Wall clock time and date at job start Tue Mar 31 2020 02:59:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46503 * 119.99910 * 2 1
4 4 H 1.08996 * 110.53502 * 182.60792 * 3 2 1
5 5 C 1.55013 * 110.52070 * 305.27144 * 3 2 1
6 6 C 1.54894 * 102.75068 * 156.61580 * 5 3 2
7 7 C 1.54264 * 104.19615 * 322.04837 * 6 5 3
8 8 C 1.53876 * 106.60102 * 23.60756 * 7 6 5
9 9 H 1.09002 * 110.03428 * 240.71691 * 8 7 6
10 10 O 1.42905 * 110.03124 * 119.33472 * 8 7 6
11 11 S 1.65596 * 119.99759 * 179.97438 * 2 1 3
12 12 O 1.42106 * 104.27819 * 26.07704 * 11 2 1
13 13 O 1.42100 * 104.27298 * 153.92746 * 11 2 1
14 14 C 1.81395 * 104.45201 * 270.00105 * 11 2 1
15 15 C 1.53000 * 109.47129 * 180.02562 * 14 11 2
16 16 C 1.52997 * 109.46926 * 179.97438 * 15 14 11
17 17 C 1.50703 * 109.47010 * 180.02562 * 16 15 14
18 18 H 1.07996 * 119.99982 * 0.02562 * 17 16 15
19 19 C 1.37878 * 120.00211 * 180.02562 * 17 16 15
20 20 N 1.31519 * 119.99846 * 359.97438 * 19 17 16
21 21 Si 1.86797 * 120.00199 * 180.02562 * 19 17 16
22 22 H 1.48491 * 109.47170 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47066 * 119.99787 * 21 19 17
24 24 H 1.48505 * 109.47190 * 239.99863 * 21 19 17
25 25 H 1.08998 * 109.46934 * 89.99838 * 1 2 3
26 26 H 1.09000 * 109.47237 * 209.99957 * 1 2 3
27 27 H 1.09000 * 109.47072 * 330.00489 * 1 2 3
28 28 H 1.08997 * 110.76517 * 38.29726 * 5 3 2
29 29 H 1.08997 * 110.90480 * 274.99848 * 5 3 2
30 30 H 1.08995 * 110.48895 * 203.36605 * 6 5 3
31 31 H 1.09005 * 110.48599 * 80.72360 * 6 5 3
32 32 H 1.09002 * 110.03395 * 264.32063 * 7 6 5
33 33 H 1.09003 * 110.03429 * 142.89094 * 7 6 5
34 34 H 0.96700 * 113.99746 * 62.09490 * 10 8 7
35 35 H 1.08996 * 109.47151 * 300.00235 * 14 11 2
36 36 H 1.08998 * 109.47151 * 59.99963 * 14 11 2
37 37 H 1.08996 * 109.47284 * 300.00138 * 15 14 11
38 38 H 1.09007 * 109.47064 * 60.00025 * 15 14 11
39 39 H 1.09000 * 109.47829 * 300.00086 * 16 15 14
40 40 H 1.09005 * 109.47096 * 60.00748 * 16 15 14
41 41 H 0.96995 * 120.00058 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 1 3.2717 1.0901 -0.0464
5 6 1.7432 2.1585 -1.1853
6 6 2.1115 3.5838 -0.7036
7 6 1.7874 3.5690 0.8046
8 6 1.8417 2.0976 1.2515
9 1 0.8711 1.7892 1.6400
10 8 2.8463 1.9271 2.2534
11 16 2.2930 -1.4341 0.0006
12 8 1.3969 -2.3564 -0.6043
13 8 3.5394 -1.1194 -0.6048
14 6 2.5193 -1.8254 1.7574
15 6 3.2818 -3.1450 1.8918
16 6 3.4732 -3.4747 3.3735
17 6 4.2249 -4.7742 3.5060
18 1 4.5354 -5.3109 2.6218
19 6 4.5162 -5.2778 4.7560
20 7 4.1385 -4.6239 5.8328
21 14 5.4485 -6.8881 4.9202
22 1 5.7570 -7.4215 3.5691
23 1 6.7140 -6.6541 5.6612
24 1 4.6153 -7.8692 5.6608
25 1 -0.3633 0.0000 -1.0277
26 1 -0.3634 -0.8900 0.5138
27 1 -0.3633 0.8900 0.5138
28 1 0.6686 2.0704 -1.3449
29 1 2.2893 1.9047 -2.0938
30 1 1.5039 4.3289 -1.2170
31 1 3.1719 3.7787 -0.8640
32 1 0.7904 3.9748 0.9763
33 1 2.5279 4.1528 1.3514
34 1 2.6848 2.4320 3.0622
35 1 3.0865 -1.0279 2.2371
36 1 1.5451 -1.9178 2.2375
37 1 2.7150 -3.9428 1.4120
38 1 4.2561 -3.0522 1.4118
39 1 4.0404 -2.6769 3.8531
40 1 2.4992 -3.5675 3.8539
41 1 4.3431 -4.9784 6.7122
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000352596326.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:59:18
Heat of formation + Delta-G solvation = -140.058477 kcal
Electronic energy + Delta-G solvation = -22265.330731 eV
Core-core repulsion = 18885.712236 eV
Total energy + Delta-G solvation = -3379.618495 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 291.134 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.47103 -36.89597 -35.95112 -35.64402 -34.60130 -34.32645 -32.13778 -28.55197
-27.82139 -27.70919 -25.83947 -23.63103 -21.09051 -20.77120 -20.25020 -18.87719
-17.94376 -16.91332 -16.65651 -16.56989 -15.69774 -15.59300 -15.37792 -14.46986
-14.28325 -14.04283 -13.79492 -13.45257 -12.96733 -12.76158 -12.64948 -12.53870
-12.23033 -12.17568 -11.89246 -11.71620 -11.70159 -11.46692 -11.36586 -11.19707
-10.90958 -10.90730 -10.84087 -10.77942 -10.35703 -10.13619 -9.90170 -9.46904
-9.18079 -8.88472 -8.37885 -6.02635 -4.05340 0.49137 2.72973 3.31453
3.38761 3.44095 3.88359 4.04757 4.24547 4.28531 4.44724 4.45697
4.65345 4.75357 4.99950 5.12759 5.13056 5.20470 5.26530 5.28279
5.33486 5.34491 5.40093 5.52440 5.57490 5.64596 5.69577 5.81929
5.92207 5.99060 6.13195 6.31366 6.50861 6.52652 6.92731 7.48116
7.61764 7.72142 7.95988 8.36726 9.01174 9.59105 11.08677
Molecular weight = 291.13amu
Principal moments of inertia in cm(-1)
A = 0.025168 B = 0.003814 C = 0.003528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1112.237875 B = 7339.509314 C = 7935.244068
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.092 3.908
2 N -0.999 5.999
3 C 0.149 3.851
4 H 0.119 0.881
5 C -0.129 4.129
6 C -0.121 4.121
7 C -0.156 4.156
8 C 0.082 3.918
9 H 0.068 0.932
10 O -0.561 6.561
11 S 2.596 3.404
12 O -0.961 6.961
13 O -0.959 6.959
14 C -0.606 4.606
15 C -0.105 4.105
16 C 0.031 3.969
17 C -0.524 4.524
18 H 0.058 0.942
19 C 0.057 3.943
20 N -0.895 5.895
21 Si 0.894 3.106
22 H -0.271 1.271
23 H -0.283 1.283
24 H -0.284 1.284
25 H 0.058 0.942
26 H 0.074 0.926
27 H 0.069 0.931
28 H 0.077 0.923
29 H 0.078 0.922
30 H 0.069 0.931
31 H 0.072 0.928
32 H 0.069 0.931
33 H 0.076 0.924
34 H 0.380 0.620
35 H 0.133 0.867
36 H 0.124 0.876
37 H 0.064 0.936
38 H 0.065 0.935
39 H 0.021 0.979
40 H 0.020 0.980
41 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.852 18.773 -10.431 23.229
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.834 5.834
3 C 0.042 3.958
4 H 0.137 0.863
5 C -0.168 4.168
6 C -0.159 4.159
7 C -0.194 4.194
8 C 0.021 3.979
9 H 0.085 0.915
10 O -0.367 6.367
11 S 2.694 3.306
12 O -0.951 6.951
13 O -0.950 6.950
14 C -0.738 4.738
15 C -0.145 4.145
16 C -0.007 4.007
17 C -0.563 4.563
18 H 0.077 0.923
19 C -0.144 4.144
20 N -0.535 5.535
21 Si 0.722 3.278
22 H -0.196 1.196
23 H -0.209 1.209
24 H -0.210 1.210
25 H 0.077 0.923
26 H 0.092 0.908
27 H 0.088 0.912
28 H 0.095 0.905
29 H 0.097 0.903
30 H 0.088 0.912
31 H 0.091 0.909
32 H 0.088 0.912
33 H 0.095 0.905
34 H 0.227 0.773
35 H 0.151 0.849
36 H 0.143 0.857
37 H 0.082 0.918
38 H 0.083 0.917
39 H 0.040 0.960
40 H 0.038 0.962
41 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -8.361 17.900 -11.508 22.864
hybrid contribution 0.009 -0.212 1.455 1.471
sum -8.351 17.688 -10.052 21.992
Atomic orbital electron populations
1.21427 0.78836 1.02859 1.02235 1.57646 1.14863 1.21038 1.89894
1.21718 0.98139 0.82931 0.93014 0.86271 1.22796 1.02116 0.94120
0.97788 1.22269 1.02015 0.96674 0.94975 1.22863 1.02260 0.96805
0.97465 1.22947 0.91588 0.94054 0.89289 0.91461 1.86579 1.49041
1.72721 1.28320 1.05533 0.73704 0.72646 0.78695 1.93559 1.64787
1.62044 1.74724 1.93550 1.43942 1.82762 1.74713 1.30549 1.10535
1.09556 1.23138 1.21494 0.98144 0.90619 1.04209 1.19061 0.97363
0.96768 0.87549 1.21307 1.35993 1.06586 0.92387 0.92335 1.25023
0.95951 0.97543 0.95902 1.69973 1.46875 1.38921 0.97697 0.86502
0.79593 0.83514 0.78228 1.19599 1.20944 1.20976 0.92309 0.90770
0.91242 0.90482 0.90299 0.91203 0.90939 0.91230 0.90527 0.77254
0.84857 0.85744 0.91765 0.91656 0.96028 0.96185 0.93002
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.86 8.79 59.85 0.53 1.39 16
2 N -1.00 -12.12 3.11 -112.76 -0.35 -12.47 16
3 C 0.15 1.66 2.96 -66.20 -0.20 1.47 16
4 H 0.12 1.58 6.85 -51.93 -0.36 1.22 16
5 C -0.13 -1.12 6.43 -24.67 -0.16 -1.28 16
6 C -0.12 -0.86 6.83 -25.07 -0.17 -1.03 16
7 C -0.16 -1.08 6.60 -25.61 -0.17 -1.25 16
8 C 0.08 0.75 3.80 -25.61 -0.10 0.66 16
9 H 0.07 0.55 6.35 -51.93 -0.33 0.22 16
10 O -0.56 -5.98 13.22 -35.23 -0.47 -6.44 16
11 S 2.60 41.62 5.37 -107.50 -0.58 41.04 16
12 O -0.96 -17.59 17.09 -57.54 -0.98 -18.57 16
13 O -0.96 -17.93 16.58 -57.54 -0.95 -18.88 16
14 C -0.61 -10.18 6.18 37.16 0.23 -9.95 16
15 C -0.11 -2.24 5.16 -26.73 -0.14 -2.38 16
16 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16
17 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16
18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16
19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
20 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16
21 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16
22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16
26 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16
27 H 0.07 0.47 6.49 -51.93 -0.34 0.14 16
28 H 0.08 0.58 7.11 -51.93 -0.37 0.21 16
29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
33 H 0.08 0.51 7.95 -51.93 -0.41 0.10 16
34 H 0.38 2.48 9.11 45.56 0.41 2.90 16
35 H 0.13 2.16 8.14 -51.93 -0.42 1.73 16
36 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16
37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16
38 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16
39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16
41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
LS Contribution 343.02 15.07 5.17 5.17
Total: -1.00 -35.85 343.02 -9.15 -45.00
By element:
Atomic # 1 Polarization: 6.04 SS G_CDS: -5.98 Total: 0.06 kcal
Atomic # 6 Polarization: -24.84 SS G_CDS: -0.72 Total: -25.56 kcal
Atomic # 7 Polarization: -39.05 SS G_CDS: 0.39 Total: -38.67 kcal
Atomic # 8 Polarization: -41.49 SS G_CDS: -2.40 Total: -43.90 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal
Atomic # 16 Polarization: 41.62 SS G_CDS: -0.58 Total: 41.04 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -35.85 -9.15 -45.00 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000352596326.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.059 kcal
(2) G-P(sol) polarization free energy of solvation -35.846 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.905 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.058 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds