Wall clock time and date at job start Tue Mar 31 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47145 * 2 1 4 4 O 1.42899 * 109.47133 * 240.00264 * 2 1 3 5 5 C 1.52997 * 109.46960 * 120.00164 * 2 1 3 6 6 C 1.52998 * 109.46919 * 185.00180 * 5 2 1 7 7 H 1.09003 * 109.47306 * 304.99422 * 6 5 2 8 8 C 1.53010 * 109.47204 * 184.99966 * 6 5 2 9 9 N 1.46501 * 109.47433 * 64.99905 * 6 5 2 10 10 S 1.65595 * 120.00337 * 214.99836 * 9 6 5 11 11 O 1.42103 * 104.27780 * 308.93203 * 10 9 6 12 12 O 1.42095 * 104.28055 * 181.07284 * 10 9 6 13 13 C 1.81399 * 104.44774 * 64.99724 * 10 9 6 14 14 C 1.53002 * 109.46977 * 179.49350 * 13 10 9 15 15 C 1.50703 * 115.55090 * 294.62751 * 14 13 10 16 16 H 1.08001 * 119.99532 * 95.19413 * 15 14 13 17 17 C 1.37871 * 120.00317 * 274.91986 * 15 14 13 18 18 N 1.31516 * 119.99925 * 6.40293 * 17 15 14 19 19 Si 1.86803 * 120.00047 * 186.40341 * 17 15 14 20 20 H 1.48507 * 109.46822 * 60.00170 * 19 17 15 21 21 H 1.48499 * 109.47190 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47091 * 300.00221 * 19 17 15 23 23 C 1.52993 * 117.50079 * 80.30304 * 14 13 10 24 24 C 1.53004 * 117.49771 * 148.96451 * 14 13 10 25 25 H 1.08998 * 109.47496 * 300.00027 * 1 2 3 26 26 H 1.09003 * 109.47081 * 60.00241 * 1 2 3 27 27 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 28 28 H 0.96696 * 114.00214 * 299.99638 * 4 2 1 29 29 H 1.08995 * 109.47460 * 64.99916 * 5 2 1 30 30 H 1.08996 * 109.47062 * 305.00040 * 5 2 1 31 31 H 1.08993 * 109.47309 * 179.97438 * 8 6 5 32 32 H 1.09003 * 109.46545 * 299.99922 * 8 6 5 33 33 H 1.08999 * 109.46937 * 59.99407 * 8 6 5 34 34 H 0.96999 * 119.99394 * 35.00068 * 9 6 5 35 35 H 1.09000 * 109.46896 * 59.49775 * 13 10 9 36 36 H 1.08997 * 109.47690 * 299.49290 * 13 10 9 37 37 H 0.97008 * 119.99908 * 185.07869 * 18 17 15 38 38 H 1.08994 * 117.50417 * 215.00354 * 23 14 13 39 39 H 1.09010 * 117.49872 * 0.02562 * 23 14 13 40 40 H 1.08999 * 117.49618 * 359.97019 * 24 14 13 41 41 H 1.08995 * 117.50341 * 144.97384 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7213 1.2492 6 6 3.5647 -0.6133 1.3137 7 1 3.9954 -0.9923 0.3868 8 6 4.0851 -1.4383 2.4925 9 7 3.9479 0.7894 1.4925 10 16 5.3253 1.3689 0.7790 11 8 6.3342 0.4447 1.1626 12 8 5.3849 2.7292 1.1855 13 6 4.9972 1.2503 -1.0012 14 6 6.2063 1.7744 -1.7786 15 6 6.5027 3.2420 -1.6075 16 1 7.2262 3.5647 -0.8734 17 6 5.8546 4.1723 -2.3919 18 7 4.8886 3.7927 -3.1996 19 14 6.3484 5.9719 -2.3074 20 1 7.7763 6.1118 -2.6907 21 1 5.5060 6.7608 -3.2417 22 1 6.1562 6.4734 -0.9230 23 6 7.3963 0.8292 -1.9553 24 6 6.4907 1.1511 -3.1467 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7211 -1.5951 -1.2330 29 1 1.7516 -1.7715 1.2056 30 1 1.6053 -0.2618 2.1369 31 1 5.1714 -1.3618 2.5382 32 1 3.6545 -1.0593 3.4194 33 1 3.8000 -2.4819 2.3595 34 1 3.3947 1.3786 2.0288 35 1 4.1193 1.8468 -1.2493 36 1 4.8166 0.2093 -1.2688 37 1 4.4826 4.4331 -3.8047 38 1 8.3937 1.2688 -1.9476 39 1 7.3177 -0.1662 -1.5180 40 1 5.8167 0.3674 -3.4926 41 1 6.8919 1.8025 -3.9230 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573212029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:40 Heat of formation + Delta-G solvation = -143.513343 kcal Electronic energy + Delta-G solvation = -23119.306263 eV Core-core repulsion = 19739.537954 eV Total energy + Delta-G solvation = -3379.768309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.35464 -38.54607 -37.91541 -36.85340 -36.62944 -34.06635 -32.39290 -30.87391 -29.82443 -27.60443 -27.46735 -23.01074 -22.87096 -22.09502 -21.52992 -20.26385 -18.55758 -18.31296 -17.64161 -16.85272 -16.69643 -16.62269 -16.46369 -15.82674 -15.57347 -15.28154 -14.89218 -14.42084 -14.01372 -13.74564 -13.62407 -13.42772 -13.25771 -13.14759 -12.87944 -12.85923 -12.83425 -12.67067 -12.62214 -12.43208 -12.28357 -12.18537 -11.91616 -11.82027 -11.56802 -11.50434 -10.90487 -10.82397 -10.53966 -10.36995 -9.84880 -8.17578 -6.32114 -0.44768 1.38411 1.41487 1.48315 2.06829 2.40972 2.98593 3.09834 3.36977 3.50288 3.54087 3.79808 3.98907 4.05904 4.15107 4.27746 4.39045 4.44835 4.54041 4.55843 4.59530 4.66647 4.78975 4.88529 4.93346 4.96755 5.00167 5.07612 5.22048 5.27506 5.31430 5.45640 5.46333 5.50004 5.58961 5.73319 6.22362 6.24790 6.74095 7.04524 7.39792 8.89697 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.006269 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.404233 B = 4465.145765 C = 4905.558314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 H 0.074 0.926 4 O -0.580 6.580 5 C -0.145 4.145 6 C 0.142 3.858 7 H 0.080 0.920 8 C -0.170 4.170 9 N -1.112 6.112 10 S 2.622 3.378 11 O -0.993 6.993 12 O -0.998 6.998 13 C -0.539 4.539 14 C 0.010 3.990 15 C -0.529 4.529 16 H 0.048 0.952 17 C 0.040 3.960 18 N -0.892 5.892 19 Si 0.934 3.066 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.278 1.278 23 C -0.199 4.199 24 C -0.137 4.137 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.387 0.613 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.420 0.580 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.264 0.736 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.536 -12.758 7.633 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.030 3.970 3 H 0.092 0.908 4 O -0.387 6.387 5 C -0.183 4.183 6 C 0.036 3.964 7 H 0.098 0.902 8 C -0.229 4.229 9 N -0.873 5.873 10 S 2.719 3.281 11 O -0.983 6.983 12 O -0.988 6.988 13 C -0.672 4.672 14 C 0.008 3.992 15 C -0.567 4.567 16 H 0.066 0.934 17 C -0.163 4.163 18 N -0.528 5.528 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.203 1.203 23 C -0.236 4.236 24 C -0.176 4.176 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.236 0.764 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.255 0.745 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.580 -11.913 7.823 17.172 hybrid contribution -0.568 0.932 -0.445 1.179 sum -10.148 -10.981 7.378 16.674 Atomic orbital electron populations 1.22432 0.94984 1.03559 1.02608 1.22000 0.93873 0.96369 0.84741 0.90822 1.86689 1.77431 1.30163 1.44439 1.22593 0.92962 1.03604 0.99189 1.20976 0.96970 0.79244 0.99231 0.90192 1.22329 1.01360 1.00882 0.98349 1.55615 1.45683 1.19273 1.66693 1.04360 0.73685 0.72436 0.77622 1.93460 1.57832 1.65084 1.81942 1.93484 1.86115 1.37252 1.81929 1.29759 1.07578 1.08224 1.21629 1.18439 0.90524 0.92263 0.97949 1.20691 1.24005 0.90220 1.21763 0.93361 1.25527 0.93709 1.02014 0.95044 1.70081 1.23185 1.36372 1.23166 0.85979 0.78944 0.81060 0.78080 1.19212 1.19857 1.20317 1.23267 0.95866 0.99984 1.04487 1.22463 1.02033 1.01478 0.91589 0.90660 0.93285 0.90308 0.76420 0.87274 0.88723 0.93600 0.91199 0.89169 0.74498 0.86560 0.85670 0.92696 0.89788 0.88385 0.89693 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 9.53 71.98 0.69 -2.04 16 2 C 0.09 1.78 3.53 30.59 0.11 1.89 16 3 H 0.07 1.90 7.62 -2.38 -0.02 1.89 16 4 O -0.58 -13.17 12.79 -148.98 -1.91 -15.08 16 5 C -0.14 -2.16 4.49 30.59 0.14 -2.03 16 6 C 0.14 3.17 2.63 44.99 0.12 3.29 16 7 H 0.08 1.92 6.71 -2.39 -0.02 1.90 16 8 C -0.17 -3.41 9.52 71.99 0.69 -2.73 16 9 N -1.11 -31.99 4.73 -169.37 -0.80 -32.79 16 10 S 2.62 108.06 5.20 -56.49 -0.29 107.77 16 11 O -0.99 -43.44 17.11 -127.65 -2.18 -45.63 16 12 O -1.00 -49.84 17.39 -127.65 -2.22 -52.06 16 13 C -0.54 -23.41 5.81 71.98 0.42 -22.99 16 14 C 0.01 0.52 1.33 -52.93 -0.07 0.45 16 15 C -0.53 -30.28 7.91 25.60 0.20 -30.08 16 16 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 17 C 0.04 2.23 5.39 84.65 0.46 2.69 16 18 N -0.89 -50.71 12.93 21.45 0.28 -50.43 16 19 Si 0.93 45.09 29.55 68.60 2.03 47.12 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 23 C -0.20 -8.84 9.96 30.62 0.30 -8.53 16 24 C -0.14 -6.37 9.43 30.62 0.29 -6.09 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.39 5.04 9.05 -74.06 -0.67 4.37 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.20 7.42 -2.39 -0.02 1.18 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.42 10.36 8.80 -96.75 -0.85 9.51 16 35 H 0.12 5.45 8.14 -2.39 -0.02 5.44 16 36 H 0.13 4.67 7.41 -2.39 -0.02 4.65 16 37 H 0.26 14.29 8.32 -92.70 -0.77 13.51 16 38 H 0.08 3.71 8.14 -2.39 -0.02 3.69 16 39 H 0.10 3.86 8.14 -2.38 -0.02 3.84 16 40 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -74.59 351.40 -2.26 -76.85 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.50 Total: 30.42 kcal Atomic # 6 Polarization: -69.51 SS G_CDS: 3.34 Total: -66.17 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -0.52 Total: -83.23 kcal Atomic # 8 Polarization: -106.45 SS G_CDS: -6.31 Total: -112.76 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 108.06 SS G_CDS: -0.29 Total: 107.77 kcal Total: -74.59 -2.26 -76.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573212029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.659 kcal (2) G-P(sol) polarization free energy of solvation -74.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds