Wall clock time and date at job start Tue Mar 31 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47246 * 2 1 4 4 C 1.46497 * 119.99877 * 275.00242 * 3 2 1 5 5 C 1.52999 * 109.47268 * 274.99865 * 4 3 2 6 6 H 1.09004 * 109.47076 * 305.00185 * 5 4 3 7 7 C 1.52997 * 109.47354 * 184.99996 * 5 4 3 8 8 O 1.42907 * 109.47270 * 64.99867 * 5 4 3 9 9 S 1.65598 * 120.00027 * 94.99980 * 3 2 1 10 10 O 1.42104 * 104.27721 * 153.92650 * 9 3 2 11 11 O 1.42102 * 104.27547 * 26.07253 * 9 3 2 12 12 C 1.81402 * 104.44974 * 270.00197 * 9 3 2 13 13 C 1.52995 * 109.46903 * 186.41922 * 12 9 3 14 14 C 1.50703 * 115.55184 * 299.70282 * 13 12 9 15 15 H 1.08005 * 120.00082 * 95.17058 * 14 13 12 16 16 C 1.37873 * 120.00199 * 275.16818 * 14 13 12 17 17 N 1.31516 * 120.00034 * 7.14783 * 16 14 13 18 18 Si 1.86806 * 120.00287 * 187.14589 * 16 14 13 19 19 H 1.48494 * 109.47216 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.46894 * 300.00503 * 18 16 14 21 21 H 1.48504 * 109.46718 * 60.00106 * 18 16 14 22 22 C 1.52999 * 117.50257 * 85.37564 * 13 12 9 23 23 C 1.53001 * 117.50156 * 154.03548 * 13 12 9 24 24 H 1.09003 * 109.47418 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47003 * 299.99930 * 1 2 3 26 26 H 1.09001 * 109.47358 * 59.99982 * 1 2 3 27 27 H 1.09001 * 109.47003 * 240.00070 * 2 1 3 28 28 H 1.09003 * 109.47056 * 120.00463 * 2 1 3 29 29 H 1.08999 * 109.47474 * 34.99809 * 4 3 2 30 30 H 1.08999 * 109.47181 * 155.00176 * 4 3 2 31 31 H 1.08997 * 109.47054 * 60.00396 * 7 5 4 32 32 H 1.09008 * 109.47210 * 179.97438 * 7 5 4 33 33 H 1.08990 * 109.47320 * 300.00135 * 7 5 4 34 34 H 0.96702 * 113.99403 * 59.99739 * 8 5 4 35 35 H 1.09000 * 109.47232 * 66.41723 * 12 9 3 36 36 H 1.09001 * 109.46714 * 306.41572 * 12 9 3 37 37 H 0.96998 * 119.99582 * 355.44011 * 17 16 14 38 38 H 1.08998 * 117.50243 * 215.00448 * 22 13 12 39 39 H 1.09002 * 117.49550 * 0.02562 * 22 13 12 40 40 H 1.09008 * 117.49378 * 359.97191 * 23 13 12 41 41 H 1.09001 * 117.50384 * 144.97276 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.5151 1.7839 -1.8918 6 1 4.3080 2.0003 -1.1757 7 6 3.7140 2.6371 -3.1461 8 8 3.5574 0.3999 -2.2455 9 16 2.4122 2.1202 1.4287 10 8 3.3704 3.1035 1.0621 11 8 2.7577 1.0476 2.2944 12 6 0.8700 2.9055 1.9723 13 6 1.1425 3.7609 3.2112 14 6 1.6790 3.0190 4.4082 15 1 2.7437 2.9768 4.5848 16 6 0.8107 2.3942 5.2780 17 7 -0.4708 2.3242 4.9909 18 14 1.4545 1.6468 6.8644 19 1 0.3283 1.0401 7.6185 20 1 2.4590 0.6003 6.5466 21 1 2.0879 2.7067 7.6895 22 6 1.6364 5.1915 2.9872 23 6 0.2066 4.9424 3.4737 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3617 1.8097 -1.9453 30 1 2.0922 3.1802 -1.0756 31 1 3.6818 3.6927 -2.8764 32 1 4.6809 2.4060 -3.5932 33 1 2.9212 2.4208 -3.8621 34 1 2.8782 0.1355 -2.8810 35 1 0.1369 2.1365 2.2158 36 1 0.4824 3.5369 1.1728 37 1 -0.8157 2.7690 4.2009 38 1 2.3494 5.5961 3.7055 39 1 1.7668 5.5235 1.9572 40 1 -0.6030 5.1106 2.7634 41 1 -0.0214 5.1829 4.5121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451535372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:56 Heat of formation + Delta-G solvation = -110.595890 kcal Electronic energy + Delta-G solvation = -23253.303474 eV Core-core repulsion = 19874.962572 eV Total energy + Delta-G solvation = -3378.340902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.35144 -37.08644 -36.40721 -35.61851 -35.06850 -31.98781 -31.82081 -29.77204 -28.32701 -25.89281 -24.98266 -22.60160 -21.75025 -21.42178 -19.75561 -18.42365 -17.30152 -16.91946 -16.52638 -15.97799 -15.45785 -15.19495 -14.62859 -14.15299 -14.01604 -13.72568 -13.72070 -13.20181 -12.86716 -12.79361 -12.56475 -12.32467 -11.98894 -11.90526 -11.75024 -11.43245 -11.29806 -11.17514 -11.03177 -10.95515 -10.81582 -10.76730 -10.63342 -10.34858 -10.25473 -10.07690 -9.70430 -8.78860 -8.66236 -8.48625 -8.28230 -6.46620 -4.25293 0.97065 3.26972 3.45327 3.50021 3.66497 4.27191 4.48616 4.51785 4.69189 4.80762 4.86143 4.96154 5.05934 5.15998 5.20837 5.30212 5.38003 5.44454 5.50531 5.56245 5.61230 5.67944 5.85999 5.95565 5.97135 6.06965 6.10020 6.15138 6.28579 6.34863 6.39710 6.51418 6.73551 6.86538 7.01582 7.15545 7.57617 8.02616 8.32686 8.76051 9.53933 10.93293 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.005833 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.601751 B = 4798.848630 C = 5182.362889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.111 3.889 3 N -1.004 6.004 4 C 0.096 3.904 5 C 0.082 3.918 6 H 0.108 0.892 7 C -0.183 4.183 8 O -0.556 6.556 9 S 2.615 3.385 10 O -0.971 6.971 11 O -0.941 6.941 12 C -0.568 4.568 13 C 0.022 3.978 14 C -0.593 4.593 15 H 0.061 0.939 16 C 0.041 3.959 17 N -0.897 5.897 18 Si 1.062 2.938 19 H -0.281 1.281 20 H -0.280 1.280 21 H -0.285 1.285 22 C -0.190 4.190 23 C -0.165 4.165 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.367 0.633 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.274 0.726 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 -1.183 -15.300 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.014 4.014 3 N -0.839 5.839 4 C -0.030 4.030 5 C 0.021 3.979 6 H 0.126 0.874 7 C -0.241 4.241 8 O -0.361 6.361 9 S 2.711 3.289 10 O -0.961 6.961 11 O -0.931 6.931 12 C -0.700 4.700 13 C 0.020 3.980 14 C -0.630 4.630 15 H 0.080 0.920 16 C -0.166 4.166 17 N -0.530 5.530 18 Si 0.889 3.111 19 H -0.206 1.206 20 H -0.206 1.206 21 H -0.211 1.211 22 C -0.228 4.228 23 C -0.204 4.204 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.213 0.787 35 H 0.143 0.857 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.808 -2.114 -13.170 13.461 hybrid contribution -0.942 1.234 -1.978 2.514 sum 0.866 -0.880 -15.148 15.198 Atomic orbital electron populations 1.22313 0.96739 1.02350 1.02288 1.21341 0.93338 0.82088 1.04657 1.57869 1.82511 1.22382 1.21102 1.21882 0.97489 0.96974 0.86681 1.22492 0.98383 0.81108 0.95916 0.87412 1.22448 1.02500 1.01172 0.97993 1.86657 1.58142 1.25420 1.65833 1.05002 0.77285 0.74465 0.72106 1.93479 1.57719 1.62618 1.82303 1.93532 1.81940 1.53282 1.64342 1.30207 1.20839 1.11908 1.07088 1.18559 1.01174 0.85875 0.92421 1.21381 0.95170 1.37806 1.08626 0.92047 1.25811 0.94406 0.94396 1.02015 1.70776 1.14060 1.38983 1.29168 0.83654 0.75748 0.76752 0.74965 1.20606 1.20597 1.21140 1.23038 0.97777 1.01777 1.00172 1.22792 0.91641 1.05151 1.00829 0.91479 0.92201 0.92681 0.89831 0.88840 0.90557 0.89550 0.91146 0.91613 0.92387 0.78652 0.85709 0.88445 0.91475 0.89264 0.90723 0.91257 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.55 6.22 -4.04 -0.03 1.52 16 3 N -1.00 -15.54 2.70 -114.38 -0.31 -15.85 16 4 C 0.10 1.17 4.96 -4.04 -0.02 1.15 16 5 C 0.08 0.99 3.83 -26.73 -0.10 0.88 16 6 H 0.11 1.63 7.91 -51.93 -0.41 1.21 16 7 C -0.18 -1.65 9.53 37.16 0.35 -1.30 16 8 O -0.56 -6.48 11.68 -35.23 -0.41 -6.89 16 9 S 2.61 54.31 5.01 -107.50 -0.54 53.77 16 10 O -0.97 -21.34 16.76 -57.54 -0.96 -22.30 16 11 O -0.94 -23.26 16.04 -57.54 -0.92 -24.18 16 12 C -0.57 -11.89 5.98 37.16 0.22 -11.67 16 13 C 0.02 0.54 0.95 -155.66 -0.15 0.39 16 14 C -0.59 -16.54 7.90 -34.44 -0.27 -16.81 16 15 H 0.06 1.77 7.82 -52.48 -0.41 1.36 16 16 C 0.04 1.15 5.39 -17.82 -0.10 1.06 16 17 N -0.90 -25.79 13.57 55.43 0.75 -25.04 16 18 Si 1.06 25.43 29.91 -169.99 -5.08 20.35 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.19 -4.16 9.95 -26.70 -0.27 -4.42 16 23 C -0.17 -3.69 8.74 -26.69 -0.23 -3.92 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.86 7.22 -51.93 -0.37 0.48 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.97 6.57 -51.93 -0.34 0.62 16 28 H 0.09 1.51 6.82 -51.93 -0.35 1.16 16 29 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 30 H 0.09 1.03 7.61 -51.93 -0.40 0.64 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.37 2.68 9.00 45.56 0.41 3.09 16 35 H 0.12 2.69 6.86 -51.92 -0.36 2.33 16 36 H 0.10 1.69 8.11 -51.92 -0.42 1.27 16 37 H 0.27 7.68 6.17 -40.82 -0.25 7.43 16 38 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 39 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 41 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -34.13 346.14 -8.40 -42.52 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.93 Total: 7.32 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: -0.21 Total: -34.93 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.44 Total: -40.88 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -2.30 Total: -53.37 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Atomic # 16 Polarization: 54.31 SS G_CDS: -0.54 Total: 53.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.13 -8.40 -42.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451535372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.073 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds