Wall clock time and date at job start Tue Mar 31 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.32540 * 2 1 4 4 C 1.54909 * 110.36315 * 122.23787 * 2 1 3 5 5 C 1.55159 * 101.57990 * 155.84951 * 4 2 1 6 6 H 1.08995 * 110.87585 * 82.93006 * 5 4 2 7 7 O 1.42901 * 110.71824 * 206.13055 * 5 4 2 8 8 C 1.54324 * 102.94134 * 324.49367 * 5 4 2 9 9 N 1.47020 * 107.39983 * 22.11770 * 8 5 4 10 10 S 1.65607 * 125.64915 * 181.10210 * 9 8 5 11 11 O 1.42095 * 104.27758 * 206.09623 * 10 9 8 12 12 O 1.42104 * 104.27244 * 333.95537 * 10 9 8 13 13 C 1.81398 * 104.44868 * 90.02229 * 10 9 8 14 14 C 1.53001 * 109.47395 * 180.02562 * 13 10 9 15 15 C 1.53001 * 109.47029 * 300.00470 * 14 13 10 16 16 C 1.52999 * 109.46943 * 60.00011 * 14 13 10 17 17 C 1.50696 * 109.47323 * 180.02562 * 14 13 10 18 18 H 1.08000 * 120.00010 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99901 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00089 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00055 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47106 * 89.99933 * 21 19 17 23 23 H 1.48498 * 109.47121 * 210.00010 * 21 19 17 24 24 H 1.48506 * 109.46870 * 329.99830 * 21 19 17 25 25 H 1.09001 * 109.47154 * 299.21749 * 1 2 3 26 26 H 1.09000 * 109.47067 * 59.21876 * 1 2 3 27 27 H 1.08995 * 109.47369 * 179.21892 * 1 2 3 28 28 H 1.08994 * 111.00889 * 37.76930 * 4 2 1 29 29 H 1.09006 * 111.00238 * 273.91742 * 4 2 1 30 30 H 0.96703 * 113.99785 * 174.97284 * 7 5 4 31 31 H 1.09002 * 109.88322 * 141.61300 * 8 5 4 32 32 H 1.09000 * 109.88025 * 262.62465 * 8 5 4 33 33 H 1.08999 * 109.47318 * 300.00373 * 13 10 9 34 34 H 1.09000 * 109.47370 * 60.00371 * 13 10 9 35 35 H 1.09002 * 109.46801 * 59.99666 * 15 14 13 36 36 H 1.09003 * 109.47042 * 179.97438 * 15 14 13 37 37 H 1.09000 * 109.46901 * 299.99195 * 15 14 13 38 38 H 1.08999 * 109.47359 * 60.00018 * 16 14 13 39 39 H 1.08994 * 109.47345 * 180.02562 * 16 14 13 40 40 H 1.09002 * 109.47474 * 300.00694 * 16 14 13 41 41 H 0.96996 * 120.00050 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7747 1.2284 5 6 3.4777 -1.1990 0.7354 6 1 4.1968 -0.3915 0.8726 7 8 3.9139 -2.3817 1.4086 8 6 3.2493 -1.4777 -0.7652 9 7 2.0424 -0.7423 -1.1702 10 16 1.3729 -0.7456 -2.6849 11 8 0.6819 0.4934 -2.7653 12 8 2.4634 -1.0337 -3.5492 13 6 0.1994 -2.1285 -2.6581 14 6 -0.4919 -2.2374 -4.0187 15 6 -1.2422 -0.9373 -4.3150 16 6 0.5572 -2.4798 -5.1057 17 6 -1.4672 -3.3859 -3.9962 18 1 -1.5829 -3.9786 -3.1008 19 6 -2.2120 -3.6799 -5.1187 20 7 -2.0707 -2.9584 -6.2092 21 14 -3.4216 -5.1031 -5.0906 22 1 -4.7500 -4.6149 -4.6412 23 1 -3.5411 -5.6782 -6.4545 24 1 -2.9352 -6.1478 -4.1539 25 1 -0.3633 0.5016 0.8969 26 1 -0.3633 0.5259 -0.8829 27 1 -0.3634 -1.0275 -0.0140 28 1 1.4510 -1.6465 1.4426 29 1 2.1398 -0.1242 2.1002 30 1 4.7542 -2.7324 1.0829 31 1 4.1065 -1.1295 -1.3416 32 1 3.1040 -2.5459 -0.9259 33 1 0.7340 -3.0548 -2.4474 34 1 -0.5478 -1.9561 -1.8834 35 1 -0.5369 -0.1064 -4.3311 36 1 -1.7343 -1.0147 -5.2845 37 1 -1.9896 -0.7647 -3.5406 38 1 1.0918 -3.4059 -4.8947 39 1 0.0649 -2.5569 -6.0750 40 1 1.2625 -1.6488 -5.1218 41 1 -2.5944 -3.1655 -6.9989 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451447536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:39 Heat of formation + Delta-G solvation = -120.953190 kcal Electronic energy + Delta-G solvation = -23313.916115 eV Core-core repulsion = 19935.126088 eV Total energy + Delta-G solvation = -3378.790028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.21604 -36.68669 -36.29296 -35.98099 -35.30496 -31.69776 -31.20725 -29.95151 -26.65218 -25.74481 -25.64833 -25.22700 -21.97139 -21.22330 -19.37416 -18.51327 -17.42420 -17.16488 -16.40141 -15.96184 -15.41338 -15.06851 -14.81959 -14.42290 -13.88819 -13.76291 -13.24067 -13.09379 -13.04670 -12.54900 -12.42339 -12.29854 -12.09454 -11.90948 -11.57560 -11.45392 -11.16644 -11.08355 -10.98143 -10.93330 -10.73706 -10.63951 -10.39426 -10.29762 -10.25591 -10.10090 -9.66426 -9.59661 -8.94242 -8.62715 -8.41066 -6.04259 -4.16230 0.78591 3.04165 3.25286 3.32563 3.34835 3.92138 4.22757 4.32000 4.38235 4.40100 4.81008 4.85768 5.00885 5.20761 5.21241 5.22830 5.45937 5.56003 5.60301 5.66121 5.68330 5.74282 5.85444 6.03691 6.17179 6.32045 6.40227 6.50976 6.69503 6.78054 6.88907 7.02341 7.29901 7.37796 7.48908 7.66949 7.96484 8.08416 8.31932 8.82276 9.49202 10.97098 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.005132 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.658271 B = 5455.032703 C = 5704.322893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.154 3.846 3 H 0.079 0.921 4 C -0.120 4.120 5 C 0.094 3.906 6 H 0.074 0.926 7 O -0.559 6.559 8 C 0.089 3.911 9 N -1.016 6.016 10 S 2.608 3.392 11 O -0.957 6.957 12 O -0.962 6.962 13 C -0.581 4.581 14 C 0.082 3.918 15 C -0.163 4.163 16 C -0.164 4.164 17 C -0.501 4.501 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.381 0.619 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.096 0.904 40 H 0.026 0.974 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.140 3.966 13.444 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.048 3.952 3 H 0.097 0.903 4 C -0.159 4.159 5 C 0.034 3.966 6 H 0.091 0.909 7 O -0.364 6.364 8 C -0.038 4.038 9 N -0.853 5.853 10 S 2.708 3.292 11 O -0.947 6.947 12 O -0.953 6.953 13 C -0.715 4.715 14 C 0.080 3.920 15 C -0.221 4.221 16 C -0.222 4.222 17 C -0.541 4.541 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.228 0.772 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.046 0.954 36 H 0.114 0.886 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.045 0.955 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.746 4.714 12.823 16.221 hybrid contribution -0.425 -1.476 0.003 1.536 sum 8.321 3.238 12.825 15.627 Atomic orbital electron populations 1.22534 0.94078 1.03699 1.05204 1.21562 0.94631 0.95306 0.83677 0.90287 1.22899 0.94653 1.01000 0.97376 1.22861 0.96484 0.87297 0.89989 0.90852 1.86541 1.43836 1.43608 1.62425 1.22387 0.88146 0.97162 0.96103 1.59066 1.37829 1.60827 1.27557 1.05361 0.75520 0.77438 0.70856 1.93513 1.75390 1.41403 1.84432 1.93526 1.52672 1.86650 1.62410 1.30636 1.14243 1.16581 1.10051 1.17939 0.93097 0.96239 0.84767 1.22273 1.00234 0.94891 1.04681 1.22277 0.97055 0.98708 1.04116 1.20937 1.21259 1.13351 0.98531 0.92314 1.24939 0.96873 0.96520 0.95394 1.69800 1.40741 1.39103 1.02547 0.86534 0.81362 0.82372 0.77363 1.20622 1.21109 1.19961 0.90416 0.89097 0.91460 0.89356 0.89632 0.77186 0.90947 0.90852 0.86549 0.86280 0.95409 0.88640 0.94432 0.94490 0.88584 0.95473 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.44 8.60 37.16 0.32 -2.12 16 2 C 0.15 1.87 3.63 -66.24 -0.24 1.63 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.12 -1.20 6.23 -24.58 -0.15 -1.35 16 5 C 0.09 0.91 4.33 -24.90 -0.11 0.81 16 6 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 7 O -0.56 -5.28 13.39 -35.23 -0.47 -5.75 16 8 C 0.09 1.08 6.66 -3.06 -0.02 1.06 16 9 N -1.02 -14.93 3.52 -104.23 -0.37 -15.30 16 10 S 2.61 49.84 4.11 -107.50 -0.44 49.40 16 11 O -0.96 -19.91 13.22 -57.54 -0.76 -20.67 16 12 O -0.96 -20.73 15.22 -57.54 -0.88 -21.60 16 13 C -0.58 -11.62 5.12 37.16 0.19 -11.43 16 14 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 15 C -0.16 -4.01 7.77 37.16 0.29 -3.73 16 16 C -0.16 -4.08 7.78 37.16 0.29 -3.79 16 17 C -0.50 -13.22 8.01 -34.44 -0.28 -13.50 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.88 -24.16 9.35 55.43 0.52 -23.64 16 21 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.34 6.04 -51.93 -0.31 1.03 16 27 H 0.07 0.82 7.09 -51.93 -0.37 0.45 16 28 H 0.09 0.94 8.06 -51.93 -0.42 0.52 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.38 1.98 9.11 45.56 0.42 2.39 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 33 H 0.12 2.16 8.14 -51.92 -0.42 1.73 16 34 H 0.12 2.17 6.82 -51.92 -0.35 1.81 16 35 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 36 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 40 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 41 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -32.25 322.89 -8.01 -40.27 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.58 Total: 5.64 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 0.12 Total: -28.88 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.15 Total: -38.94 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -2.11 Total: -48.02 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 49.84 SS G_CDS: -0.44 Total: 49.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.25 -8.01 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451447536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.687 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds