Wall clock time and date at job start Tue Mar 31 2020 02:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.52438 * 2 1 4 4 C 1.53089 * 109.52262 * 120.19431 * 2 1 3 5 5 O 1.42897 * 109.41656 * 62.29623 * 4 2 1 6 6 C 1.42898 * 114.10001 * 61.16248 * 5 4 2 7 7 C 1.53094 * 109.41211 * 298.84343 * 6 5 4 8 8 C 1.53175 * 109.16661 * 57.60371 * 7 6 5 9 9 H 1.09004 * 109.53853 * 62.89066 * 8 7 6 10 10 C 1.52998 * 109.54388 * 183.14993 * 8 7 6 11 11 N 1.46496 * 109.47748 * 294.55931 * 10 8 7 12 12 S 1.65591 * 120.00222 * 164.99657 * 11 10 8 13 13 O 1.42096 * 104.28081 * 181.07208 * 12 11 10 14 14 O 1.42094 * 104.28240 * 308.93240 * 12 11 10 15 15 C 1.81406 * 104.44902 * 65.00526 * 12 11 10 16 16 C 1.53006 * 109.47255 * 180.02562 * 15 12 11 17 17 C 1.50695 * 109.46867 * 179.97438 * 16 15 12 18 18 H 1.08005 * 120.00515 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99782 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99963 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47117 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46901 * 120.00449 * 21 19 17 24 24 H 1.48494 * 109.47219 * 240.00649 * 21 19 17 25 25 H 1.09000 * 109.47247 * 180.12070 * 1 2 3 26 26 H 1.09001 * 109.47685 * 300.12174 * 1 2 3 27 27 H 1.09004 * 109.47216 * 60.12478 * 1 2 3 28 28 H 1.09002 * 109.47970 * 182.28392 * 4 2 1 29 29 H 1.09002 * 109.48050 * 302.30874 * 4 2 1 30 30 H 1.09006 * 109.48424 * 58.82186 * 6 5 4 31 31 H 1.09002 * 109.48282 * 178.85030 * 6 5 4 32 32 H 1.09004 * 109.51815 * 297.69832 * 7 6 5 33 33 H 1.09006 * 109.52300 * 177.51290 * 7 6 5 34 34 H 1.09002 * 109.46652 * 54.56209 * 10 8 7 35 35 H 1.09007 * 109.46698 * 174.55726 * 10 8 7 36 36 H 0.97007 * 119.99477 * 345.00428 * 11 10 8 37 37 H 1.09008 * 109.46808 * 299.99911 * 15 12 11 38 38 H 1.08994 * 109.47264 * 59.99857 * 15 12 11 39 39 H 1.08998 * 109.46913 * 299.99588 * 16 15 12 40 40 H 1.09000 * 109.46950 * 59.99351 * 16 15 12 41 41 H 0.96996 * 119.99683 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7257 1.2471 5 8 1.6097 -2.0875 1.2150 6 6 2.0970 -2.8278 0.0940 7 6 1.5877 -2.1866 -1.1995 8 6 2.0418 -0.7245 -1.2488 9 1 3.1307 -0.6816 -1.2746 10 6 1.4716 -0.0533 -2.4999 11 7 2.0547 -0.6702 -3.6939 12 16 1.3653 -0.4158 -5.1778 13 8 2.1681 -1.1742 -6.0719 14 8 -0.0079 -0.7252 -4.9841 15 6 1.5814 1.3600 -5.4788 16 6 0.9771 1.7245 -6.8365 17 6 1.1561 3.1998 -7.0861 18 1 1.6516 3.8159 -6.3503 19 6 0.6881 3.7630 -8.2545 20 7 0.0852 3.0127 -9.1506 21 14 0.9105 5.5916 -8.5643 22 1 1.6149 6.2070 -7.4109 23 1 1.7134 5.7905 -9.7976 24 1 -0.4194 6.2308 -8.7309 25 1 -0.3634 -1.0277 0.0022 26 1 -0.3634 0.5157 0.8889 27 1 -0.3634 0.5119 -0.8911 28 1 3.1308 -0.6900 1.2672 29 1 1.6453 -0.2396 2.1387 30 1 3.1870 -2.8197 0.0990 31 1 1.7408 -3.8561 0.1549 32 1 0.4988 -2.2308 -1.2237 33 1 1.9941 -2.7233 -2.0568 34 1 0.3890 -0.1787 -2.5179 35 1 1.7142 1.0093 -2.4846 36 1 2.8445 -1.2278 -3.6151 37 1 1.0784 1.9254 -4.6941 38 1 2.6440 1.6023 -5.4769 39 1 1.4797 1.1592 -7.6213 40 1 -0.0856 1.4822 -6.8379 41 1 -0.2444 3.4089 -9.9724 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352344883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:59 Heat of formation + Delta-G solvation = -145.692729 kcal Electronic energy + Delta-G solvation = -21991.728841 eV Core-core repulsion = 18611.866027 eV Total energy + Delta-G solvation = -3379.862815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16108 -36.68804 -36.29609 -35.43441 -33.90517 -33.61771 -31.78415 -31.17174 -27.52616 -26.85651 -25.61407 -23.40712 -22.82715 -21.67720 -19.40095 -18.79260 -17.49554 -16.82056 -16.33203 -16.14928 -16.11980 -15.53142 -15.30696 -14.96683 -14.70286 -14.56157 -14.00825 -13.43145 -13.26580 -12.99178 -12.88898 -12.53318 -12.12723 -11.85278 -11.75684 -11.64293 -11.58390 -11.51766 -11.40953 -11.12078 -11.09845 -10.97051 -10.69343 -10.41919 -10.41439 -10.39494 -9.80175 -9.69794 -9.47472 -9.01970 -8.52046 -6.13922 -4.19487 0.78841 3.13806 3.24143 3.31431 3.34695 3.62228 4.20981 4.33802 4.36388 4.41374 4.47243 4.68974 4.73955 4.86585 5.03812 5.11112 5.20670 5.21383 5.26568 5.36664 5.39413 5.46545 5.51159 5.57797 5.64278 5.69246 5.72536 5.85562 5.92693 5.93971 6.06467 6.23464 6.47263 6.93379 7.07378 7.28885 7.34985 7.79219 8.16116 8.84165 9.45389 10.97166 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.003529 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.790081 B = 7932.858568 C = 8588.972791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 H 0.084 0.916 4 C 0.066 3.934 5 O -0.381 6.381 6 C 0.061 3.939 7 C -0.155 4.155 8 C -0.090 4.090 9 H 0.078 0.922 10 C 0.119 3.881 11 N -1.128 6.128 12 S 2.594 3.406 13 O -0.969 6.969 14 O -0.967 6.967 15 C -0.590 4.590 16 C 0.027 3.973 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.411 0.589 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.207 -7.508 20.313 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 H 0.102 0.898 4 C -0.010 4.010 5 O -0.300 6.300 6 C -0.016 4.016 7 C -0.193 4.193 8 C -0.110 4.110 9 H 0.097 0.903 10 C -0.008 4.008 11 N -0.885 5.885 12 S 2.691 3.309 13 O -0.959 6.959 14 O -0.956 6.956 15 C -0.723 4.723 16 C -0.012 4.012 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.244 0.756 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.417 -8.180 19.750 21.829 hybrid contribution 0.910 1.560 -0.276 1.827 sum 5.327 -6.620 19.475 21.248 Atomic orbital electron populations 1.21900 0.94053 1.02890 1.02018 1.21775 0.97623 1.00021 0.94767 0.89790 1.22598 0.98191 0.82441 0.97815 1.87926 1.74174 1.22448 1.45426 1.22595 0.97868 0.95607 0.85545 1.22311 1.03010 0.95596 0.98365 1.21394 1.00513 0.95262 0.93789 0.90331 1.21403 0.98921 0.96459 0.84001 1.55798 1.44341 1.64975 1.23382 1.05512 0.74137 0.78959 0.72302 1.93551 1.70164 1.69242 1.62941 1.93538 1.34072 1.83561 1.84471 1.30445 1.10385 1.20931 1.10544 1.18971 0.96486 0.99224 0.86513 1.21041 1.38706 0.92377 1.03824 0.92014 1.25076 0.94920 0.98577 0.95954 1.69965 1.38243 1.35685 1.08919 0.86412 0.77970 0.84619 0.78272 1.19660 1.20797 1.20779 0.91613 0.92602 0.91952 0.93279 0.88830 0.93324 0.88901 0.90172 0.90493 0.89797 0.91607 0.75610 0.86382 0.86148 0.94838 0.94802 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.36 37.15 0.31 -0.99 16 2 C -0.12 -0.95 2.79 -90.49 -0.25 -1.20 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.07 0.50 6.25 37.20 0.23 0.73 16 5 O -0.38 -3.64 10.18 -35.23 -0.36 -4.00 16 6 C 0.06 0.49 6.84 37.21 0.25 0.74 16 7 C -0.16 -1.38 4.91 -26.59 -0.13 -1.51 16 8 C -0.09 -0.77 2.08 -90.44 -0.19 -0.95 16 9 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 10 C 0.12 1.26 4.93 -4.05 -0.02 1.24 16 11 N -1.13 -13.77 5.47 -10.61 -0.06 -13.82 16 12 S 2.59 45.21 5.46 -107.50 -0.59 44.63 16 13 O -0.97 -19.83 18.08 -57.54 -1.04 -20.87 16 14 O -0.97 -19.72 17.50 -57.54 -1.01 -20.73 16 15 C -0.59 -11.06 6.01 37.16 0.22 -10.83 16 16 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 17 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 18 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H 0.06 0.63 6.14 -51.93 -0.32 0.31 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.56 6.50 -51.93 -0.34 0.22 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.80 6.63 -51.93 -0.34 0.46 16 33 H 0.08 0.67 7.67 -51.93 -0.40 0.28 16 34 H 0.08 0.98 6.23 -51.93 -0.32 0.65 16 35 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.41 4.16 8.38 -34.47 -0.29 3.88 16 37 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 38 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -34.84 337.87 -8.99 -43.83 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.63 Total: 0.82 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -0.12 Total: -25.34 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.68 Total: -39.50 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -2.41 Total: -45.61 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.59 Total: 44.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.84 -8.99 -43.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352344883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.862 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds