Wall clock time and date at job start Tue Mar 31 2020 02:59:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46503 * 119.99910 * 2 1
4 4 H 1.08996 * 110.53502 * 182.60792 * 3 2 1
5 5 C 1.55013 * 110.52070 * 305.27144 * 3 2 1
6 6 C 1.54894 * 102.75068 * 156.61580 * 5 3 2
7 7 C 1.54264 * 104.19615 * 322.04837 * 6 5 3
8 8 C 1.53876 * 106.60102 * 23.60756 * 7 6 5
9 9 H 1.09002 * 110.03428 * 240.71691 * 8 7 6
10 10 O 1.42905 * 110.03124 * 119.33472 * 8 7 6
11 11 S 1.65596 * 119.99759 * 179.97438 * 2 1 3
12 12 O 1.42106 * 104.27819 * 26.07704 * 11 2 1
13 13 O 1.42100 * 104.27298 * 153.92746 * 11 2 1
14 14 C 1.81395 * 104.45201 * 270.00105 * 11 2 1
15 15 C 1.53000 * 109.47129 * 180.02562 * 14 11 2
16 16 C 1.52997 * 109.46926 * 179.97438 * 15 14 11
17 17 C 1.50703 * 109.47010 * 180.02562 * 16 15 14
18 18 H 1.07996 * 119.99982 * 0.02562 * 17 16 15
19 19 C 1.37878 * 120.00211 * 180.02562 * 17 16 15
20 20 N 1.31519 * 119.99846 * 359.97438 * 19 17 16
21 21 Si 1.86797 * 120.00199 * 180.02562 * 19 17 16
22 22 H 1.48491 * 109.47170 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47066 * 119.99787 * 21 19 17
24 24 H 1.48505 * 109.47190 * 239.99863 * 21 19 17
25 25 H 1.08998 * 109.46934 * 89.99838 * 1 2 3
26 26 H 1.09000 * 109.47237 * 209.99957 * 1 2 3
27 27 H 1.09000 * 109.47072 * 330.00489 * 1 2 3
28 28 H 1.08997 * 110.76517 * 38.29726 * 5 3 2
29 29 H 1.08997 * 110.90480 * 274.99848 * 5 3 2
30 30 H 1.08995 * 110.48895 * 203.36605 * 6 5 3
31 31 H 1.09005 * 110.48599 * 80.72360 * 6 5 3
32 32 H 1.09002 * 110.03395 * 264.32063 * 7 6 5
33 33 H 1.09003 * 110.03429 * 142.89094 * 7 6 5
34 34 H 0.96700 * 113.99746 * 62.09490 * 10 8 7
35 35 H 1.08996 * 109.47151 * 300.00235 * 14 11 2
36 36 H 1.08998 * 109.47151 * 59.99963 * 14 11 2
37 37 H 1.08996 * 109.47284 * 300.00138 * 15 14 11
38 38 H 1.09007 * 109.47064 * 60.00025 * 15 14 11
39 39 H 1.09000 * 109.47829 * 300.00086 * 16 15 14
40 40 H 1.09005 * 109.47096 * 60.00748 * 16 15 14
41 41 H 0.96995 * 120.00058 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 1 3.2717 1.0901 -0.0464
5 6 1.7432 2.1585 -1.1853
6 6 2.1115 3.5838 -0.7036
7 6 1.7874 3.5690 0.8046
8 6 1.8417 2.0976 1.2515
9 1 0.8711 1.7892 1.6400
10 8 2.8463 1.9271 2.2534
11 16 2.2930 -1.4341 0.0006
12 8 1.3969 -2.3564 -0.6043
13 8 3.5394 -1.1194 -0.6048
14 6 2.5193 -1.8254 1.7574
15 6 3.2818 -3.1450 1.8918
16 6 3.4732 -3.4747 3.3735
17 6 4.2249 -4.7742 3.5060
18 1 4.5354 -5.3109 2.6218
19 6 4.5162 -5.2778 4.7560
20 7 4.1385 -4.6239 5.8328
21 14 5.4485 -6.8881 4.9202
22 1 5.7570 -7.4215 3.5691
23 1 6.7140 -6.6541 5.6612
24 1 4.6153 -7.8692 5.6608
25 1 -0.3633 0.0000 -1.0277
26 1 -0.3634 -0.8900 0.5138
27 1 -0.3633 0.8900 0.5138
28 1 0.6686 2.0704 -1.3449
29 1 2.2893 1.9047 -2.0938
30 1 1.5039 4.3289 -1.2170
31 1 3.1719 3.7787 -0.8640
32 1 0.7904 3.9748 0.9763
33 1 2.5279 4.1528 1.3514
34 1 2.6848 2.4320 3.0622
35 1 3.0865 -1.0279 2.2371
36 1 1.5451 -1.9178 2.2375
37 1 2.7150 -3.9428 1.4120
38 1 4.2561 -3.0522 1.4118
39 1 4.0404 -2.6769 3.8531
40 1 2.4992 -3.5675 3.8539
41 1 4.3431 -4.9784 6.7122
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000352596326.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:59:18
Heat of formation + Delta-G solvation = -167.821238 kcal
Electronic energy + Delta-G solvation = -22266.534615 eV
Core-core repulsion = 18885.712236 eV
Total energy + Delta-G solvation = -3380.822379 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 291.134 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.20401 -38.28550 -37.13957 -36.70189 -36.47195 -35.07359 -34.18208 -29.68493
-29.24479 -28.45330 -26.69366 -25.57910 -22.44339 -21.70041 -21.28798 -19.93758
-19.08910 -18.59833 -17.76742 -17.63945 -17.23371 -16.58444 -16.49939 -16.26060
-15.74535 -14.91621 -14.61066 -14.53559 -14.24318 -14.06234 -13.72182 -13.59582
-13.56904 -13.40485 -13.22866 -13.18085 -13.01717 -12.79022 -12.72572 -12.62843
-12.30632 -12.17687 -12.03741 -11.79344 -11.65364 -11.46571 -11.37449 -11.06390
-10.80700 -10.59540 -9.93990 -8.23916 -6.35401 -0.80899 1.39072 1.39344
1.53213 1.60181 2.38991 2.73603 3.07919 3.09380 3.24222 3.55634
3.61025 3.77481 3.89093 3.99807 4.06697 4.34187 4.35220 4.44547
4.49739 4.55247 4.61175 4.68979 4.74729 4.80846 4.91440 4.97621
5.02367 5.02913 5.14547 5.20842 5.33599 5.42488 5.42745 5.59006
5.62547 5.77228 6.17656 6.79779 6.93447 7.33935 8.87969
Molecular weight = 291.13amu
Principal moments of inertia in cm(-1)
A = 0.025168 B = 0.003814 C = 0.003528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1112.237875 B = 7339.509314 C = 7935.244068
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -0.990 5.990
3 C 0.134 3.866
4 H 0.091 0.909
5 C -0.127 4.127
6 C -0.119 4.119
7 C -0.148 4.148
8 C 0.080 3.920
9 H 0.082 0.918
10 O -0.588 6.588
11 S 2.620 3.380
12 O -0.983 6.983
13 O -0.989 6.989
14 C -0.606 4.606
15 C -0.105 4.105
16 C 0.033 3.967
17 C -0.553 4.553
18 H 0.060 0.940
19 C 0.003 3.997
20 N -0.929 5.929
21 Si 0.965 3.035
22 H -0.264 1.264
23 H -0.276 1.276
24 H -0.275 1.275
25 H 0.068 0.932
26 H 0.074 0.926
27 H 0.101 0.899
28 H 0.094 0.906
29 H 0.069 0.931
30 H 0.091 0.909
31 H 0.064 0.936
32 H 0.091 0.909
33 H 0.078 0.922
34 H 0.395 0.605
35 H 0.137 0.863
36 H 0.143 0.857
37 H 0.067 0.933
38 H 0.062 0.938
39 H 0.000 1.000
40 H 0.004 0.996
41 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.966 19.780 -10.847 24.662
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.828 5.828
3 C 0.028 3.972
4 H 0.109 0.891
5 C -0.166 4.166
6 C -0.157 4.157
7 C -0.186 4.186
8 C 0.020 3.980
9 H 0.100 0.900
10 O -0.397 6.397
11 S 2.717 3.283
12 O -0.973 6.973
13 O -0.980 6.980
14 C -0.737 4.737
15 C -0.144 4.144
16 C -0.005 4.005
17 C -0.591 4.591
18 H 0.078 0.922
19 C -0.196 4.196
20 N -0.569 5.569
21 Si 0.790 3.210
22 H -0.188 1.188
23 H -0.201 1.201
24 H -0.200 1.200
25 H 0.087 0.913
26 H 0.093 0.907
27 H 0.120 0.880
28 H 0.113 0.887
29 H 0.088 0.912
30 H 0.109 0.891
31 H 0.083 0.917
32 H 0.110 0.890
33 H 0.097 0.903
34 H 0.246 0.754
35 H 0.155 0.845
36 H 0.161 0.839
37 H 0.085 0.915
38 H 0.080 0.920
39 H 0.019 0.981
40 H 0.022 0.978
41 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -9.475 18.907 -11.912 24.272
hybrid contribution 0.320 -0.448 1.589 1.682
sum -9.155 18.458 -10.323 23.045
Atomic orbital electron populations
1.21768 0.76679 1.04543 1.03520 1.57314 1.16051 1.19895 1.89535
1.21958 0.96731 0.82845 0.95690 0.89090 1.22821 1.03006 0.94439
0.96321 1.22283 1.02029 0.96008 0.95351 1.22824 1.03669 0.95102
0.97043 1.23028 0.91629 0.95150 0.88185 0.90015 1.86539 1.50028
1.73573 1.29547 1.04569 0.73002 0.73132 0.77610 1.93523 1.65167
1.63720 1.74902 1.93507 1.45894 1.83466 1.75102 1.30510 1.10896
1.07160 1.25097 1.21312 0.98967 0.93301 1.00853 1.18943 0.95750
0.95378 0.90464 1.21756 1.36690 1.07821 0.92838 0.92205 1.25958
0.96763 1.01367 0.95476 1.70083 1.47819 1.40733 0.98307 0.85393
0.78275 0.78835 0.78539 1.18814 1.20132 1.20028 0.91300 0.90710
0.88015 0.88717 0.91201 0.89090 0.91719 0.88993 0.90283 0.75419
0.84468 0.83885 0.91458 0.91956 0.98145 0.97795 0.92578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.28 8.79 127.77 1.12 2.40 16
2 N -0.99 -22.79 3.11 -510.68 -1.59 -24.37 16
3 C 0.13 2.86 2.96 46.11 0.14 2.99 16
4 H 0.09 2.46 6.85 -2.39 -0.02 2.45 16
5 C -0.13 -1.96 6.43 31.93 0.21 -1.76 16
6 C -0.12 -1.39 6.83 31.67 0.22 -1.18 16
7 C -0.15 -1.63 6.60 31.32 0.21 -1.42 16
8 C 0.08 1.32 3.80 31.32 0.12 1.43 16
9 H 0.08 1.09 6.35 -2.39 -0.02 1.07 16
10 O -0.59 -12.02 13.22 -148.98 -1.97 -13.99 16
11 S 2.62 83.87 5.37 -56.49 -0.30 83.57 16
12 O -0.98 -35.62 17.09 -127.65 -2.18 -37.81 16
13 O -0.99 -37.73 16.58 -127.65 -2.12 -39.84 16
14 C -0.61 -20.52 6.18 71.98 0.44 -20.07 16
15 C -0.11 -4.59 5.16 30.59 0.16 -4.43 16
16 C 0.03 1.77 4.97 29.85 0.15 1.92 16
17 C -0.55 -32.41 9.11 25.60 0.23 -32.18 16
18 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16
19 C 0.00 0.15 5.46 84.65 0.46 0.61 16
20 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16
21 Si 0.97 44.96 29.54 68.60 2.03 46.98 16
22 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16
23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16
24 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16
25 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16
26 H 0.07 1.23 7.79 -2.39 -0.02 1.21 16
27 H 0.10 1.00 6.49 -2.39 -0.02 0.99 16
28 H 0.09 1.13 7.11 -2.39 -0.02 1.11 16
29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16
31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16
32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16
33 H 0.08 0.86 7.95 -2.39 -0.02 0.84 16
34 H 0.40 4.72 9.11 -74.06 -0.67 4.05 16
35 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16
36 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16
37 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16
38 H 0.06 2.70 8.14 -2.38 -0.02 2.68 16
39 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
40 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16
41 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16
Total: -1.00 -77.88 343.02 -2.05 -79.93
By element:
Atomic # 1 Polarization: 13.21 SS G_CDS: 0.34 Total: 13.55 kcal
Atomic # 6 Polarization: -55.12 SS G_CDS: 3.45 Total: -51.67 kcal
Atomic # 7 Polarization: -79.42 SS G_CDS: -1.30 Total: -80.72 kcal
Atomic # 8 Polarization: -85.37 SS G_CDS: -6.27 Total: -91.64 kcal
Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal
Atomic # 16 Polarization: 83.87 SS G_CDS: -0.30 Total: 83.57 kcal
Total: -77.88 -2.05 -79.93 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000352596326.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.890 kcal
(2) G-P(sol) polarization free energy of solvation -77.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.931 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds