Wall clock time and date at job start Tue Mar 31 2020 02:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.52438 * 2 1 4 4 C 1.53089 * 109.52262 * 120.19431 * 2 1 3 5 5 O 1.42897 * 109.41656 * 62.29623 * 4 2 1 6 6 C 1.42898 * 114.10001 * 61.16248 * 5 4 2 7 7 C 1.53094 * 109.41211 * 298.84343 * 6 5 4 8 8 C 1.53175 * 109.16661 * 57.60371 * 7 6 5 9 9 H 1.09004 * 109.53853 * 62.89066 * 8 7 6 10 10 C 1.52998 * 109.54388 * 183.14993 * 8 7 6 11 11 N 1.46496 * 109.47748 * 294.55931 * 10 8 7 12 12 S 1.65591 * 120.00222 * 164.99657 * 11 10 8 13 13 O 1.42096 * 104.28081 * 181.07208 * 12 11 10 14 14 O 1.42094 * 104.28240 * 308.93240 * 12 11 10 15 15 C 1.81406 * 104.44902 * 65.00526 * 12 11 10 16 16 C 1.53006 * 109.47255 * 180.02562 * 15 12 11 17 17 C 1.50695 * 109.46867 * 179.97438 * 16 15 12 18 18 H 1.08005 * 120.00515 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99782 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99963 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47117 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46901 * 120.00449 * 21 19 17 24 24 H 1.48494 * 109.47219 * 240.00649 * 21 19 17 25 25 H 1.09000 * 109.47247 * 180.12070 * 1 2 3 26 26 H 1.09001 * 109.47685 * 300.12174 * 1 2 3 27 27 H 1.09004 * 109.47216 * 60.12478 * 1 2 3 28 28 H 1.09002 * 109.47970 * 182.28392 * 4 2 1 29 29 H 1.09002 * 109.48050 * 302.30874 * 4 2 1 30 30 H 1.09006 * 109.48424 * 58.82186 * 6 5 4 31 31 H 1.09002 * 109.48282 * 178.85030 * 6 5 4 32 32 H 1.09004 * 109.51815 * 297.69832 * 7 6 5 33 33 H 1.09006 * 109.52300 * 177.51290 * 7 6 5 34 34 H 1.09002 * 109.46652 * 54.56209 * 10 8 7 35 35 H 1.09007 * 109.46698 * 174.55726 * 10 8 7 36 36 H 0.97007 * 119.99477 * 345.00428 * 11 10 8 37 37 H 1.09008 * 109.46808 * 299.99911 * 15 12 11 38 38 H 1.08994 * 109.47264 * 59.99857 * 15 12 11 39 39 H 1.08998 * 109.46913 * 299.99588 * 16 15 12 40 40 H 1.09000 * 109.46950 * 59.99351 * 16 15 12 41 41 H 0.96996 * 119.99683 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7257 1.2471 5 8 1.6097 -2.0875 1.2150 6 6 2.0970 -2.8278 0.0940 7 6 1.5877 -2.1866 -1.1995 8 6 2.0418 -0.7245 -1.2488 9 1 3.1307 -0.6816 -1.2746 10 6 1.4716 -0.0533 -2.4999 11 7 2.0547 -0.6702 -3.6939 12 16 1.3653 -0.4158 -5.1778 13 8 2.1681 -1.1742 -6.0719 14 8 -0.0079 -0.7252 -4.9841 15 6 1.5814 1.3600 -5.4788 16 6 0.9771 1.7245 -6.8365 17 6 1.1561 3.1998 -7.0861 18 1 1.6516 3.8159 -6.3503 19 6 0.6881 3.7630 -8.2545 20 7 0.0852 3.0127 -9.1506 21 14 0.9105 5.5916 -8.5643 22 1 1.6149 6.2070 -7.4109 23 1 1.7134 5.7905 -9.7976 24 1 -0.4194 6.2308 -8.7309 25 1 -0.3634 -1.0277 0.0022 26 1 -0.3634 0.5157 0.8889 27 1 -0.3634 0.5119 -0.8911 28 1 3.1308 -0.6900 1.2672 29 1 1.6453 -0.2396 2.1387 30 1 3.1870 -2.8197 0.0990 31 1 1.7408 -3.8561 0.1549 32 1 0.4988 -2.2308 -1.2237 33 1 1.9941 -2.7233 -2.0568 34 1 0.3890 -0.1787 -2.5179 35 1 1.7142 1.0093 -2.4846 36 1 2.8445 -1.2278 -3.6151 37 1 1.0784 1.9254 -4.6941 38 1 2.6440 1.6023 -5.4769 39 1 1.4797 1.1592 -7.6213 40 1 -0.0856 1.4822 -6.8379 41 1 -0.2444 3.4089 -9.9724 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352344883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:59 Heat of formation + Delta-G solvation = -172.217867 kcal Electronic energy + Delta-G solvation = -21992.879058 eV Core-core repulsion = 18611.866027 eV Total energy + Delta-G solvation = -3381.013031 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.81355 -38.16584 -37.22029 -36.96361 -35.89043 -34.44553 -33.12192 -32.46443 -28.29381 -27.59564 -27.52801 -24.07471 -23.58057 -23.56119 -20.45810 -19.79820 -19.04991 -18.26670 -17.54367 -17.06705 -17.03406 -16.77195 -16.50951 -16.21555 -15.91291 -15.60955 -15.07845 -14.79655 -14.49023 -14.08101 -13.75447 -13.68173 -13.64659 -13.20105 -13.11297 -12.98192 -12.94947 -12.77426 -12.64267 -12.43672 -12.25115 -12.12062 -12.08494 -11.83276 -11.71699 -11.35332 -11.13079 -11.04141 -10.65595 -10.37858 -10.25898 -8.26117 -6.40072 -0.66059 1.41336 1.41835 1.55125 1.87969 2.38116 2.82062 3.04692 3.07562 3.28139 3.63767 3.75984 3.81556 4.00583 4.07592 4.14878 4.27740 4.39040 4.40826 4.45487 4.65100 4.72376 4.74908 4.79100 4.83739 4.86304 4.89493 5.03501 5.07287 5.24644 5.27937 5.28616 5.30598 5.32076 5.55296 5.68744 6.06232 6.16003 6.35000 6.74137 7.30275 8.86407 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.003529 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.790081 B = 7932.858568 C = 8588.972791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 H 0.101 0.899 4 C 0.063 3.937 5 O -0.401 6.401 6 C 0.061 3.939 7 C -0.158 4.158 8 C -0.085 4.085 9 H 0.098 0.902 10 C 0.107 3.893 11 N -1.106 6.106 12 S 2.621 3.379 13 O -1.001 7.001 14 O -0.999 6.999 15 C -0.588 4.588 16 C 0.018 3.982 17 C -0.538 4.538 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.975 3.025 22 H -0.255 1.255 23 H -0.279 1.279 24 H -0.278 1.278 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.424 0.576 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -6.134 22.342 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.138 4.138 3 H 0.119 0.881 4 C -0.013 4.013 5 O -0.320 6.320 6 C -0.016 4.016 7 C -0.196 4.196 8 C -0.105 4.105 9 H 0.116 0.884 10 C -0.018 4.018 11 N -0.868 5.868 12 S 2.718 3.282 13 O -0.991 6.991 14 O -0.989 6.989 15 C -0.720 4.720 16 C -0.021 4.021 17 C -0.577 4.577 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.575 5.575 21 Si 0.798 3.202 22 H -0.178 1.178 23 H -0.205 1.205 24 H -0.204 1.204 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.261 0.739 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.079 -6.806 21.788 23.622 hybrid contribution 0.382 1.068 -0.832 1.407 sum 6.461 -5.738 20.956 22.668 Atomic orbital electron populations 1.21906 0.95104 1.01957 1.02078 1.21787 0.96699 1.00916 0.94434 0.88061 1.22739 0.99092 0.81527 0.97963 1.87905 1.74734 1.23524 1.45882 1.22642 0.98643 0.95614 0.84664 1.22324 1.02001 0.96267 0.98990 1.21401 1.01503 0.94661 0.92922 0.88395 1.21700 0.98385 0.97872 0.83857 1.55244 1.44656 1.65002 1.21893 1.04384 0.73171 0.77842 0.72842 1.93500 1.70686 1.69845 1.65086 1.93498 1.36332 1.83751 1.85284 1.30336 1.11585 1.22729 1.07348 1.18837 0.95090 0.98502 0.89640 1.21558 1.38316 0.93564 1.04217 0.90503 1.26134 0.94511 1.03918 0.95792 1.70111 1.39605 1.38110 1.09631 0.85253 0.78074 0.78251 0.78595 1.17806 1.20463 1.20416 0.93085 0.91787 0.92648 0.91856 0.87899 0.91859 0.88564 0.91911 0.90523 0.91122 0.89455 0.73887 0.83953 0.83822 0.97607 0.97536 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.36 71.98 0.60 -1.84 16 2 C -0.12 -1.53 2.79 -10.71 -0.03 -1.56 16 3 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 4 C 0.06 0.79 6.25 72.01 0.45 1.24 16 5 O -0.40 -6.97 10.18 -148.98 -1.52 -8.48 16 6 C 0.06 0.88 6.84 72.01 0.49 1.37 16 7 C -0.16 -2.59 4.91 30.68 0.15 -2.44 16 8 C -0.08 -1.23 2.08 -10.68 -0.02 -1.25 16 9 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 10 C 0.11 2.04 4.93 86.38 0.43 2.46 16 11 N -1.11 -24.88 5.47 -187.49 -1.03 -25.91 16 12 S 2.62 90.46 5.46 -56.49 -0.31 90.15 16 13 O -1.00 -41.09 18.08 -127.65 -2.31 -43.40 16 14 O -1.00 -41.27 17.50 -127.65 -2.23 -43.50 16 15 C -0.59 -21.45 6.01 71.98 0.43 -21.02 16 16 C 0.02 0.94 4.98 29.85 0.15 1.09 16 17 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 18 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 19 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 20 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 21 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 22 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 H 0.05 0.96 6.14 -2.39 -0.01 0.94 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.94 6.50 -2.38 -0.02 0.93 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.25 6.63 -2.38 -0.02 1.23 16 33 H 0.08 1.23 7.67 -2.38 -0.02 1.22 16 34 H 0.07 1.57 6.23 -2.39 -0.01 1.56 16 35 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.42 7.57 8.38 -96.74 -0.81 6.76 16 37 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 38 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -76.34 337.87 -1.53 -77.87 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.20 Total: 15.90 kcal Atomic # 6 Polarization: -54.42 SS G_CDS: 3.35 Total: -51.07 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -0.74 Total: -82.43 kcal Atomic # 8 Polarization: -89.32 SS G_CDS: -6.06 Total: -95.38 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 90.46 SS G_CDS: -0.31 Total: 90.15 kcal Total: -76.34 -1.53 -77.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352344883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.349 kcal (2) G-P(sol) polarization free energy of solvation -76.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds