Wall clock time and date at job start Tue Mar 31 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00225 * 2 1 4 4 C 1.52993 * 109.47402 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47142 * 55.00005 * 4 3 2 6 6 C 1.53000 * 109.47323 * 295.00811 * 4 3 2 7 7 C 1.52997 * 109.47580 * 175.00056 * 4 3 2 8 8 N 1.46499 * 109.47314 * 185.00161 * 7 4 3 9 9 S 1.65603 * 119.99486 * 165.00136 * 8 7 4 10 10 O 1.42105 * 104.27183 * 181.06946 * 9 8 7 11 11 O 1.42094 * 104.27981 * 308.92538 * 9 8 7 12 12 C 1.81401 * 104.44975 * 65.00527 * 9 8 7 13 13 C 1.53003 * 109.46765 * 173.81272 * 12 9 8 14 14 C 1.50694 * 115.55402 * 65.19326 * 13 12 9 15 15 H 1.08004 * 119.99901 * 264.78375 * 14 13 12 16 16 C 1.37877 * 120.00189 * 84.77819 * 14 13 12 17 17 N 1.31506 * 120.00185 * 352.22849 * 16 14 13 18 18 Si 1.86798 * 119.99767 * 172.22526 * 16 14 13 19 19 H 1.48505 * 109.47443 * 60.00371 * 18 16 14 20 20 H 1.48500 * 109.47033 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47695 * 300.00462 * 18 16 14 22 22 C 1.53000 * 117.49724 * 279.51377 * 13 12 9 23 23 C 1.53003 * 117.49554 * 210.85904 * 13 12 9 24 24 H 1.08994 * 109.47490 * 59.99683 * 1 2 3 25 25 H 1.09004 * 109.47248 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46545 * 299.99093 * 1 2 3 27 27 H 1.09007 * 109.46916 * 60.00459 * 3 2 1 28 28 H 1.08995 * 109.46994 * 300.00794 * 3 2 1 29 29 H 1.09003 * 109.46554 * 299.99167 * 6 4 3 30 30 H 1.09004 * 109.47378 * 179.97438 * 6 4 3 31 31 H 1.08991 * 109.47612 * 59.99247 * 6 4 3 32 32 H 1.08998 * 109.46915 * 305.00502 * 7 4 3 33 33 H 1.08998 * 109.46550 * 65.00026 * 7 4 3 34 34 H 0.96993 * 120.00252 * 345.00422 * 8 7 4 35 35 H 1.08998 * 109.46557 * 293.80610 * 12 9 8 36 36 H 1.08993 * 109.47536 * 53.80697 * 12 9 8 37 37 H 0.96996 * 120.00284 * 185.01861 * 17 16 14 38 38 H 1.09004 * 117.49708 * 0.02562 * 22 13 12 39 39 H 1.09000 * 117.49599 * 145.01818 * 22 13 12 40 40 H 1.08999 * 117.50358 * 214.97861 * 23 13 12 41 41 H 1.08998 * 117.49883 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8508 0.5685 -0.8427 6 6 3.9963 0.5362 1.3063 7 6 4.1573 2.5768 -0.1263 8 7 5.6121 2.4528 -0.2471 9 16 6.5128 3.7423 -0.7649 10 8 7.8471 3.2537 -0.7813 11 8 5.8709 4.1601 -1.9618 12 6 6.3076 4.9895 0.5363 13 6 7.2215 6.1823 0.2480 14 6 6.8970 6.9632 -0.9993 15 1 7.4112 6.7432 -1.9232 16 6 5.9437 7.9585 -0.9611 17 7 5.2102 8.1255 0.1176 18 14 5.6940 9.0699 -2.4416 19 1 5.3085 8.2490 -3.6175 20 1 4.6185 10.0509 -2.1483 21 1 6.9567 9.7937 -2.7359 22 6 8.6954 6.0533 0.6374 23 6 7.7662 6.9609 1.4472 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5137 0.8901 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8463 -0.8899 29 1 3.6810 1.1524 2.1484 30 1 5.0829 0.4497 1.3056 31 1 3.5533 -0.4556 1.3959 32 1 3.7603 3.0735 -1.0116 33 1 3.9150 3.1642 0.7592 34 1 6.0476 1.6154 -0.0237 35 1 5.2704 5.3236 0.5589 36 1 6.5705 4.5550 1.5007 37 1 4.4911 8.7764 0.1192 38 1 9.0142 5.1184 1.0986 39 1 9.4305 6.5334 -0.0085 40 1 7.8903 8.0378 1.3339 41 1 7.4732 6.6236 2.4414 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451114993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:09 Heat of formation + Delta-G solvation = -131.319782 kcal Electronic energy + Delta-G solvation = -22161.383694 eV Core-core repulsion = 18782.144137 eV Total energy + Delta-G solvation = -3379.239557 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.34067 -38.55070 -37.95113 -37.28886 -36.75032 -34.07506 -33.31424 -29.83311 -28.20348 -27.48621 -27.36133 -25.51631 -22.97833 -21.64280 -21.30662 -20.21533 -18.46780 -18.32572 -17.79634 -16.99593 -16.81699 -16.72613 -16.60975 -15.98068 -15.81196 -15.41510 -15.31870 -14.88373 -14.05883 -13.99509 -13.73251 -13.61728 -13.33439 -13.11828 -12.99315 -12.89372 -12.84033 -12.77349 -12.43401 -12.42700 -12.21033 -12.05750 -11.91728 -11.84983 -11.63497 -11.52770 -10.86692 -10.58000 -10.54196 -10.47104 -9.85208 -8.18361 -6.32716 -0.49395 1.40420 1.41696 1.49117 2.03168 2.40765 2.83262 2.98284 3.09076 3.40017 3.49192 3.81378 3.89488 4.02395 4.07745 4.33005 4.43652 4.49065 4.50833 4.53029 4.58229 4.60610 4.61962 4.71347 4.84636 4.87534 4.90226 4.95651 4.99475 5.11135 5.23021 5.30731 5.43212 5.48697 5.60303 5.72867 6.17288 6.24158 6.25299 6.73019 7.39447 8.88541 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.004660 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.357134 B = 6007.091126 C = 6780.687928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.063 3.937 4 C -0.091 4.091 5 H 0.081 0.919 6 C -0.144 4.144 7 C 0.114 3.886 8 N -1.113 6.113 9 S 2.624 3.376 10 O -0.996 6.996 11 O -0.994 6.994 12 C -0.551 4.551 13 C 0.011 3.989 14 C -0.537 4.537 15 H 0.048 0.952 16 C 0.045 3.955 17 N -0.891 5.891 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.273 1.273 21 H -0.269 1.269 22 C -0.198 4.198 23 C -0.138 4.138 24 H 0.045 0.955 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.422 0.578 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.266 0.734 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -13.728 5.235 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.014 4.014 4 C -0.111 4.111 5 H 0.099 0.901 6 C -0.201 4.201 7 C -0.013 4.013 8 N -0.875 5.875 9 S 2.722 3.278 10 O -0.986 6.986 11 O -0.984 6.984 12 C -0.683 4.683 13 C 0.008 3.992 14 C -0.574 4.574 15 H 0.066 0.934 16 C -0.158 4.158 17 N -0.527 5.527 18 Si 0.759 3.241 19 H -0.203 1.203 20 H -0.198 1.198 21 H -0.194 1.194 22 C -0.235 4.235 23 C -0.177 4.177 24 H 0.064 0.936 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.259 0.741 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.493 -13.557 4.460 16.119 hybrid contribution -0.523 0.957 -0.245 1.117 sum -8.016 -12.600 4.215 15.517 Atomic orbital electron populations 1.22917 0.79659 1.03756 1.00775 1.87810 1.21208 1.28218 1.95608 1.22544 0.92682 0.84768 1.01456 1.21205 0.93761 0.95284 1.00871 0.90105 1.21801 1.01472 1.01161 0.95656 1.21385 0.78776 0.98409 1.02696 1.55423 1.16400 1.28877 1.86803 1.04312 0.72672 0.74497 0.76362 1.93465 1.37709 1.79526 1.87926 1.93479 1.76587 1.83048 1.45295 1.29855 1.09878 1.12236 1.16379 1.18410 0.89952 0.94531 0.96269 1.20681 1.23543 1.18605 0.94575 0.93428 1.25477 0.95011 0.97354 0.97946 1.69999 1.18830 1.35306 1.28542 0.85993 0.78331 0.79158 0.80661 1.20292 1.19790 1.19441 1.23247 0.93865 1.01695 1.04675 1.22511 1.03469 0.96661 0.95066 0.93603 0.88456 0.93104 0.91551 0.92756 0.91713 0.91914 0.91730 0.91283 0.89787 0.74147 0.85623 0.84624 0.92488 0.88235 0.90072 0.91627 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.22 10.24 -148.98 -1.53 -9.74 16 3 C 0.06 1.19 5.32 71.98 0.38 1.57 16 4 C -0.09 -1.84 2.73 -10.80 -0.03 -1.87 16 5 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 6 C -0.14 -2.49 8.96 71.98 0.65 -1.85 16 7 C 0.11 2.78 5.52 86.38 0.48 3.26 16 8 N -1.11 -30.92 5.76 -187.50 -1.08 -32.00 16 9 S 2.62 103.09 5.19 -56.49 -0.29 102.79 16 10 O -1.00 -42.64 18.08 -127.65 -2.31 -44.95 16 11 O -0.99 -47.73 17.17 -127.65 -2.19 -49.92 16 12 C -0.55 -21.90 5.93 71.98 0.43 -21.47 16 13 C 0.01 0.50 1.32 -52.93 -0.07 0.43 16 14 C -0.54 -29.53 8.18 25.60 0.21 -29.32 16 15 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 16 C 0.05 2.45 5.38 84.66 0.46 2.91 16 17 N -0.89 -48.21 12.98 21.45 0.28 -47.93 16 18 Si 0.93 43.61 29.55 68.60 2.03 45.63 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 C -0.20 -8.40 9.96 30.62 0.30 -8.10 16 23 C -0.14 -6.08 9.49 30.62 0.29 -5.79 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.01 6.90 -2.38 -0.02 1.00 16 31 H 0.06 1.12 7.82 -2.39 -0.02 1.11 16 32 H 0.07 1.90 7.69 -2.39 -0.02 1.88 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.42 9.66 7.37 -96.75 -0.71 8.94 16 35 H 0.13 5.20 8.14 -2.39 -0.02 5.18 16 36 H 0.14 4.29 8.09 -2.39 -0.02 4.27 16 37 H 0.27 13.69 8.32 -92.71 -0.77 12.92 16 38 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 39 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -69.32 353.96 -0.46 -69.78 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.29 Total: 24.97 kcal Atomic # 6 Polarization: -62.98 SS G_CDS: 4.34 Total: -58.64 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -0.80 Total: -79.93 kcal Atomic # 8 Polarization: -98.59 SS G_CDS: -6.02 Total: -104.61 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 103.09 SS G_CDS: -0.29 Total: 102.79 kcal Total: -69.32 -0.46 -69.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451114993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.539 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds