Wall clock time and date at job start Tue Mar 31 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00331 * 2 1 4 4 C 1.53004 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47235 * 305.00312 * 4 3 2 6 6 C 1.52997 * 109.46760 * 65.00517 * 4 3 2 7 7 C 1.53006 * 109.47081 * 185.00474 * 4 3 2 8 8 N 1.46490 * 109.47115 * 175.00339 * 7 4 3 9 9 S 1.65601 * 120.00173 * 165.00089 * 8 7 4 10 10 O 1.42107 * 104.27291 * 308.92374 * 9 8 7 11 11 O 1.42096 * 104.27630 * 181.07099 * 9 8 7 12 12 C 1.81393 * 104.44983 * 64.99627 * 9 8 7 13 13 C 1.53002 * 109.47058 * 173.81620 * 12 9 8 14 14 C 1.50693 * 115.55104 * 65.19449 * 13 12 9 15 15 H 1.08004 * 120.00010 * 264.78345 * 14 13 12 16 16 C 1.37876 * 120.00214 * 84.78707 * 14 13 12 17 17 N 1.31516 * 120.00020 * 352.22829 * 16 14 13 18 18 Si 1.86799 * 120.00138 * 172.22983 * 16 14 13 19 19 H 1.48503 * 109.46741 * 90.00000 * 18 16 14 20 20 H 1.48499 * 109.47144 * 209.99508 * 18 16 14 21 21 H 1.48499 * 109.47353 * 330.00006 * 18 16 14 22 22 C 1.53007 * 117.49436 * 279.52085 * 13 12 9 23 23 C 1.53000 * 117.49730 * 210.86641 * 13 12 9 24 24 H 1.09002 * 109.47355 * 59.99257 * 1 2 3 25 25 H 1.08988 * 109.47752 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46881 * 299.99645 * 1 2 3 27 27 H 1.09001 * 109.46737 * 60.00732 * 3 2 1 28 28 H 1.08993 * 109.47518 * 300.00524 * 3 2 1 29 29 H 1.08999 * 109.47414 * 59.99905 * 6 4 3 30 30 H 1.09004 * 109.46809 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.47140 * 299.99467 * 6 4 3 32 32 H 1.08997 * 109.47140 * 55.00009 * 7 4 3 33 33 H 1.09003 * 109.46787 * 295.00430 * 7 4 3 34 34 H 0.97005 * 120.00085 * 344.99672 * 8 7 4 35 35 H 1.08997 * 109.47236 * 293.81609 * 12 9 8 36 36 H 1.08996 * 109.47383 * 53.81386 * 12 9 8 37 37 H 0.97000 * 120.00178 * 185.02788 * 17 16 14 38 38 H 1.08997 * 117.50283 * 0.02562 * 22 13 12 39 39 H 1.09001 * 117.48963 * 145.02035 * 22 13 12 40 40 H 1.08997 * 117.49994 * 214.97965 * 23 13 12 41 41 H 1.09005 * 117.50051 * 359.97400 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8515 0.5680 0.8409 6 6 3.9951 0.5368 -1.3084 7 6 4.1575 2.5767 0.1252 8 7 5.6123 2.4526 0.2446 9 16 6.5775 3.7800 0.0237 10 8 6.1475 4.3234 -1.2170 11 8 7.8988 3.2837 0.1874 12 6 6.1405 4.8899 1.3903 13 6 7.0798 6.0976 1.3868 14 6 6.9681 7.0044 0.1884 15 1 7.6357 6.8751 -0.6507 16 6 6.0139 7.9993 0.1632 17 7 5.1043 8.0621 1.1110 18 14 6.0129 9.2578 -1.2172 19 1 5.1706 8.7644 -2.3362 20 1 5.4650 10.5433 -0.7146 21 1 7.4024 9.4662 -1.6980 22 6 8.4659 5.9162 2.0089 23 6 7.4032 6.7449 2.7349 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.6792 1.1534 -2.1499 30 1 5.0817 0.4503 -1.3086 31 1 3.5520 -0.4550 -1.3980 32 1 3.7613 3.0730 1.0111 33 1 3.9144 3.1646 -0.7599 34 1 6.0103 1.5929 0.4531 35 1 5.1119 5.2293 1.2681 36 1 6.2372 4.3571 2.3362 37 1 4.3899 8.7159 1.0551 38 1 8.7087 4.9365 2.4202 39 1 9.2969 6.4532 1.5514 40 1 7.5355 7.8267 2.7549 41 1 6.9464 6.3107 3.6242 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451114992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:08 Heat of formation + Delta-G solvation = -107.968211 kcal Electronic energy + Delta-G solvation = -22166.566366 eV Core-core repulsion = 18788.339409 eV Total energy + Delta-G solvation = -3378.226957 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.52067 -36.75882 -36.44401 -36.08930 -35.04620 -32.27925 -32.04722 -28.16819 -27.47546 -26.47468 -25.46185 -24.61362 -21.21487 -20.64420 -19.67311 -18.62801 -16.95897 -16.88015 -16.36580 -16.14207 -15.53655 -15.22225 -15.05539 -14.71184 -14.58268 -14.19798 -13.72178 -13.32446 -13.13144 -12.69896 -12.54548 -11.95201 -11.83941 -11.77266 -11.64665 -11.32405 -11.21889 -11.12856 -11.01857 -10.94397 -10.82500 -10.78983 -10.57673 -10.45314 -10.11940 -9.85068 -9.73359 -9.18668 -8.95683 -8.56752 -8.09286 -6.14776 -4.25005 1.08723 3.30272 3.35026 3.35958 3.41186 3.68681 4.36800 4.54192 4.73523 4.75422 4.88001 5.03924 5.11689 5.13093 5.15517 5.21402 5.30633 5.40844 5.42397 5.52636 5.53353 5.71254 5.81494 5.89991 5.96749 6.05510 6.21572 6.27131 6.30336 6.37363 6.60999 6.72334 6.94864 6.98220 7.22342 7.30107 7.38918 7.79864 8.20203 8.80512 9.46109 10.92933 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.004609 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.106245 B = 6073.940617 C = 6706.168539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.064 3.936 4 C -0.095 4.095 5 H 0.085 0.915 6 C -0.145 4.145 7 C 0.122 3.878 8 N -1.131 6.131 9 S 2.608 3.392 10 O -0.950 6.950 11 O -0.974 6.974 12 C -0.554 4.554 13 C 0.043 3.957 14 C -0.515 4.515 15 H 0.068 0.932 16 C 0.082 3.918 17 N -0.875 5.875 18 Si 0.891 3.109 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.270 1.270 22 C -0.208 4.208 23 C -0.141 4.141 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.409 0.591 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 -13.064 0.955 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.013 4.013 4 C -0.115 4.115 5 H 0.103 0.897 6 C -0.202 4.202 7 C -0.005 4.005 8 N -0.888 5.888 9 S 2.705 3.295 10 O -0.940 6.940 11 O -0.965 6.965 12 C -0.688 4.688 13 C 0.041 3.959 14 C -0.553 4.553 15 H 0.086 0.914 16 C -0.123 4.123 17 N -0.511 5.511 18 Si 0.718 3.282 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.245 4.245 23 C -0.181 4.181 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.242 0.758 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.160 -12.813 0.267 14.680 hybrid contribution -0.729 0.715 0.133 1.030 sum -7.889 -12.098 0.401 14.448 Atomic orbital electron populations 1.22729 0.81121 1.02576 1.00082 1.87848 1.19552 1.28044 1.95459 1.22549 0.93291 0.84631 1.00848 1.21276 0.93119 0.96669 1.00389 0.89701 1.21789 1.01448 1.00827 0.96186 1.21176 0.80055 0.96923 1.02383 1.55938 1.16190 1.26629 1.90028 1.05107 0.73277 0.73686 0.77427 1.93534 1.81847 1.78533 1.40051 1.93505 1.36145 1.78931 1.87913 1.29982 1.11723 1.11602 1.15455 1.18280 0.89690 0.92693 0.95277 1.20528 1.19058 1.14330 1.01341 0.91352 1.24946 0.94865 0.96932 0.95525 1.69978 1.12902 1.35631 1.32581 0.86582 0.78926 0.80489 0.82194 1.20049 1.21087 1.19411 1.23198 0.94107 1.00463 1.06775 1.22552 1.01862 0.98522 0.95132 0.94046 0.89783 0.94059 0.92780 0.92668 0.92412 0.92253 0.92013 0.91664 0.89859 0.75796 0.84901 0.88245 0.92759 0.90663 0.89528 0.89598 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.21 10.24 -35.23 -0.36 -4.57 16 3 C 0.06 0.65 5.32 37.16 0.20 0.85 16 4 C -0.09 -1.04 2.65 -90.62 -0.24 -1.28 16 5 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.15 -1.63 8.97 37.16 0.33 -1.29 16 7 C 0.12 1.57 5.52 -4.04 -0.02 1.55 16 8 N -1.13 -16.48 5.41 -10.62 -0.06 -16.54 16 9 S 2.61 51.99 5.19 -107.50 -0.56 51.43 16 10 O -0.95 -22.39 17.17 -57.54 -0.99 -23.37 16 11 O -0.97 -21.29 18.08 -57.54 -1.04 -22.33 16 12 C -0.55 -11.45 5.93 37.16 0.22 -11.23 16 13 C 0.04 1.04 1.32 -155.66 -0.21 0.83 16 14 C -0.52 -14.04 8.18 -34.44 -0.28 -14.32 16 15 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 16 C 0.08 2.23 5.38 -17.82 -0.10 2.13 16 17 N -0.88 -23.82 12.98 55.43 0.72 -23.10 16 18 Si 0.89 21.25 29.55 -169.99 -5.02 16.23 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 23 C -0.14 -3.21 9.49 -26.69 -0.25 -3.46 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.53 8.14 -51.94 -0.42 0.11 16 26 H 0.04 0.29 8.14 -51.92 -0.42 -0.14 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.67 7.54 -51.93 -0.39 0.28 16 31 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.17 7.69 -51.93 -0.40 0.77 16 34 H 0.41 5.04 8.33 -34.47 -0.29 4.75 16 35 H 0.13 2.82 8.14 -51.93 -0.42 2.40 16 36 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 37 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 40 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -32.68 355.14 -8.40 -41.08 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.95 Total: 5.52 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 0.50 Total: -29.70 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.66 Total: -39.64 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -2.39 Total: -50.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 51.99 SS G_CDS: -0.56 Total: 51.43 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.68 -8.40 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451114992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.887 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds