Wall clock time and date at job start Tue Mar 31 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53041 * 109.52102 * 120.08050 * 2 1 3 5 5 C 1.53040 * 109.53850 * 58.60547 * 4 2 1 6 6 H 1.09004 * 109.52441 * 301.39484 * 5 4 2 7 7 C 1.52996 * 109.50048 * 181.31536 * 5 4 2 8 8 O 1.42897 * 109.47468 * 175.15713 * 7 5 4 9 9 C 1.53190 * 109.31485 * 61.35981 * 5 4 2 10 10 N 1.46924 * 108.77765 * 305.37047 * 9 5 4 11 11 S 1.65605 * 120.62782 * 233.62999 * 10 9 5 12 12 O 1.42100 * 104.27872 * 26.04714 * 11 10 9 13 13 O 1.42100 * 104.27827 * 153.90386 * 11 10 9 14 14 C 1.81402 * 104.44687 * 269.97657 * 11 10 9 15 15 C 1.52998 * 109.46914 * 180.02562 * 14 11 10 16 16 C 1.50702 * 109.47219 * 179.97438 * 15 14 11 17 17 H 1.08002 * 119.99939 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00256 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99648 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99930 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46954 * 90.00191 * 20 18 16 22 22 H 1.48500 * 109.47026 * 209.99700 * 20 18 16 23 23 H 1.48498 * 109.47197 * 330.00321 * 20 18 16 24 24 C 1.46924 * 118.73885 * 53.60398 * 10 9 5 25 25 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 27 27 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 28 28 H 1.09002 * 109.45665 * 178.62301 * 4 2 1 29 29 H 1.08996 * 109.46303 * 298.58083 * 4 2 1 30 30 H 1.09003 * 109.47219 * 295.16445 * 7 5 4 31 31 H 1.09003 * 109.46698 * 55.15705 * 7 5 4 32 32 H 0.96705 * 113.99809 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.58756 * 185.57703 * 9 5 4 34 34 H 1.09000 * 109.70030 * 65.22620 * 9 5 4 35 35 H 1.09003 * 109.46982 * 299.99646 * 14 11 10 36 36 H 1.09001 * 109.47289 * 60.00070 * 14 11 10 37 37 H 1.09000 * 109.47547 * 299.99683 * 15 14 11 38 38 H 1.09001 * 109.47252 * 59.99843 * 15 14 11 39 39 H 0.96997 * 119.99548 * 180.02562 * 19 18 16 40 40 H 1.09010 * 109.58265 * 186.60491 * 24 10 9 41 41 H 1.08996 * 109.70529 * 66.25383 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7230 1.2482 5 6 1.5043 -2.1559 1.2658 6 1 0.4145 -2.1366 1.2544 7 6 1.9892 -2.8676 2.5304 8 8 1.3970 -4.1660 2.6031 9 6 2.0153 -2.9038 0.0304 10 7 1.6523 -2.1380 -1.1698 11 16 0.8197 -2.8554 -2.4086 12 8 0.1079 -3.9153 -1.7849 13 8 0.1329 -1.7819 -3.0372 14 6 2.1106 -3.5118 -3.5010 15 6 1.4602 -4.2067 -4.6989 16 6 2.5326 -4.7515 -5.6068 17 1 3.5740 -4.6161 -5.3544 18 6 2.1844 -5.4237 -6.7591 19 7 0.9163 -5.5890 -7.0662 20 14 3.5138 -6.0997 -7.8840 21 1 3.8518 -7.4863 -7.4734 22 1 3.0214 -6.1045 -9.2850 23 1 4.7249 -5.2458 -7.7878 24 6 2.0414 -0.7234 -1.2497 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1312 -0.7438 1.2348 29 1 1.6994 -0.1960 2.1389 30 1 3.0745 -2.9644 2.4994 31 1 1.7012 -2.2872 3.4069 32 1 1.6608 -4.6756 3.3816 33 1 1.5571 -3.8918 -0.0141 34 1 3.0991 -3.0058 0.0848 35 1 2.7392 -2.6938 -3.8532 36 1 2.7212 -4.2288 -2.9521 37 1 0.8314 -5.0246 -4.3472 38 1 0.8500 -3.4894 -5.2477 39 1 0.6714 -6.0623 -7.8767 40 1 1.6003 -0.2729 -2.1390 41 1 3.1272 -0.6432 -1.2998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584302572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:48 Heat of formation + Delta-G solvation = -141.451752 kcal Electronic energy + Delta-G solvation = -22585.937181 eV Core-core repulsion = 19206.258268 eV Total energy + Delta-G solvation = -3379.678912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.42177 -36.82132 -36.52754 -35.35887 -33.85623 -33.16725 -32.33510 -31.12137 -27.05846 -25.95585 -25.58846 -24.46654 -21.73099 -21.45707 -19.47700 -18.25237 -17.55300 -17.37941 -16.52291 -16.04893 -15.53935 -15.21495 -14.84938 -14.52837 -14.36317 -14.23136 -13.81461 -13.54787 -13.28511 -13.23494 -12.50395 -12.39377 -11.93069 -11.73345 -11.71511 -11.51819 -11.44561 -11.27785 -11.17465 -11.06180 -10.95593 -10.93097 -10.55481 -10.39624 -10.35169 -10.26432 -10.15073 -9.72089 -9.27555 -8.67405 -8.48301 -6.10298 -4.15812 0.81643 3.08627 3.27448 3.33442 3.36347 3.98724 4.33486 4.41958 4.52923 4.58926 4.71357 4.76761 4.89062 5.05303 5.19000 5.24757 5.26971 5.32139 5.38694 5.47720 5.53369 5.63011 5.68200 5.73319 5.77052 5.85182 5.89959 6.00048 6.03963 6.14056 6.31731 6.39037 6.52851 6.76697 7.32808 7.39092 7.47230 7.82711 8.20147 8.87544 9.48763 11.00824 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.004167 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.531787 B = 6718.424679 C = 7128.737333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 H 0.081 0.919 4 C -0.104 4.104 5 C -0.103 4.103 6 H 0.088 0.912 7 C 0.082 3.918 8 O -0.568 6.568 9 C 0.128 3.872 10 N -1.005 6.005 11 S 2.588 3.412 12 O -0.961 6.961 13 O -0.963 6.963 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.120 3.880 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.377 0.623 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.095 0.905 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 10.076 19.603 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 H 0.099 0.901 4 C -0.142 4.142 5 C -0.123 4.123 6 H 0.106 0.894 7 C 0.004 3.996 8 O -0.373 6.373 9 C 0.002 3.998 10 N -0.841 5.841 11 S 2.687 3.313 12 O -0.952 6.952 13 O -0.954 6.954 14 C -0.724 4.724 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.006 4.006 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.224 0.776 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.428 10.190 18.843 21.694 hybrid contribution 1.676 -0.634 -0.204 1.804 sum 5.104 9.555 18.639 21.558 Atomic orbital electron populations 1.21892 0.94756 1.02515 1.01709 1.21388 0.96768 0.99014 0.94789 0.90081 1.21483 1.00466 0.94342 0.97906 1.21528 1.02551 0.94599 0.93661 0.89384 1.22182 0.96249 0.84061 0.97128 1.86576 1.72748 1.28539 1.49452 1.21365 0.99634 0.95608 0.83158 1.57931 1.75784 1.18548 1.31808 1.05745 0.76848 0.74294 0.74388 1.93542 1.69985 1.57354 1.74290 1.93522 1.71087 1.54107 1.76661 1.30507 1.16630 1.11359 1.13871 1.18962 0.96827 0.95743 0.89594 1.21009 0.92536 1.36261 1.06115 0.92079 1.25071 0.95656 0.95938 0.97817 1.69960 1.15822 1.41491 1.25605 0.86468 0.81597 0.79370 0.79837 1.20455 1.20994 1.19774 1.21464 0.99575 0.80338 0.99198 0.92261 0.92911 0.92001 0.91610 0.91747 0.93552 0.93629 0.77599 0.88122 0.91902 0.86368 0.86354 0.94892 0.94893 0.92539 0.88668 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.71 37.16 0.32 -1.42 16 2 C -0.10 -0.98 3.21 -90.50 -0.29 -1.27 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.10 -0.90 4.71 -26.69 -0.13 -1.03 16 5 C -0.10 -1.12 2.23 -90.50 -0.20 -1.32 16 6 H 0.09 1.13 6.34 -51.93 -0.33 0.80 16 7 C 0.08 0.71 6.43 37.16 0.24 0.95 16 8 O -0.57 -5.87 13.31 -35.23 -0.47 -6.34 16 9 C 0.13 1.64 5.55 -3.71 -0.02 1.62 16 10 N -1.00 -14.30 2.66 -113.53 -0.30 -14.61 16 11 S 2.59 48.91 5.45 -107.50 -0.59 48.32 16 12 O -0.96 -21.00 16.59 -57.54 -0.95 -21.96 16 13 O -0.96 -20.25 16.59 -57.54 -0.95 -21.21 16 14 C -0.59 -11.78 6.12 37.16 0.23 -11.56 16 15 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 16 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.12 1.40 5.83 -3.71 -0.02 1.38 16 25 H 0.06 0.81 5.98 -51.93 -0.31 0.50 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.38 2.04 9.12 45.56 0.42 2.46 16 33 H 0.10 1.51 6.70 -51.93 -0.35 1.16 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 36 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.10 1.20 6.86 -51.92 -0.36 0.85 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -35.80 337.96 -8.84 -44.64 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.97 Total: 1.21 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -0.42 Total: -25.45 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.43 Total: -40.72 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -2.38 Total: -49.50 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 48.91 SS G_CDS: -0.59 Total: 48.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.80 -8.84 -44.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584302572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.807 kcal (2) G-P(sol) polarization free energy of solvation -35.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds