Wall clock time and date at job start Tue Mar 31 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99620 * 2 1 4 4 C 1.53002 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47275 * 305.00472 * 4 3 2 6 6 C 1.53000 * 109.46800 * 65.00081 * 4 3 2 7 7 C 1.52996 * 109.47172 * 184.99984 * 4 3 2 8 8 S 1.81402 * 109.47311 * 175.00203 * 7 4 3 9 9 O 1.42097 * 110.54207 * 291.62564 * 8 7 4 10 10 O 1.42097 * 110.54184 * 68.37235 * 8 7 4 11 11 N 1.65598 * 104.44921 * 180.02562 * 8 7 4 12 12 C 1.46491 * 120.00387 * 64.99932 * 11 8 7 13 13 C 1.52995 * 109.47355 * 164.44024 * 12 11 8 14 14 C 1.50704 * 115.55138 * 65.11307 * 13 12 11 15 15 H 1.08001 * 119.99852 * 264.73450 * 14 13 12 16 16 C 1.37871 * 119.99748 * 84.73631 * 14 13 12 17 17 N 1.31516 * 120.00447 * 352.54065 * 16 14 13 18 18 Si 1.86810 * 120.00023 * 172.54087 * 16 14 13 19 19 H 1.48504 * 109.47006 * 89.99914 * 18 16 14 20 20 H 1.48497 * 109.47148 * 209.99809 * 18 16 14 21 21 H 1.48497 * 109.46929 * 330.00008 * 18 16 14 22 22 C 1.53006 * 117.49941 * 279.44811 * 13 12 11 23 23 C 1.53004 * 117.50335 * 210.78540 * 13 12 11 24 24 H 1.08998 * 109.47682 * 60.00190 * 1 2 3 25 25 H 1.09007 * 109.46761 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47217 * 299.99502 * 1 2 3 27 27 H 1.08994 * 109.47163 * 60.00561 * 3 2 1 28 28 H 1.09003 * 109.46997 * 300.00336 * 3 2 1 29 29 H 1.09003 * 109.47706 * 60.00408 * 6 4 3 30 30 H 1.09002 * 109.47190 * 179.97438 * 6 4 3 31 31 H 1.08998 * 109.47364 * 299.99554 * 6 4 3 32 32 H 1.08998 * 109.47311 * 55.00260 * 7 4 3 33 33 H 1.08999 * 109.47132 * 295.00039 * 7 4 3 34 34 H 0.97009 * 119.99249 * 244.99864 * 11 8 7 35 35 H 1.09000 * 109.47139 * 284.44017 * 12 11 8 36 36 H 1.09002 * 109.47090 * 44.43822 * 12 11 8 37 37 H 0.96999 * 120.00638 * 185.03794 * 17 16 14 38 38 H 1.09001 * 117.49611 * 359.97438 * 22 13 12 39 39 H 1.08992 * 117.49922 * 145.02008 * 22 13 12 40 40 H 1.08990 * 117.50415 * 214.98072 * 23 13 12 41 41 H 1.09007 * 117.49297 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8514 0.5683 0.8408 6 6 3.9951 0.5371 -1.3083 7 6 4.1572 2.5770 0.1251 8 16 5.9587 2.4236 0.2729 9 8 6.3082 1.8299 1.5157 10 8 6.5211 1.9570 -0.9458 11 7 6.4972 3.9844 0.4009 12 6 6.1315 4.7922 1.5669 13 6 7.0425 6.0190 1.6434 14 6 6.9025 7.0041 0.5116 15 1 7.5682 6.9498 -0.3371 16 6 5.9245 7.9748 0.5595 17 7 5.0226 7.9529 1.5164 18 14 5.8806 9.3212 -0.7347 19 1 5.0398 8.8821 -1.8774 20 1 5.3068 10.5570 -0.1441 21 1 7.2601 9.5947 -1.2115 22 6 8.4362 5.8277 2.2450 23 6 7.3590 6.5786 3.0318 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6884 1.8465 -0.8900 29 1 3.6791 1.1535 -2.1500 30 1 5.0817 0.4515 -1.3091 31 1 3.5521 -0.4548 -1.3979 32 1 3.7610 3.0734 1.0109 33 1 3.9141 3.1648 -0.7601 34 1 7.0548 4.3636 -0.2965 35 1 5.0945 5.1149 1.4746 36 1 6.2475 4.1965 2.4724 37 1 4.2923 8.5912 1.5093 38 1 8.7039 4.8278 2.5867 39 1 9.2517 6.4146 1.8225 40 1 7.4662 7.6591 3.1266 41 1 6.9178 6.0728 3.8908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349674539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:02 Heat of formation + Delta-G solvation = -128.519398 kcal Electronic energy + Delta-G solvation = -22076.791584 eV Core-core repulsion = 18697.673461 eV Total energy + Delta-G solvation = -3379.118123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.26722 -38.79379 -38.09676 -37.03400 -36.21202 -34.83155 -33.91160 -28.87154 -28.26323 -27.78987 -26.61414 -26.26317 -22.89240 -21.80011 -21.19638 -20.15016 -18.57707 -18.33011 -17.74554 -17.19686 -16.81883 -16.77990 -16.57296 -16.00774 -15.88326 -15.54209 -15.09772 -14.56351 -14.33140 -14.03032 -13.89446 -13.67373 -13.32286 -13.20216 -13.07128 -12.96980 -12.92281 -12.81488 -12.58566 -12.45517 -12.30672 -12.11803 -12.01450 -11.95905 -11.47926 -11.34731 -10.81672 -10.62634 -10.45276 -10.13323 -9.93607 -8.06752 -6.17536 -0.67007 1.43751 1.48858 1.55846 1.83559 2.45626 2.62653 2.95848 3.20357 3.25839 3.52176 3.57355 3.68826 3.92085 4.19922 4.21940 4.33422 4.45754 4.53222 4.57124 4.61328 4.63959 4.65111 4.69668 4.74442 4.84995 4.86528 4.87141 5.04193 5.06676 5.28828 5.29977 5.35685 5.64971 5.73915 5.82246 6.19441 6.28202 6.44662 6.87856 7.50793 9.00734 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.004557 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.108664 B = 6142.653937 C = 6893.449934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.072 3.928 4 C -0.082 4.082 5 H 0.088 0.912 6 C -0.178 4.178 7 C -0.613 4.613 8 S 2.621 3.379 9 O -0.995 6.995 10 O -0.984 6.984 11 N -1.103 6.103 12 C 0.164 3.836 13 C 0.014 3.986 14 C -0.506 4.506 15 H 0.055 0.945 16 C 0.036 3.964 17 N -0.901 5.901 18 Si 0.942 3.058 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.274 1.274 22 C -0.194 4.194 23 C -0.158 4.158 24 H 0.051 0.949 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.419 0.581 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.261 0.739 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 -11.179 -3.106 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C -0.005 4.005 4 C -0.102 4.102 5 H 0.106 0.894 6 C -0.235 4.235 7 C -0.745 4.745 8 S 2.717 3.283 9 O -0.985 6.985 10 O -0.974 6.974 11 N -0.863 5.863 12 C 0.037 3.963 13 C 0.013 3.987 14 C -0.544 4.544 15 H 0.073 0.927 16 C -0.166 4.166 17 N -0.538 5.538 18 Si 0.768 3.232 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.199 1.199 22 C -0.231 4.231 23 C -0.196 4.196 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.024 -12.047 -2.838 14.751 hybrid contribution -0.567 1.859 -0.733 2.077 sum -8.591 -10.188 -3.572 13.798 Atomic orbital electron populations 1.22942 0.79392 1.03915 1.00912 1.87817 1.21462 1.28208 1.95641 1.22535 0.91277 0.84797 1.01917 1.20830 0.96271 0.92355 1.00731 0.89414 1.22269 1.02035 1.02791 0.96447 1.30521 1.24077 1.05845 1.14059 1.04374 0.78296 0.72531 0.73096 1.93529 1.82592 1.76463 1.45956 1.93526 1.77183 1.79571 1.47164 1.55166 1.66459 1.32432 1.32195 1.20716 0.99050 0.91060 0.85443 1.19052 0.92228 0.94195 0.93268 1.20612 1.16740 1.12648 1.04421 0.92652 1.25517 0.95447 0.98689 0.96910 1.70042 1.13060 1.37425 1.33296 0.85817 0.78157 0.79471 0.79726 1.20051 1.21471 1.19930 1.23012 0.93579 1.00118 1.06385 1.22499 1.03455 0.98003 0.95672 0.93080 0.88353 0.93290 0.91855 0.91449 0.90578 0.92126 0.90048 0.83182 0.82545 0.74582 0.91974 0.92715 0.92972 0.89847 0.90346 0.91857 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.67 10.24 -148.98 -1.53 -10.20 16 3 C 0.07 1.43 5.32 71.98 0.38 1.81 16 4 C -0.08 -1.86 2.62 -10.79 -0.03 -1.89 16 5 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 6 C -0.18 -4.08 8.78 71.98 0.63 -3.45 16 7 C -0.61 -14.48 5.51 71.98 0.40 -14.08 16 8 S 2.62 82.90 5.11 -56.49 -0.29 82.61 16 9 O -1.00 -37.44 17.49 -127.65 -2.23 -39.67 16 10 O -0.98 -34.46 15.83 -127.65 -2.02 -36.48 16 11 N -1.10 -39.07 5.84 -187.51 -1.09 -40.16 16 12 C 0.16 6.54 5.96 86.38 0.52 7.06 16 13 C 0.01 0.65 1.43 -52.92 -0.08 0.57 16 14 C -0.51 -25.07 8.47 25.60 0.22 -24.86 16 15 H 0.06 2.74 7.83 -2.91 -0.02 2.72 16 16 C 0.04 1.78 5.38 84.65 0.46 2.24 16 17 N -0.90 -46.68 12.97 21.45 0.28 -46.40 16 18 Si 0.94 40.31 29.55 68.60 2.03 42.34 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C -0.19 -7.99 9.96 30.62 0.30 -7.69 16 23 C -0.16 -6.96 9.49 30.62 0.29 -6.67 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.57 5.61 -2.39 -0.01 1.56 16 31 H 0.08 1.72 7.82 -2.39 -0.02 1.70 16 32 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.16 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.42 14.98 8.34 -96.74 -0.81 14.18 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.05 2.10 7.63 -2.39 -0.02 2.08 16 37 H 0.26 13.01 8.32 -92.71 -0.77 12.24 16 38 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -62.53 351.81 -0.32 -62.85 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.20 Total: 30.48 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 4.34 Total: -45.36 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -0.82 Total: -86.56 kcal Atomic # 8 Polarization: -80.58 SS G_CDS: -5.78 Total: -86.36 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 82.90 SS G_CDS: -0.29 Total: 82.61 kcal Total: -62.53 -0.32 -62.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349674539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.671 kcal (2) G-P(sol) polarization free energy of solvation -62.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds