Wall clock time and date at job start Tue Mar 31 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00225 * 2 1 4 4 C 1.52993 * 109.47402 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47142 * 55.00005 * 4 3 2 6 6 C 1.53000 * 109.47323 * 295.00811 * 4 3 2 7 7 C 1.52997 * 109.47580 * 175.00056 * 4 3 2 8 8 N 1.46499 * 109.47314 * 185.00161 * 7 4 3 9 9 S 1.65603 * 119.99486 * 165.00136 * 8 7 4 10 10 O 1.42105 * 104.27183 * 181.06946 * 9 8 7 11 11 O 1.42094 * 104.27981 * 308.92538 * 9 8 7 12 12 C 1.81401 * 104.44975 * 65.00527 * 9 8 7 13 13 C 1.53003 * 109.46765 * 173.81272 * 12 9 8 14 14 C 1.50694 * 115.55402 * 65.19326 * 13 12 9 15 15 H 1.08004 * 119.99901 * 264.78375 * 14 13 12 16 16 C 1.37877 * 120.00189 * 84.77819 * 14 13 12 17 17 N 1.31506 * 120.00185 * 352.22849 * 16 14 13 18 18 Si 1.86798 * 119.99767 * 172.22526 * 16 14 13 19 19 H 1.48505 * 109.47443 * 60.00371 * 18 16 14 20 20 H 1.48500 * 109.47033 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47695 * 300.00462 * 18 16 14 22 22 C 1.53000 * 117.49724 * 279.51377 * 13 12 9 23 23 C 1.53003 * 117.49554 * 210.85904 * 13 12 9 24 24 H 1.08994 * 109.47490 * 59.99683 * 1 2 3 25 25 H 1.09004 * 109.47248 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46545 * 299.99093 * 1 2 3 27 27 H 1.09007 * 109.46916 * 60.00459 * 3 2 1 28 28 H 1.08995 * 109.46994 * 300.00794 * 3 2 1 29 29 H 1.09003 * 109.46554 * 299.99167 * 6 4 3 30 30 H 1.09004 * 109.47378 * 179.97438 * 6 4 3 31 31 H 1.08991 * 109.47612 * 59.99247 * 6 4 3 32 32 H 1.08998 * 109.46915 * 305.00502 * 7 4 3 33 33 H 1.08998 * 109.46550 * 65.00026 * 7 4 3 34 34 H 0.96993 * 120.00252 * 345.00422 * 8 7 4 35 35 H 1.08998 * 109.46557 * 293.80610 * 12 9 8 36 36 H 1.08993 * 109.47536 * 53.80697 * 12 9 8 37 37 H 0.96996 * 120.00284 * 185.01861 * 17 16 14 38 38 H 1.09004 * 117.49708 * 0.02562 * 22 13 12 39 39 H 1.09000 * 117.49599 * 145.01818 * 22 13 12 40 40 H 1.08999 * 117.50358 * 214.97861 * 23 13 12 41 41 H 1.08998 * 117.49883 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8508 0.5685 -0.8427 6 6 3.9963 0.5362 1.3063 7 6 4.1573 2.5768 -0.1263 8 7 5.6121 2.4528 -0.2471 9 16 6.5128 3.7423 -0.7649 10 8 7.8471 3.2537 -0.7813 11 8 5.8709 4.1601 -1.9618 12 6 6.3076 4.9895 0.5363 13 6 7.2215 6.1823 0.2480 14 6 6.8970 6.9632 -0.9993 15 1 7.4112 6.7432 -1.9232 16 6 5.9437 7.9585 -0.9611 17 7 5.2102 8.1255 0.1176 18 14 5.6940 9.0699 -2.4416 19 1 5.3085 8.2490 -3.6175 20 1 4.6185 10.0509 -2.1483 21 1 6.9567 9.7937 -2.7359 22 6 8.6954 6.0533 0.6374 23 6 7.7662 6.9609 1.4472 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5137 0.8901 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8463 -0.8899 29 1 3.6810 1.1524 2.1484 30 1 5.0829 0.4497 1.3056 31 1 3.5533 -0.4556 1.3959 32 1 3.7603 3.0735 -1.0116 33 1 3.9150 3.1642 0.7592 34 1 6.0476 1.6154 -0.0237 35 1 5.2704 5.3236 0.5589 36 1 6.5705 4.5550 1.5007 37 1 4.4911 8.7764 0.1192 38 1 9.0142 5.1184 1.0986 39 1 9.4305 6.5334 -0.0085 40 1 7.8903 8.0378 1.3339 41 1 7.4732 6.6236 2.4414 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451114993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:09 Heat of formation + Delta-G solvation = -107.754681 kcal Electronic energy + Delta-G solvation = -22160.361835 eV Core-core repulsion = 18782.144137 eV Total energy + Delta-G solvation = -3378.217697 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.52770 -36.75664 -36.45001 -36.10718 -35.04933 -32.26818 -32.04661 -28.16109 -27.50787 -26.52595 -25.45907 -24.61155 -21.21329 -20.58150 -19.68070 -18.64454 -17.06632 -16.82347 -16.39453 -16.18008 -15.57453 -15.16825 -15.03424 -14.73407 -14.45913 -14.20399 -13.73993 -13.25796 -13.05145 -13.03802 -12.58769 -11.93842 -11.83668 -11.76320 -11.62016 -11.30211 -11.22304 -11.11233 -11.03034 -10.90988 -10.86277 -10.81337 -10.59643 -10.45431 -10.11609 -9.84800 -9.72480 -9.19672 -8.96392 -8.56504 -8.08965 -6.14428 -4.24849 1.08898 3.32442 3.33992 3.35511 3.41122 3.68824 4.37135 4.55078 4.70554 4.75585 4.87829 5.04092 5.11713 5.13358 5.15220 5.21518 5.29300 5.38932 5.42534 5.51142 5.52972 5.65335 5.79109 5.86401 5.97050 6.02720 6.19463 6.22521 6.29029 6.37532 6.61162 6.72451 6.95232 6.98386 7.22544 7.30338 7.39080 7.80045 8.20407 8.80482 9.46268 10.93273 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.004660 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.357134 B = 6007.091126 C = 6780.687928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.064 3.936 4 C -0.097 4.097 5 H 0.087 0.913 6 C -0.145 4.145 7 C 0.122 3.878 8 N -1.132 6.132 9 S 2.608 3.392 10 O -0.974 6.974 11 O -0.950 6.950 12 C -0.554 4.554 13 C 0.043 3.957 14 C -0.517 4.517 15 H 0.068 0.932 16 C 0.083 3.917 17 N -0.876 5.876 18 Si 0.891 3.109 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.208 4.208 23 C -0.141 4.141 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.409 0.591 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 -12.818 4.011 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.013 4.013 4 C -0.116 4.116 5 H 0.105 0.895 6 C -0.203 4.203 7 C -0.005 4.005 8 N -0.889 5.889 9 S 2.705 3.295 10 O -0.965 6.965 11 O -0.940 6.940 12 C -0.687 4.687 13 C 0.041 3.959 14 C -0.554 4.554 15 H 0.086 0.914 16 C -0.122 4.122 17 N -0.511 5.511 18 Si 0.717 3.283 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.245 4.245 23 C -0.181 4.181 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.242 0.758 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.895 -12.645 3.232 14.761 hybrid contribution -0.689 0.730 0.127 1.012 sum -7.584 -11.915 3.359 14.518 Atomic orbital electron populations 1.22731 0.81111 1.02578 1.00087 1.87848 1.19564 1.28044 1.95462 1.22545 0.93253 0.84641 1.00868 1.21282 0.93195 0.96816 1.00353 0.89457 1.21805 1.01159 1.01105 0.96203 1.21166 0.80159 0.96743 1.02438 1.55963 1.15822 1.29852 1.87251 1.05118 0.73192 0.74218 0.77005 1.93505 1.36180 1.79139 1.87675 1.93532 1.75810 1.81902 1.42768 1.29973 1.11123 1.13185 1.14407 1.18272 0.87952 0.92984 0.96696 1.20496 1.23430 1.17566 0.93868 0.91389 1.24939 0.95007 0.96414 0.95863 1.69962 1.18581 1.34860 1.27689 0.86657 0.77987 0.80356 0.83272 1.19454 1.21136 1.19881 1.23197 0.95022 1.00970 1.05353 1.22550 1.03449 0.97694 0.94371 0.94007 0.89782 0.94085 0.92752 0.92654 0.92489 0.92406 0.91836 0.89929 0.91561 0.75778 0.84893 0.88233 0.92694 0.90665 0.89537 0.89607 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.24 10.24 -35.23 -0.36 -4.60 16 3 C 0.06 0.66 5.32 37.15 0.20 0.86 16 4 C -0.10 -1.06 2.73 -90.63 -0.25 -1.31 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.15 -1.44 8.96 37.16 0.33 -1.10 16 7 C 0.12 1.58 5.52 -4.04 -0.02 1.56 16 8 N -1.13 -16.62 5.76 -10.62 -0.06 -16.68 16 9 S 2.61 52.18 5.19 -107.50 -0.56 51.62 16 10 O -0.97 -21.35 18.08 -57.54 -1.04 -22.39 16 11 O -0.95 -22.54 17.17 -57.54 -0.99 -23.52 16 12 C -0.55 -11.43 5.93 37.16 0.22 -11.21 16 13 C 0.04 1.05 1.32 -155.66 -0.21 0.84 16 14 C -0.52 -14.07 8.18 -34.44 -0.28 -14.35 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 17 N -0.88 -23.82 12.98 55.43 0.72 -23.10 16 18 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.21 -4.57 9.96 -26.70 -0.27 -4.83 16 23 C -0.14 -3.21 9.49 -26.69 -0.25 -3.46 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 6.90 -51.93 -0.36 0.18 16 31 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 32 H 0.08 1.15 7.69 -51.93 -0.40 0.75 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.41 5.11 7.37 -34.47 -0.25 4.85 16 35 H 0.13 2.82 8.14 -51.93 -0.42 2.40 16 36 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 37 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 40 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -32.72 353.96 -8.37 -41.09 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.88 Total: 5.54 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 0.49 Total: -29.51 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.66 Total: -39.78 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -2.39 Total: -50.52 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 52.18 SS G_CDS: -0.56 Total: 51.62 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.72 -8.37 -41.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451114993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.666 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds