Wall clock time and date at job start Tue Mar 31 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.32540 * 2 1 4 4 C 1.54909 * 110.36315 * 122.23787 * 2 1 3 5 5 C 1.55159 * 101.57990 * 155.84951 * 4 2 1 6 6 H 1.08995 * 110.87585 * 82.93006 * 5 4 2 7 7 O 1.42901 * 110.71824 * 206.13055 * 5 4 2 8 8 C 1.54324 * 102.94134 * 324.49367 * 5 4 2 9 9 N 1.47020 * 107.39983 * 22.11770 * 8 5 4 10 10 S 1.65607 * 125.64915 * 181.10210 * 9 8 5 11 11 O 1.42095 * 104.27758 * 206.09623 * 10 9 8 12 12 O 1.42104 * 104.27244 * 333.95537 * 10 9 8 13 13 C 1.81398 * 104.44868 * 90.02229 * 10 9 8 14 14 C 1.53001 * 109.47395 * 180.02562 * 13 10 9 15 15 C 1.53001 * 109.47029 * 300.00470 * 14 13 10 16 16 C 1.52999 * 109.46943 * 60.00011 * 14 13 10 17 17 C 1.50696 * 109.47323 * 180.02562 * 14 13 10 18 18 H 1.08000 * 120.00010 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99901 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00089 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00055 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47106 * 89.99933 * 21 19 17 23 23 H 1.48498 * 109.47121 * 210.00010 * 21 19 17 24 24 H 1.48506 * 109.46870 * 329.99830 * 21 19 17 25 25 H 1.09001 * 109.47154 * 299.21749 * 1 2 3 26 26 H 1.09000 * 109.47067 * 59.21876 * 1 2 3 27 27 H 1.08995 * 109.47369 * 179.21892 * 1 2 3 28 28 H 1.08994 * 111.00889 * 37.76930 * 4 2 1 29 29 H 1.09006 * 111.00238 * 273.91742 * 4 2 1 30 30 H 0.96703 * 113.99785 * 174.97284 * 7 5 4 31 31 H 1.09002 * 109.88322 * 141.61300 * 8 5 4 32 32 H 1.09000 * 109.88025 * 262.62465 * 8 5 4 33 33 H 1.08999 * 109.47318 * 300.00373 * 13 10 9 34 34 H 1.09000 * 109.47370 * 60.00371 * 13 10 9 35 35 H 1.09002 * 109.46801 * 59.99666 * 15 14 13 36 36 H 1.09003 * 109.47042 * 179.97438 * 15 14 13 37 37 H 1.09000 * 109.46901 * 299.99195 * 15 14 13 38 38 H 1.08999 * 109.47359 * 60.00018 * 16 14 13 39 39 H 1.08994 * 109.47345 * 180.02562 * 16 14 13 40 40 H 1.09002 * 109.47474 * 300.00694 * 16 14 13 41 41 H 0.96996 * 120.00050 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7747 1.2284 5 6 3.4777 -1.1990 0.7354 6 1 4.1968 -0.3915 0.8726 7 8 3.9139 -2.3817 1.4086 8 6 3.2493 -1.4777 -0.7652 9 7 2.0424 -0.7423 -1.1702 10 16 1.3729 -0.7456 -2.6849 11 8 0.6819 0.4934 -2.7653 12 8 2.4634 -1.0337 -3.5492 13 6 0.1994 -2.1285 -2.6581 14 6 -0.4919 -2.2374 -4.0187 15 6 -1.2422 -0.9373 -4.3150 16 6 0.5572 -2.4798 -5.1057 17 6 -1.4672 -3.3859 -3.9962 18 1 -1.5829 -3.9786 -3.1008 19 6 -2.2120 -3.6799 -5.1187 20 7 -2.0707 -2.9584 -6.2092 21 14 -3.4216 -5.1031 -5.0906 22 1 -4.7500 -4.6149 -4.6412 23 1 -3.5411 -5.6782 -6.4545 24 1 -2.9352 -6.1478 -4.1539 25 1 -0.3633 0.5016 0.8969 26 1 -0.3633 0.5259 -0.8829 27 1 -0.3634 -1.0275 -0.0140 28 1 1.4510 -1.6465 1.4426 29 1 2.1398 -0.1242 2.1002 30 1 4.7542 -2.7324 1.0829 31 1 4.1065 -1.1295 -1.3416 32 1 3.1040 -2.5459 -0.9259 33 1 0.7340 -3.0548 -2.4474 34 1 -0.5478 -1.9561 -1.8834 35 1 -0.5369 -0.1064 -4.3311 36 1 -1.7343 -1.0147 -5.2845 37 1 -1.9896 -0.7647 -3.5406 38 1 1.0918 -3.4059 -4.8947 39 1 0.0649 -2.5569 -6.0750 40 1 1.2625 -1.6488 -5.1218 41 1 -2.5944 -3.1655 -6.9989 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451447536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:39 Heat of formation + Delta-G solvation = -145.299346 kcal Electronic energy + Delta-G solvation = -23314.971844 eV Core-core repulsion = 19935.126088 eV Total energy + Delta-G solvation = -3379.845756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09732 -38.24491 -38.16756 -36.97355 -36.75538 -33.66777 -32.20968 -30.85103 -28.35487 -27.73122 -27.27942 -26.57245 -22.98193 -22.08161 -21.23652 -19.84205 -18.63747 -18.10946 -17.91855 -17.47031 -16.95683 -16.68074 -16.40571 -15.42744 -15.11285 -14.84381 -14.77605 -14.54711 -14.43909 -14.14594 -13.87752 -13.59001 -13.35609 -13.11581 -13.00003 -12.91018 -12.82552 -12.74433 -12.51224 -12.41159 -12.21424 -12.17046 -11.97388 -11.92013 -11.61391 -11.58475 -11.38770 -10.99796 -10.67280 -10.43741 -9.95695 -8.05144 -6.24018 -0.70950 1.42700 1.44381 1.53201 1.72914 2.42617 2.83303 3.06501 3.17543 3.22145 3.53483 3.68924 3.97524 4.09666 4.13176 4.14774 4.33719 4.39073 4.54745 4.59897 4.72054 4.73889 4.82258 4.83188 4.94271 4.94898 5.01202 5.02953 5.09963 5.27920 5.33068 5.37733 5.44483 5.52230 5.62001 5.93753 6.08143 6.31469 6.80181 6.88847 7.44294 8.94862 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.005132 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.658271 B = 5455.032703 C = 5704.322893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.145 3.855 3 H 0.091 0.909 4 C -0.115 4.115 5 C 0.104 3.896 6 H 0.098 0.902 7 O -0.570 6.570 8 C 0.076 3.924 9 N -1.014 6.014 10 S 2.627 3.373 11 O -0.978 6.978 12 O -0.990 6.990 13 C -0.586 4.586 14 C 0.070 3.930 15 C -0.158 4.158 16 C -0.160 4.160 17 C -0.518 4.518 18 H 0.061 0.939 19 C 0.019 3.981 20 N -0.907 5.907 21 Si 0.955 3.045 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.269 1.269 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.398 0.602 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 3.721 15.894 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.154 4.154 5 C 0.044 3.956 6 H 0.116 0.884 7 O -0.378 6.378 8 C -0.050 4.050 9 N -0.854 5.854 10 S 2.726 3.274 11 O -0.968 6.968 12 O -0.981 6.981 13 C -0.718 4.718 14 C 0.068 3.932 15 C -0.216 4.216 16 C -0.218 4.218 17 C -0.557 4.557 18 H 0.079 0.921 19 C -0.181 4.181 20 N -0.546 5.546 21 Si 0.781 3.219 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.193 1.193 25 H 0.126 0.874 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.132 0.868 30 H 0.249 0.751 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.399 4.454 15.267 18.473 hybrid contribution -0.568 -1.379 -0.702 1.649 sum 8.831 3.075 14.565 17.308 Atomic orbital electron populations 1.22584 0.94493 1.03549 1.05403 1.21877 0.94518 0.96063 0.83465 0.89072 1.22907 0.94486 1.00972 0.97045 1.22833 0.97011 0.88083 0.87707 0.88436 1.86504 1.45298 1.43667 1.62368 1.22714 0.86995 0.96914 0.98369 1.58693 1.38430 1.61329 1.26949 1.04436 0.74778 0.76526 0.71633 1.93482 1.75937 1.42024 1.85380 1.93481 1.53319 1.86847 1.64455 1.30585 1.15129 1.18248 1.07882 1.17928 0.93002 0.95423 0.86889 1.22187 1.00358 0.95561 1.03451 1.22208 0.97188 0.98979 1.03379 1.21264 1.21795 1.14023 0.98646 0.92095 1.25677 0.98489 0.98742 0.95184 1.69937 1.41409 1.40301 1.02957 0.85605 0.79343 0.79699 0.77275 1.20221 1.21101 1.19306 0.87446 0.91804 0.91685 0.90020 0.86806 0.75097 0.90630 0.90927 0.85357 0.84781 0.94928 0.90989 0.94005 0.94258 0.90847 0.95085 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.64 8.60 71.98 0.62 -4.02 16 2 C 0.15 3.17 3.63 45.41 0.16 3.34 16 3 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.12 -1.89 6.23 31.99 0.20 -1.69 16 5 C 0.10 1.66 4.33 31.78 0.14 1.80 16 6 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 7 O -0.57 -8.88 13.39 -148.98 -1.99 -10.88 16 8 C 0.08 1.68 6.66 86.73 0.58 2.26 16 9 N -1.01 -28.18 3.52 -483.66 -1.70 -29.88 16 10 S 2.63 99.30 4.11 -56.49 -0.23 99.06 16 11 O -0.98 -40.63 13.22 -127.65 -1.69 -42.32 16 12 O -0.99 -42.60 15.22 -127.65 -1.94 -44.54 16 13 C -0.59 -23.16 5.12 71.98 0.37 -22.79 16 14 C 0.07 3.43 0.52 -52.93 -0.03 3.40 16 15 C -0.16 -7.91 7.77 71.98 0.56 -7.35 16 16 C -0.16 -8.11 7.78 71.98 0.56 -7.55 16 17 C -0.52 -27.36 8.01 25.60 0.21 -27.15 16 18 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 19 C 0.02 0.99 5.15 84.66 0.44 1.43 16 20 N -0.91 -50.52 9.35 21.45 0.20 -50.32 16 21 Si 0.95 42.37 29.54 68.60 2.03 44.40 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.83 6.04 -2.39 -0.01 1.82 16 27 H 0.06 1.49 7.09 -2.39 -0.02 1.47 16 28 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 29 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.40 2.91 9.11 -74.06 -0.67 2.23 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.60 8.05 -2.39 -0.02 1.58 16 33 H 0.13 4.67 8.14 -2.39 -0.02 4.65 16 34 H 0.13 4.79 6.82 -2.39 -0.02 4.78 16 35 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 36 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 4.04 6.07 -2.39 -0.01 4.02 16 40 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 41 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -69.13 322.89 -1.18 -70.31 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.36 Total: 22.50 kcal Atomic # 6 Polarization: -62.13 SS G_CDS: 3.80 Total: -58.33 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -1.50 Total: -80.20 kcal Atomic # 8 Polarization: -92.12 SS G_CDS: -5.63 Total: -97.74 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 99.30 SS G_CDS: -0.23 Total: 99.06 kcal Total: -69.13 -1.18 -70.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451447536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.992 kcal (2) G-P(sol) polarization free energy of solvation -69.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds