Wall clock time and date at job start Tue Mar 31 2020 02:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.58072 * 2 1 4 4 C 1.53192 * 109.58989 * 239.57176 * 2 1 3 5 5 H 1.08997 * 109.49678 * 305.56370 * 4 2 1 6 6 C 1.53003 * 109.49473 * 65.62397 * 4 2 1 7 7 O 1.42900 * 109.46573 * 185.00238 * 6 4 2 8 8 C 1.53037 * 109.31486 * 185.57689 * 4 2 1 9 9 C 1.53043 * 109.53863 * 61.36349 * 8 4 2 10 10 C 1.53625 * 109.24322 * 298.51317 * 9 8 4 11 11 N 1.46922 * 108.54235 * 54.85072 * 10 9 8 12 12 S 1.65606 * 120.62923 * 126.37114 * 11 10 9 13 13 O 1.42106 * 104.27520 * 346.12805 * 12 11 10 14 14 O 1.42096 * 104.27970 * 218.26891 * 12 11 10 15 15 C 1.81396 * 104.45086 * 102.19822 * 12 11 10 16 16 C 1.53002 * 109.47321 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47208 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99923 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99882 * 179.71752 * 17 16 15 20 20 N 1.31519 * 120.00217 * 0.28078 * 19 17 16 21 21 Si 1.86800 * 120.00094 * 180.27504 * 19 17 16 22 22 H 1.48495 * 109.47052 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46876 * 120.00223 * 21 19 17 24 24 H 1.48496 * 109.47370 * 240.00012 * 21 19 17 25 25 H 1.08998 * 109.46953 * 290.67973 * 1 2 3 26 26 H 1.09000 * 109.46945 * 50.68329 * 1 2 3 27 27 H 1.09002 * 109.46939 * 170.68260 * 1 2 3 28 28 H 1.08994 * 109.47115 * 305.00155 * 6 4 2 29 29 H 1.08996 * 109.47059 * 65.00744 * 6 4 2 30 30 H 0.96704 * 113.99934 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46061 * 181.38981 * 8 4 2 32 32 H 1.09002 * 109.46027 * 301.35769 * 8 4 2 33 33 H 1.08994 * 109.49746 * 58.58550 * 9 8 4 34 34 H 1.09001 * 109.49835 * 178.65147 * 9 8 4 35 35 H 1.09004 * 109.73670 * 295.12224 * 10 9 8 36 36 H 1.08996 * 109.66639 * 174.54871 * 10 9 8 37 37 H 1.08994 * 109.47379 * 59.99770 * 15 12 11 38 38 H 1.09008 * 109.47083 * 299.99830 * 15 12 11 39 39 H 1.08994 * 109.47630 * 59.99252 * 16 15 12 40 40 H 1.09008 * 109.46355 * 299.99604 * 16 15 12 41 41 H 0.96999 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2445 5 1 1.6026 -1.7267 -1.2894 6 6 1.6540 0.0571 -2.4967 7 8 2.0303 -0.6817 -3.6606 8 6 3.5675 -0.8494 -1.1690 9 6 3.9570 -1.6655 0.0657 10 6 3.4657 -0.9402 1.3277 11 7 2.0226 -0.6979 1.1954 12 16 0.9719 -1.1960 2.3745 13 8 1.7387 -2.0860 3.1740 14 8 -0.1680 -1.6515 1.6586 15 6 0.5807 0.3144 3.2997 16 6 -0.3938 -0.0186 4.4313 17 6 -0.7183 1.2362 5.2003 18 1 -0.2743 2.1771 4.9106 19 6 -1.5870 1.1840 6.2697 20 7 -2.1282 0.0383 6.6221 21 14 -1.9952 2.7407 7.2182 22 1 -1.2620 3.8880 6.6257 23 1 -3.4562 2.9963 7.1446 24 1 -1.5926 2.5752 8.6379 25 1 -0.3633 0.3629 0.9614 26 1 -0.3633 0.6511 -0.7951 27 1 -0.3633 -1.0141 -0.1664 28 1 0.5764 0.2203 -2.5026 29 1 2.1672 1.0187 -2.4951 30 1 1.8134 -0.2408 -4.4935 31 1 3.9379 -1.3473 -2.0651 32 1 4.0061 0.1460 -1.0992 33 1 3.4984 -2.6527 0.0087 34 1 5.0412 -1.7698 0.1057 35 1 3.9877 0.0109 1.4323 36 1 3.6532 -1.5608 2.2039 37 1 0.1246 1.0431 2.6297 38 1 1.4964 0.7305 3.7200 39 1 0.0625 -0.7472 5.1013 40 1 -1.3096 -0.4349 4.0113 41 1 -2.7396 0.0017 7.3742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416628146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:31 Heat of formation + Delta-G solvation = -130.454061 kcal Electronic energy + Delta-G solvation = -22739.724775 eV Core-core repulsion = 19360.522758 eV Total energy + Delta-G solvation = -3379.202016 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.37839 -36.84117 -36.69156 -35.41205 -33.92239 -32.91817 -32.61686 -31.16381 -27.71954 -25.87111 -25.61155 -23.39756 -21.65410 -21.45079 -20.30934 -18.49378 -17.64360 -17.12574 -16.45264 -16.09151 -15.46886 -15.34116 -14.86792 -14.58489 -14.50833 -14.21386 -13.81843 -13.41744 -13.31071 -12.85704 -12.56201 -12.52036 -12.35717 -11.86395 -11.75419 -11.62267 -11.42268 -11.22839 -11.09138 -10.99813 -10.94459 -10.73443 -10.58295 -10.39740 -10.33251 -10.09735 -10.04123 -9.75498 -9.29167 -8.73260 -8.51544 -6.13374 -4.18972 0.77051 3.00671 3.24401 3.31710 3.35081 3.99173 4.28447 4.37437 4.46247 4.62032 4.70555 4.81397 4.93349 5.04544 5.17915 5.21776 5.25544 5.29036 5.30888 5.51383 5.52328 5.63215 5.66265 5.72421 5.78299 5.86136 5.96385 6.02869 6.12885 6.23397 6.31881 6.46901 6.61204 6.74893 7.29502 7.35177 7.40135 7.79823 8.16753 8.84695 9.45923 10.97679 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.004157 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.933253 B = 6734.766881 C = 7112.003685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.162 3.838 3 H 0.073 0.927 4 C -0.095 4.095 5 H 0.085 0.915 6 C 0.080 3.920 7 O -0.572 6.572 8 C -0.108 4.108 9 C -0.132 4.132 10 C 0.114 3.886 11 N -1.002 6.002 12 S 2.590 3.410 13 O -0.967 6.967 14 O -0.960 6.960 15 C -0.592 4.592 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.377 0.623 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.514 1.706 -17.825 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.056 3.944 3 H 0.091 0.909 4 C -0.116 4.116 5 H 0.104 0.896 6 C 0.001 3.999 7 O -0.377 6.377 8 C -0.145 4.145 9 C -0.171 4.171 10 C -0.011 4.011 11 N -0.838 5.838 12 S 2.690 3.310 13 O -0.958 6.958 14 O -0.950 6.950 15 C -0.725 4.725 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.224 0.776 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.331 0.276 -17.121 19.998 hybrid contribution -0.377 1.997 0.265 2.050 sum 9.954 2.274 -16.855 19.706 Atomic orbital electron populations 1.22825 0.92880 1.05996 1.03089 1.20812 0.94463 0.95112 0.84053 0.90854 1.21517 0.96968 1.00811 0.92259 0.89624 1.22236 0.98653 0.93731 0.85231 1.86475 1.85580 1.49573 1.16116 1.21472 0.94627 1.00304 0.98121 1.21950 1.00796 0.99664 0.94665 1.21548 0.79747 1.00429 0.99382 1.57989 1.17930 1.74732 1.33184 1.05729 0.73571 0.77922 0.73802 1.93501 1.70313 1.62063 1.69922 1.93587 1.51194 1.80367 1.69885 1.30572 1.10572 1.18534 1.12828 1.18962 0.92477 0.99131 0.90495 1.21041 1.27375 0.93748 1.13738 0.92017 1.25070 0.95734 0.96506 0.97177 1.69967 1.30388 1.24697 1.27779 0.86419 0.78242 0.82912 0.79750 1.19651 1.20785 1.20774 0.91674 0.91356 0.87801 0.92917 0.93602 0.77623 0.91161 0.92123 0.91433 0.90920 0.91641 0.88290 0.86234 0.86287 0.94919 0.94845 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 7.13 37.16 0.26 -2.23 16 2 C 0.16 1.94 2.97 -67.60 -0.20 1.74 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.10 -1.06 2.04 -90.50 -0.18 -1.24 16 5 H 0.09 1.12 8.12 -51.93 -0.42 0.69 16 6 C 0.08 0.71 6.31 37.16 0.23 0.94 16 7 O -0.57 -5.21 13.18 -35.23 -0.46 -5.68 16 8 C -0.11 -1.08 5.08 -26.69 -0.14 -1.22 16 9 C -0.13 -1.40 6.10 -26.38 -0.16 -1.56 16 10 C 0.11 1.38 6.51 -3.49 -0.02 1.36 16 11 N -1.00 -14.06 3.20 -106.23 -0.34 -14.40 16 12 S 2.59 47.43 4.84 -107.50 -0.52 46.91 16 13 O -0.97 -20.36 16.31 -57.54 -0.94 -21.30 16 14 O -0.96 -19.32 13.62 -57.54 -0.78 -20.11 16 15 C -0.59 -11.47 5.84 37.16 0.22 -11.25 16 16 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.06 0.94 4.73 -51.93 -0.25 0.70 16 26 H 0.07 0.69 6.98 -51.93 -0.36 0.33 16 27 H 0.10 1.57 6.36 -51.93 -0.33 1.24 16 28 H 0.05 0.43 6.61 -51.93 -0.34 0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.38 1.69 9.12 45.56 0.42 2.10 16 31 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.30 6.60 -51.93 -0.34 0.96 16 37 H 0.12 2.07 6.57 -51.93 -0.34 1.73 16 38 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -34.57 329.01 -8.63 -43.20 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.72 Total: 2.06 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -0.54 Total: -26.03 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.40 Total: -40.14 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.19 Total: -47.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 47.43 SS G_CDS: -0.52 Total: 46.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.57 -8.63 -43.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416628146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.254 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds