Wall clock time and date at job start Tue Mar 31 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.58072 * 2 1 4 4 C 1.53192 * 109.58989 * 239.57176 * 2 1 3 5 5 H 1.08997 * 109.49678 * 305.56370 * 4 2 1 6 6 C 1.53003 * 109.49473 * 65.62397 * 4 2 1 7 7 O 1.42900 * 109.46573 * 185.00238 * 6 4 2 8 8 C 1.53037 * 109.31486 * 185.57689 * 4 2 1 9 9 C 1.53043 * 109.53863 * 61.36349 * 8 4 2 10 10 C 1.53625 * 109.24322 * 298.51317 * 9 8 4 11 11 N 1.46922 * 108.54235 * 54.85072 * 10 9 8 12 12 S 1.65606 * 120.62923 * 126.37114 * 11 10 9 13 13 O 1.42106 * 104.27520 * 346.12805 * 12 11 10 14 14 O 1.42096 * 104.27970 * 218.26891 * 12 11 10 15 15 C 1.81396 * 104.45086 * 102.19822 * 12 11 10 16 16 C 1.53002 * 109.47321 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47208 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99923 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99882 * 179.71752 * 17 16 15 20 20 N 1.31519 * 120.00217 * 0.28078 * 19 17 16 21 21 Si 1.86800 * 120.00094 * 180.27504 * 19 17 16 22 22 H 1.48495 * 109.47052 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46876 * 120.00223 * 21 19 17 24 24 H 1.48496 * 109.47370 * 240.00012 * 21 19 17 25 25 H 1.08998 * 109.46953 * 290.67973 * 1 2 3 26 26 H 1.09000 * 109.46945 * 50.68329 * 1 2 3 27 27 H 1.09002 * 109.46939 * 170.68260 * 1 2 3 28 28 H 1.08994 * 109.47115 * 305.00155 * 6 4 2 29 29 H 1.08996 * 109.47059 * 65.00744 * 6 4 2 30 30 H 0.96704 * 113.99934 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46061 * 181.38981 * 8 4 2 32 32 H 1.09002 * 109.46027 * 301.35769 * 8 4 2 33 33 H 1.08994 * 109.49746 * 58.58550 * 9 8 4 34 34 H 1.09001 * 109.49835 * 178.65147 * 9 8 4 35 35 H 1.09004 * 109.73670 * 295.12224 * 10 9 8 36 36 H 1.08996 * 109.66639 * 174.54871 * 10 9 8 37 37 H 1.08994 * 109.47379 * 59.99770 * 15 12 11 38 38 H 1.09008 * 109.47083 * 299.99830 * 15 12 11 39 39 H 1.08994 * 109.47630 * 59.99252 * 16 15 12 40 40 H 1.09008 * 109.46355 * 299.99604 * 16 15 12 41 41 H 0.96999 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2445 5 1 1.6026 -1.7267 -1.2894 6 6 1.6540 0.0571 -2.4967 7 8 2.0303 -0.6817 -3.6606 8 6 3.5675 -0.8494 -1.1690 9 6 3.9570 -1.6655 0.0657 10 6 3.4657 -0.9402 1.3277 11 7 2.0226 -0.6979 1.1954 12 16 0.9719 -1.1960 2.3745 13 8 1.7387 -2.0860 3.1740 14 8 -0.1680 -1.6515 1.6586 15 6 0.5807 0.3144 3.2997 16 6 -0.3938 -0.0186 4.4313 17 6 -0.7183 1.2362 5.2003 18 1 -0.2743 2.1771 4.9106 19 6 -1.5870 1.1840 6.2697 20 7 -2.1282 0.0383 6.6221 21 14 -1.9952 2.7407 7.2182 22 1 -1.2620 3.8880 6.6257 23 1 -3.4562 2.9963 7.1446 24 1 -1.5926 2.5752 8.6379 25 1 -0.3633 0.3629 0.9614 26 1 -0.3633 0.6511 -0.7951 27 1 -0.3633 -1.0141 -0.1664 28 1 0.5764 0.2203 -2.5026 29 1 2.1672 1.0187 -2.4951 30 1 1.8134 -0.2408 -4.4935 31 1 3.9379 -1.3473 -2.0651 32 1 4.0061 0.1460 -1.0992 33 1 3.4984 -2.6527 0.0087 34 1 5.0412 -1.7698 0.1057 35 1 3.9877 0.0109 1.4323 36 1 3.6532 -1.5608 2.2039 37 1 0.1246 1.0431 2.6297 38 1 1.4964 0.7305 3.7200 39 1 0.0625 -0.7472 5.1013 40 1 -1.3096 -0.4349 4.0113 41 1 -2.7396 0.0017 7.3742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416628146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:30 Heat of formation + Delta-G solvation = -157.601303 kcal Electronic energy + Delta-G solvation = -22740.901967 eV Core-core repulsion = 19360.522758 eV Total energy + Delta-G solvation = -3380.379209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28686 -38.36843 -37.42964 -36.96835 -35.92217 -33.90415 -33.55141 -33.10902 -28.67003 -27.62107 -26.66588 -24.52577 -23.27090 -22.52913 -21.21846 -19.86496 -18.91027 -18.32073 -18.00024 -17.35566 -17.05403 -16.53840 -16.27256 -15.86829 -15.33840 -15.24544 -15.13280 -14.84287 -14.40894 -14.19632 -13.95291 -13.73143 -13.43866 -13.38833 -13.23179 -12.98424 -12.91935 -12.78694 -12.55740 -12.29703 -12.21352 -12.06738 -11.85667 -11.73357 -11.69104 -11.35070 -11.20280 -11.08578 -10.70856 -10.66629 -9.87143 -8.26985 -6.41473 -0.70985 1.40621 1.41353 1.54760 1.72714 2.37487 2.84737 3.06401 3.16152 3.42528 3.48676 3.77253 3.94283 4.02163 4.09605 4.12937 4.22629 4.33125 4.40814 4.51692 4.58006 4.67671 4.71348 4.78866 4.81969 4.87647 4.97772 5.02127 5.16056 5.24293 5.25611 5.29923 5.34493 5.47623 5.54269 5.67456 5.73196 6.04769 6.72359 6.99619 7.29030 8.85568 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.004157 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.933253 B = 6734.766881 C = 7112.003685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.159 3.841 3 H 0.109 0.891 4 C -0.097 4.097 5 H 0.055 0.945 6 C 0.082 3.918 7 O -0.592 6.592 8 C -0.102 4.102 9 C -0.131 4.131 10 C 0.105 3.895 11 N -0.994 5.994 12 S 2.607 3.393 13 O -1.001 7.001 14 O -0.985 6.985 15 C -0.589 4.589 16 C 0.022 3.978 17 C -0.538 4.538 18 H 0.076 0.924 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.975 3.025 22 H -0.255 1.255 23 H -0.277 1.277 24 H -0.278 1.278 25 H 0.048 0.952 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.397 0.603 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.003 0.997 40 H 0.006 0.994 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.079 4.614 -19.366 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.054 3.946 3 H 0.127 0.873 4 C -0.118 4.118 5 H 0.073 0.927 6 C 0.004 3.996 7 O -0.401 6.401 8 C -0.140 4.140 9 C -0.170 4.170 10 C -0.019 4.019 11 N -0.833 5.833 12 S 2.706 3.294 13 O -0.991 6.991 14 O -0.975 6.975 15 C -0.720 4.720 16 C -0.017 4.017 17 C -0.577 4.577 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.799 3.201 22 H -0.178 1.178 23 H -0.203 1.203 24 H -0.204 1.204 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.247 0.753 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.895 3.195 -18.676 22.372 hybrid contribution -0.831 1.030 0.638 1.469 sum 11.064 4.225 -18.038 21.579 Atomic orbital electron populations 1.22824 0.94086 1.05042 1.03333 1.21101 0.93611 0.96677 0.83260 0.87299 1.21500 0.97644 0.99554 0.93078 0.92677 1.22196 0.99239 0.93986 0.84148 1.86421 1.85776 1.50607 1.17249 1.21451 0.93759 1.01290 0.97478 1.21972 1.02135 0.98532 0.94344 1.21842 0.78396 1.02109 0.99565 1.57661 1.18307 1.74890 1.32456 1.04917 0.73357 0.77252 0.73835 1.93450 1.71024 1.63226 1.71404 1.93574 1.52884 1.80837 1.70189 1.30466 1.09957 1.20159 1.11457 1.18806 0.92777 0.98051 0.92036 1.21538 1.27338 0.94780 1.14029 0.90557 1.26137 0.95561 1.00140 0.98419 1.70115 1.31316 1.27409 1.28625 0.85245 0.78158 0.78715 0.78016 1.17801 1.20304 1.20382 0.93355 0.88036 0.90524 0.92480 0.91135 0.75316 0.91252 0.89869 0.93586 0.88406 0.88319 0.89900 0.83931 0.84303 0.97914 0.97554 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.90 7.13 71.98 0.51 -4.39 16 2 C 0.16 3.42 2.97 44.97 0.13 3.55 16 3 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.10 -1.95 2.04 -10.72 -0.02 -1.97 16 5 H 0.05 1.43 8.12 -2.39 -0.02 1.41 16 6 C 0.08 1.20 6.31 71.98 0.45 1.66 16 7 O -0.59 -9.30 13.18 -148.98 -1.96 -11.26 16 8 C -0.10 -1.75 5.08 30.62 0.16 -1.60 16 9 C -0.13 -2.52 6.10 30.82 0.19 -2.33 16 10 C 0.11 2.33 6.51 86.51 0.56 2.90 16 11 N -0.99 -26.65 3.20 -490.01 -1.57 -28.22 16 12 S 2.61 97.53 4.84 -56.49 -0.27 97.26 16 13 O -1.00 -43.67 16.31 -127.65 -2.08 -45.75 16 14 O -0.98 -41.35 13.62 -127.65 -1.74 -43.09 16 15 C -0.59 -22.76 5.84 71.98 0.42 -22.34 16 16 C 0.02 1.18 4.98 29.85 0.15 1.33 16 17 C -0.54 -29.95 9.11 25.60 0.23 -29.71 16 18 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 19 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 20 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 21 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 22 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 25 H 0.05 1.37 4.73 -2.39 -0.01 1.35 16 26 H 0.10 1.81 6.98 -2.39 -0.02 1.80 16 27 H 0.08 2.36 6.36 -2.39 -0.02 2.35 16 28 H 0.06 0.77 6.61 -2.39 -0.02 0.75 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.40 2.46 9.12 -74.05 -0.68 1.79 16 31 H 0.07 1.23 7.79 -2.39 -0.02 1.22 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.08 2.13 6.60 -2.39 -0.02 2.11 16 37 H 0.14 4.78 6.57 -2.39 -0.02 4.77 16 38 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 39 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -77.69 329.01 -1.72 -79.40 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.35 Total: 16.07 kcal Atomic # 6 Polarization: -55.94 SS G_CDS: 3.25 Total: -52.69 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -1.28 Total: -85.17 kcal Atomic # 8 Polarization: -94.32 SS G_CDS: -5.78 Total: -100.10 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 97.53 SS G_CDS: -0.27 Total: 97.26 kcal Total: -77.69 -1.72 -79.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416628146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.199 kcal (2) G-P(sol) polarization free energy of solvation -77.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds