Wall clock time and date at job start Tue Mar 31 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47145 * 2 1 4 4 O 1.42899 * 109.47133 * 240.00264 * 2 1 3 5 5 C 1.52997 * 109.46960 * 120.00164 * 2 1 3 6 6 C 1.52998 * 109.46919 * 185.00180 * 5 2 1 7 7 H 1.09003 * 109.47306 * 304.99422 * 6 5 2 8 8 C 1.53010 * 109.47204 * 184.99966 * 6 5 2 9 9 N 1.46501 * 109.47433 * 64.99905 * 6 5 2 10 10 S 1.65595 * 120.00337 * 214.99836 * 9 6 5 11 11 O 1.42103 * 104.27780 * 308.93203 * 10 9 6 12 12 O 1.42095 * 104.28055 * 181.07284 * 10 9 6 13 13 C 1.81399 * 104.44774 * 64.99724 * 10 9 6 14 14 C 1.53002 * 109.46977 * 179.49350 * 13 10 9 15 15 C 1.50703 * 115.55090 * 294.62751 * 14 13 10 16 16 H 1.08001 * 119.99532 * 95.19413 * 15 14 13 17 17 C 1.37871 * 120.00317 * 274.91986 * 15 14 13 18 18 N 1.31516 * 119.99925 * 6.40293 * 17 15 14 19 19 Si 1.86803 * 120.00047 * 186.40341 * 17 15 14 20 20 H 1.48507 * 109.46822 * 60.00170 * 19 17 15 21 21 H 1.48499 * 109.47190 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47091 * 300.00221 * 19 17 15 23 23 C 1.52993 * 117.50079 * 80.30304 * 14 13 10 24 24 C 1.53004 * 117.49771 * 148.96451 * 14 13 10 25 25 H 1.08998 * 109.47496 * 300.00027 * 1 2 3 26 26 H 1.09003 * 109.47081 * 60.00241 * 1 2 3 27 27 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 28 28 H 0.96696 * 114.00214 * 299.99638 * 4 2 1 29 29 H 1.08995 * 109.47460 * 64.99916 * 5 2 1 30 30 H 1.08996 * 109.47062 * 305.00040 * 5 2 1 31 31 H 1.08993 * 109.47309 * 179.97438 * 8 6 5 32 32 H 1.09003 * 109.46545 * 299.99922 * 8 6 5 33 33 H 1.08999 * 109.46937 * 59.99407 * 8 6 5 34 34 H 0.96999 * 119.99394 * 35.00068 * 9 6 5 35 35 H 1.09000 * 109.46896 * 59.49775 * 13 10 9 36 36 H 1.08997 * 109.47690 * 299.49290 * 13 10 9 37 37 H 0.97008 * 119.99908 * 185.07869 * 18 17 15 38 38 H 1.08994 * 117.50417 * 215.00354 * 23 14 13 39 39 H 1.09010 * 117.49872 * 0.02562 * 23 14 13 40 40 H 1.08999 * 117.49618 * 359.97019 * 24 14 13 41 41 H 1.08995 * 117.50341 * 144.97384 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7213 1.2492 6 6 3.5647 -0.6133 1.3137 7 1 3.9954 -0.9923 0.3868 8 6 4.0851 -1.4383 2.4925 9 7 3.9479 0.7894 1.4925 10 16 5.3253 1.3689 0.7790 11 8 6.3342 0.4447 1.1626 12 8 5.3849 2.7292 1.1855 13 6 4.9972 1.2503 -1.0012 14 6 6.2063 1.7744 -1.7786 15 6 6.5027 3.2420 -1.6075 16 1 7.2262 3.5647 -0.8734 17 6 5.8546 4.1723 -2.3919 18 7 4.8886 3.7927 -3.1996 19 14 6.3484 5.9719 -2.3074 20 1 7.7763 6.1118 -2.6907 21 1 5.5060 6.7608 -3.2417 22 1 6.1562 6.4734 -0.9230 23 6 7.3963 0.8292 -1.9553 24 6 6.4907 1.1511 -3.1467 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7211 -1.5951 -1.2330 29 1 1.7516 -1.7715 1.2056 30 1 1.6053 -0.2618 2.1369 31 1 5.1714 -1.3618 2.5382 32 1 3.6545 -1.0593 3.4194 33 1 3.8000 -2.4819 2.3595 34 1 3.3947 1.3786 2.0288 35 1 4.1193 1.8468 -1.2493 36 1 4.8166 0.2093 -1.2688 37 1 4.4826 4.4331 -3.8047 38 1 8.3937 1.2688 -1.9476 39 1 7.3177 -0.1662 -1.5180 40 1 5.8167 0.3674 -3.4926 41 1 6.8919 1.8025 -3.9230 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573212029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:40 Heat of formation + Delta-G solvation = -116.570191 kcal Electronic energy + Delta-G solvation = -23118.137920 eV Core-core repulsion = 19739.537954 eV Total energy + Delta-G solvation = -3378.599967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.46374 -36.66533 -36.23696 -35.66137 -34.98096 -31.96176 -31.50606 -29.84661 -28.06290 -26.84002 -25.37103 -22.01688 -21.18640 -21.11569 -19.71824 -18.63843 -17.06099 -16.61825 -16.34468 -15.67969 -15.52394 -14.93624 -14.66938 -14.44274 -14.27043 -13.74616 -13.51426 -13.05594 -12.94479 -12.54060 -12.42848 -11.89612 -11.84628 -11.76020 -11.73901 -11.22966 -11.15994 -11.08124 -10.97967 -10.92167 -10.83819 -10.64180 -10.51153 -10.38746 -10.07913 -9.97526 -9.64922 -9.17349 -8.86376 -8.47052 -8.01321 -6.06329 -4.16287 1.18857 3.37149 3.39004 3.46242 3.50770 4.30225 4.44071 4.59735 4.61789 4.84432 4.92214 5.12557 5.17918 5.21759 5.25434 5.30089 5.38336 5.47734 5.54814 5.67336 5.72999 5.82593 5.91902 5.99722 6.06114 6.13970 6.32733 6.35694 6.38928 6.49711 6.72441 6.78376 7.07890 7.33102 7.36644 7.46250 7.67661 7.87759 8.28347 8.89095 9.54321 11.01634 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.006269 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.404233 B = 4465.145765 C = 4905.558314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.095 3.905 3 H 0.105 0.895 4 O -0.553 6.553 5 C -0.157 4.157 6 C 0.154 3.846 7 H 0.088 0.912 8 C -0.171 4.171 9 N -1.127 6.127 10 S 2.602 3.398 11 O -0.978 6.978 12 O -0.952 6.952 13 C -0.545 4.545 14 C 0.044 3.956 15 C -0.510 4.510 16 H 0.067 0.933 17 C 0.080 3.920 18 N -0.873 5.873 19 Si 0.888 3.112 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.270 1.270 23 C -0.213 4.213 24 C -0.138 4.138 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.368 0.632 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.409 0.591 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.262 0.738 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 -11.054 6.848 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.036 3.964 3 H 0.123 0.877 4 O -0.358 6.358 5 C -0.196 4.196 6 C 0.046 3.954 7 H 0.106 0.894 8 C -0.230 4.230 9 N -0.883 5.883 10 S 2.700 3.300 11 O -0.968 6.968 12 O -0.942 6.942 13 C -0.678 4.678 14 C 0.041 3.959 15 C -0.547 4.547 16 H 0.085 0.915 17 C -0.124 4.124 18 N -0.509 5.509 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.250 4.250 24 C -0.178 4.178 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.215 0.785 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.241 0.759 35 H 0.152 0.848 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.248 -10.199 7.050 14.892 hybrid contribution -0.956 0.485 -0.226 1.096 sum -9.205 -9.714 6.825 15.022 Atomic orbital electron populations 1.22501 0.96666 1.02157 1.02867 1.22003 0.92552 0.97618 0.84251 0.87746 1.86741 1.76835 1.28501 1.43674 1.22652 0.95786 1.01634 0.99526 1.20618 0.94522 0.81249 0.98963 0.89445 1.22339 1.03249 0.99178 0.98274 1.56101 1.46975 1.17673 1.67572 1.05263 0.72914 0.73602 0.78234 1.93485 1.56214 1.65071 1.81994 1.93552 1.84859 1.34397 1.81419 1.29907 1.09812 1.07373 1.20717 1.18295 0.88284 0.93003 0.96303 1.20505 1.24214 0.87993 1.22035 0.91455 1.24929 0.93562 0.98857 0.95093 1.70023 1.22733 1.35406 1.22723 0.86705 0.78650 0.84735 0.78436 1.20015 1.21214 1.19491 1.23223 0.96647 0.99528 1.05613 1.22520 1.01494 1.01477 0.92273 0.91729 0.91650 0.92574 0.78545 0.90550 0.90409 0.90718 0.92503 0.92139 0.75887 0.84825 0.88066 0.92843 0.89629 0.90701 0.91451 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.53 37.16 0.35 -1.28 16 2 C 0.09 1.04 3.53 -26.73 -0.09 0.94 16 3 H 0.10 1.36 7.62 -51.93 -0.40 0.97 16 4 O -0.55 -6.75 12.79 -35.23 -0.45 -7.20 16 5 C -0.16 -1.45 4.49 -26.73 -0.12 -1.57 16 6 C 0.15 1.90 2.63 -67.93 -0.18 1.72 16 7 H 0.09 1.14 6.71 -51.93 -0.35 0.79 16 8 C -0.17 -1.96 9.52 37.16 0.35 -1.61 16 9 N -1.13 -16.77 4.73 -4.89 -0.02 -16.79 16 10 S 2.60 53.43 5.20 -107.50 -0.56 52.87 16 11 O -0.98 -21.52 17.11 -57.54 -0.98 -22.51 16 12 O -0.95 -23.22 17.39 -57.54 -1.00 -24.22 16 13 C -0.54 -11.79 5.81 37.16 0.22 -11.57 16 14 C 0.04 1.09 1.33 -155.66 -0.21 0.88 16 15 C -0.51 -14.28 7.91 -34.44 -0.27 -14.55 16 16 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 17 C 0.08 2.23 5.39 -17.82 -0.10 2.14 16 18 N -0.87 -24.53 12.93 55.43 0.72 -23.81 16 19 Si 0.89 21.76 29.55 -169.99 -5.02 16.74 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 23 C -0.21 -4.79 9.96 -26.70 -0.27 -5.06 16 24 C -0.14 -3.24 9.43 -26.69 -0.25 -3.49 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.37 2.87 9.05 45.56 0.41 3.28 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.04 7.42 -51.93 -0.39 0.65 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.41 5.25 8.80 -34.47 -0.30 4.95 16 35 H 0.13 3.06 8.14 -51.92 -0.42 2.64 16 36 H 0.10 1.93 7.41 -51.93 -0.38 1.54 16 37 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 38 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 39 H 0.07 1.54 8.14 -51.92 -0.42 1.12 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -34.16 351.40 -8.62 -42.77 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.02 Total: 10.31 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: -0.56 Total: -33.45 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.69 Total: -40.60 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -2.44 Total: -53.93 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.56 Total: 52.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.16 -8.62 -42.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573212029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.800 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds