -0.02 -0.06 16 41 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 Total: -1.00 -78.51 330.51 -1.60 -80.11 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.44 Total: 17.06 kcal Atomic # 6 Polarization: -64.19 SS G_CDS: 3.24 Total: -60.95 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -1.29 Total: -87.14 kcal Atomic # 8 Polarization: -91.70 SS G_CDS: -5.78 Total: -97.48 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Atomic # 16 Polarization: 97.04 SS G_CDS: -0.27 Total: 96.77 kcal Total: -78.51 -1.60 -80.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342006720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.267 kcal (2) G-P(sol) polarization free energy of solvation -78.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds