Wall clock time and date at job start Tue Mar 31 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00331 * 2 1 4 4 C 1.53004 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47235 * 305.00312 * 4 3 2 6 6 C 1.52997 * 109.46760 * 65.00517 * 4 3 2 7 7 C 1.53006 * 109.47081 * 185.00474 * 4 3 2 8 8 N 1.46490 * 109.47115 * 175.00339 * 7 4 3 9 9 S 1.65601 * 120.00173 * 165.00089 * 8 7 4 10 10 O 1.42107 * 104.27291 * 308.92374 * 9 8 7 11 11 O 1.42096 * 104.27630 * 181.07099 * 9 8 7 12 12 C 1.81393 * 104.44983 * 64.99627 * 9 8 7 13 13 C 1.53002 * 109.47058 * 173.81620 * 12 9 8 14 14 C 1.50693 * 115.55104 * 65.19449 * 13 12 9 15 15 H 1.08004 * 120.00010 * 264.78345 * 14 13 12 16 16 C 1.37876 * 120.00214 * 84.78707 * 14 13 12 17 17 N 1.31516 * 120.00020 * 352.22829 * 16 14 13 18 18 Si 1.86799 * 120.00138 * 172.22983 * 16 14 13 19 19 H 1.48503 * 109.46741 * 90.00000 * 18 16 14 20 20 H 1.48499 * 109.47144 * 209.99508 * 18 16 14 21 21 H 1.48499 * 109.47353 * 330.00006 * 18 16 14 22 22 C 1.53007 * 117.49436 * 279.52085 * 13 12 9 23 23 C 1.53000 * 117.49730 * 210.86641 * 13 12 9 24 24 H 1.09002 * 109.47355 * 59.99257 * 1 2 3 25 25 H 1.08988 * 109.47752 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46881 * 299.99645 * 1 2 3 27 27 H 1.09001 * 109.46737 * 60.00732 * 3 2 1 28 28 H 1.08993 * 109.47518 * 300.00524 * 3 2 1 29 29 H 1.08999 * 109.47414 * 59.99905 * 6 4 3 30 30 H 1.09004 * 109.46809 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.47140 * 299.99467 * 6 4 3 32 32 H 1.08997 * 109.47140 * 55.00009 * 7 4 3 33 33 H 1.09003 * 109.46787 * 295.00430 * 7 4 3 34 34 H 0.97005 * 120.00085 * 344.99672 * 8 7 4 35 35 H 1.08997 * 109.47236 * 293.81609 * 12 9 8 36 36 H 1.08996 * 109.47383 * 53.81386 * 12 9 8 37 37 H 0.97000 * 120.00178 * 185.02788 * 17 16 14 38 38 H 1.08997 * 117.50283 * 0.02562 * 22 13 12 39 39 H 1.09001 * 117.48963 * 145.02035 * 22 13 12 40 40 H 1.08997 * 117.49994 * 214.97965 * 23 13 12 41 41 H 1.09005 * 117.50051 * 359.97400 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8515 0.5680 0.8409 6 6 3.9951 0.5368 -1.3084 7 6 4.1575 2.5767 0.1252 8 7 5.6123 2.4526 0.2446 9 16 6.5775 3.7800 0.0237 10 8 6.1475 4.3234 -1.2170 11 8 7.8988 3.2837 0.1874 12 6 6.1405 4.8899 1.3903 13 6 7.0798 6.0976 1.3868 14 6 6.9681 7.0044 0.1884 15 1 7.6357 6.8751 -0.6507 16 6 6.0139 7.9993 0.1632 17 7 5.1043 8.0621 1.1110 18 14 6.0129 9.2578 -1.2172 19 1 5.1706 8.7644 -2.3362 20 1 5.4650 10.5433 -0.7146 21 1 7.4024 9.4662 -1.6980 22 6 8.4659 5.9162 2.0089 23 6 7.4032 6.7449 2.7349 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.6792 1.1534 -2.1499 30 1 5.0817 0.4503 -1.3086 31 1 3.5520 -0.4550 -1.3980 32 1 3.7613 3.0730 1.0111 33 1 3.9144 3.1646 -0.7599 34 1 6.0103 1.5929 0.4531 35 1 5.1119 5.2293 1.2681 36 1 6.2372 4.3571 2.3362 37 1 4.3899 8.7159 1.0551 38 1 8.7087 4.9365 2.4202 39 1 9.2969 6.4532 1.5514 40 1 7.5355 7.8267 2.7549 41 1 6.9464 6.3107 3.6242 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451114992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:07 Heat of formation + Delta-G solvation = -131.472341 kcal Electronic energy + Delta-G solvation = -22167.585581 eV Core-core repulsion = 18788.339409 eV Total energy + Delta-G solvation = -3379.246172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.32965 -38.55213 -37.94608 -37.26565 -36.73749 -34.07537 -33.33562 -29.83519 -28.20192 -27.48267 -27.35109 -25.50957 -22.98109 -21.69322 -21.34545 -20.18337 -18.40654 -18.34629 -17.71951 -16.94756 -16.81323 -16.77020 -16.59618 -15.97850 -15.78705 -15.58602 -15.27394 -14.89330 -14.16294 -13.80866 -13.68573 -13.64487 -13.35057 -13.11763 -12.95780 -12.88386 -12.85522 -12.83599 -12.46700 -12.42198 -12.20673 -12.09956 -11.91426 -11.84038 -11.63602 -11.53836 -10.86179 -10.56814 -10.54345 -10.45653 -9.85079 -8.18627 -6.32846 -0.48923 1.39172 1.41647 1.50127 2.03858 2.40435 2.83944 2.98498 3.08923 3.39776 3.50072 3.79765 3.88458 4.02280 4.09046 4.33096 4.48277 4.49123 4.51149 4.52455 4.57714 4.61023 4.62130 4.71832 4.83271 4.86631 4.89922 4.94627 4.99185 5.09583 5.22726 5.28502 5.40248 5.48527 5.60013 5.72877 6.18121 6.24028 6.26092 6.73064 7.39331 8.88438 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.004609 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.106245 B = 6073.940617 C = 6706.168539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.063 3.937 4 C -0.088 4.088 5 H 0.097 0.903 6 C -0.146 4.146 7 C 0.113 3.887 8 N -1.112 6.112 9 S 2.625 3.375 10 O -0.993 6.993 11 O -0.996 6.996 12 C -0.552 4.552 13 C 0.010 3.990 14 C -0.535 4.535 15 H 0.048 0.952 16 C 0.045 3.955 17 N -0.891 5.891 18 Si 0.934 3.066 19 H -0.277 1.277 20 H -0.273 1.273 21 H -0.271 1.271 22 C -0.198 4.198 23 C -0.138 4.138 24 H 0.046 0.954 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.423 0.577 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.266 0.734 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 -14.151 1.909 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.014 4.014 4 C -0.108 4.108 5 H 0.115 0.885 6 C -0.204 4.204 7 C -0.013 4.013 8 N -0.874 5.874 9 S 2.722 3.278 10 O -0.983 6.983 11 O -0.986 6.986 12 C -0.685 4.685 13 C 0.008 3.992 14 C -0.573 4.573 15 H 0.066 0.934 16 C -0.158 4.158 17 N -0.527 5.527 18 Si 0.759 3.241 19 H -0.202 1.202 20 H -0.198 1.198 21 H -0.195 1.195 22 C -0.235 4.235 23 C -0.177 4.177 24 H 0.065 0.935 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.259 0.741 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.978 -13.902 1.226 16.075 hybrid contribution -0.496 0.994 -0.160 1.122 sum -8.474 -12.908 1.066 15.478 Atomic orbital electron populations 1.22914 0.79674 1.03743 1.00767 1.87809 1.21180 1.28196 1.95607 1.22538 0.92611 0.84778 1.01491 1.21205 0.93738 0.95276 1.00541 0.88518 1.21801 1.01256 1.01082 0.96240 1.21395 0.78800 0.98412 1.02708 1.55390 1.16678 1.25664 1.89651 1.04284 0.72938 0.73964 0.76576 1.93481 1.82508 1.79882 1.42395 1.93464 1.37842 1.79323 1.88008 1.29871 1.10258 1.10811 1.17568 1.18418 0.91897 0.94020 0.94850 1.20702 1.18860 1.15613 1.02077 0.93415 1.25484 0.94805 0.98175 0.97367 1.70013 1.13155 1.36167 1.33402 0.85922 0.78731 0.79250 0.80187 1.20223 1.19821 1.19521 1.23248 0.93127 1.01375 1.05740 1.22514 1.02238 0.97608 0.95383 0.93533 0.88471 0.93198 0.91630 0.92622 0.93161 0.92588 0.91406 0.89799 0.91305 0.74104 0.85645 0.84683 0.92510 0.88249 0.90061 0.91603 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.00 10.24 -148.98 -1.53 -9.52 16 3 C 0.06 1.16 5.32 71.98 0.38 1.55 16 4 C -0.09 -1.74 2.65 -10.79 -0.03 -1.77 16 5 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 6 C -0.15 -3.09 8.97 71.98 0.65 -2.45 16 7 C 0.11 2.74 5.52 86.38 0.48 3.22 16 8 N -1.11 -30.55 5.41 -187.50 -1.02 -31.57 16 9 S 2.63 102.63 5.19 -56.49 -0.29 102.33 16 10 O -0.99 -47.30 17.17 -127.65 -2.19 -49.49 16 11 O -1.00 -42.51 18.08 -127.65 -2.31 -44.82 16 12 C -0.55 -21.99 5.93 71.98 0.43 -21.56 16 13 C 0.01 0.49 1.32 -52.93 -0.07 0.42 16 14 C -0.54 -29.44 8.18 25.60 0.21 -29.23 16 15 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 16 C 0.04 2.42 5.38 84.65 0.46 2.88 16 17 N -0.89 -48.27 12.98 21.45 0.28 -47.99 16 18 Si 0.93 43.63 29.55 68.60 2.03 45.66 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 C -0.20 -8.42 9.96 30.62 0.30 -8.11 16 23 C -0.14 -6.11 9.49 30.62 0.29 -5.82 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.20 7.54 -2.38 -0.02 1.18 16 31 H 0.07 1.34 7.82 -2.39 -0.02 1.32 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.89 7.69 -2.39 -0.02 1.88 16 34 H 0.42 9.48 8.33 -96.74 -0.81 8.67 16 35 H 0.13 5.20 8.14 -2.39 -0.02 5.18 16 36 H 0.13 4.29 8.09 -2.39 -0.02 4.27 16 37 H 0.27 13.65 8.32 -92.71 -0.77 12.88 16 38 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 Total: -1.00 -69.18 355.14 -0.49 -69.67 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.19 Total: 25.02 kcal Atomic # 6 Polarization: -63.63 SS G_CDS: 4.34 Total: -59.29 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -0.74 Total: -79.56 kcal Atomic # 8 Polarization: -97.81 SS G_CDS: -6.02 Total: -103.83 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 102.63 SS G_CDS: -0.29 Total: 102.33 kcal Total: -69.18 -0.49 -69.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451114992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.802 kcal (2) G-P(sol) polarization free energy of solvation -69.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds