Wall clock time and date at job start Tue Mar 31 2020 02:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53041 * 109.52102 * 120.08050 * 2 1 3 5 5 C 1.53040 * 109.53850 * 58.60547 * 4 2 1 6 6 H 1.09004 * 109.52441 * 301.39484 * 5 4 2 7 7 C 1.52996 * 109.50048 * 181.31536 * 5 4 2 8 8 O 1.42897 * 109.47468 * 175.15713 * 7 5 4 9 9 C 1.53190 * 109.31485 * 61.35981 * 5 4 2 10 10 N 1.46924 * 108.77765 * 305.37047 * 9 5 4 11 11 S 1.65605 * 120.62782 * 233.62999 * 10 9 5 12 12 O 1.42100 * 104.27872 * 26.04714 * 11 10 9 13 13 O 1.42100 * 104.27827 * 153.90386 * 11 10 9 14 14 C 1.81402 * 104.44687 * 269.97657 * 11 10 9 15 15 C 1.52998 * 109.46914 * 180.02562 * 14 11 10 16 16 C 1.50702 * 109.47219 * 179.97438 * 15 14 11 17 17 H 1.08002 * 119.99939 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00256 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99648 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99930 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46954 * 90.00191 * 20 18 16 22 22 H 1.48500 * 109.47026 * 209.99700 * 20 18 16 23 23 H 1.48498 * 109.47197 * 330.00321 * 20 18 16 24 24 C 1.46924 * 118.73885 * 53.60398 * 10 9 5 25 25 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 27 27 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 28 28 H 1.09002 * 109.45665 * 178.62301 * 4 2 1 29 29 H 1.08996 * 109.46303 * 298.58083 * 4 2 1 30 30 H 1.09003 * 109.47219 * 295.16445 * 7 5 4 31 31 H 1.09003 * 109.46698 * 55.15705 * 7 5 4 32 32 H 0.96705 * 113.99809 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.58756 * 185.57703 * 9 5 4 34 34 H 1.09000 * 109.70030 * 65.22620 * 9 5 4 35 35 H 1.09003 * 109.46982 * 299.99646 * 14 11 10 36 36 H 1.09001 * 109.47289 * 60.00070 * 14 11 10 37 37 H 1.09000 * 109.47547 * 299.99683 * 15 14 11 38 38 H 1.09001 * 109.47252 * 59.99843 * 15 14 11 39 39 H 0.96997 * 119.99548 * 180.02562 * 19 18 16 40 40 H 1.09010 * 109.58265 * 186.60491 * 24 10 9 41 41 H 1.08996 * 109.70529 * 66.25383 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7230 1.2482 5 6 1.5043 -2.1559 1.2658 6 1 0.4145 -2.1366 1.2544 7 6 1.9892 -2.8676 2.5304 8 8 1.3970 -4.1660 2.6031 9 6 2.0153 -2.9038 0.0304 10 7 1.6523 -2.1380 -1.1698 11 16 0.8197 -2.8554 -2.4086 12 8 0.1079 -3.9153 -1.7849 13 8 0.1329 -1.7819 -3.0372 14 6 2.1106 -3.5118 -3.5010 15 6 1.4602 -4.2067 -4.6989 16 6 2.5326 -4.7515 -5.6068 17 1 3.5740 -4.6161 -5.3544 18 6 2.1844 -5.4237 -6.7591 19 7 0.9163 -5.5890 -7.0662 20 14 3.5138 -6.0997 -7.8840 21 1 3.8518 -7.4863 -7.4734 22 1 3.0214 -6.1045 -9.2850 23 1 4.7249 -5.2458 -7.7878 24 6 2.0414 -0.7234 -1.2497 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1312 -0.7438 1.2348 29 1 1.6994 -0.1960 2.1389 30 1 3.0745 -2.9644 2.4994 31 1 1.7012 -2.2872 3.4069 32 1 1.6608 -4.6756 3.3816 33 1 1.5571 -3.8918 -0.0141 34 1 3.0991 -3.0058 0.0848 35 1 2.7392 -2.6938 -3.8532 36 1 2.7212 -4.2288 -2.9521 37 1 0.8314 -5.0246 -4.3472 38 1 0.8500 -3.4894 -5.2477 39 1 0.6714 -6.0623 -7.8767 40 1 1.6003 -0.2729 -2.1390 41 1 3.1272 -0.6432 -1.2998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584302572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:47 Heat of formation + Delta-G solvation = -169.925492 kcal Electronic energy + Delta-G solvation = -22587.171895 eV Core-core repulsion = 19206.258268 eV Total energy + Delta-G solvation = -3380.913626 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28265 -38.25591 -37.48029 -37.00354 -35.91698 -34.16448 -33.17165 -33.14518 -27.95969 -27.61959 -26.67827 -25.50893 -23.50689 -22.46286 -20.53535 -19.52546 -19.02968 -18.39614 -18.08100 -17.29199 -17.09389 -16.56092 -16.31309 -15.80080 -15.49862 -15.11201 -15.00720 -14.76487 -14.44248 -14.28887 -14.13324 -13.75392 -13.32703 -13.28736 -13.18814 -13.00771 -12.94245 -12.80170 -12.45757 -12.29065 -12.21160 -12.13032 -12.03216 -11.77335 -11.75285 -11.36318 -11.24589 -11.04638 -10.81052 -10.66666 -9.81642 -8.27550 -6.42536 -0.72244 1.39867 1.42401 1.53614 1.74984 2.37197 2.84973 3.05523 3.16203 3.35815 3.70524 3.87419 3.88814 4.01912 4.05030 4.12391 4.28810 4.40393 4.46653 4.60502 4.68539 4.71268 4.73631 4.75885 4.83934 4.91532 4.98543 5.05524 5.08735 5.22540 5.23139 5.29022 5.31124 5.40794 5.53560 5.65936 5.74508 6.03550 6.70924 7.02188 7.27931 8.85006 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.004167 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.531787 B = 6718.424679 C = 7128.737333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 H 0.113 0.887 4 C -0.097 4.097 5 C -0.106 4.106 6 H 0.058 0.942 7 C 0.083 3.917 8 O -0.600 6.600 9 C 0.120 3.880 10 N -0.993 5.993 11 S 2.606 3.394 12 O -0.998 6.998 13 O -0.991 6.991 14 C -0.587 4.587 15 C 0.021 3.979 16 C -0.540 4.540 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.977 3.023 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.256 1.256 24 C 0.107 3.893 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.396 0.604 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.002 0.998 38 H 0.005 0.995 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 11.376 21.259 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.117 4.117 3 H 0.131 0.869 4 C -0.134 4.134 5 C -0.126 4.126 6 H 0.076 0.924 7 C 0.005 3.995 8 O -0.409 6.409 9 C -0.004 4.004 10 N -0.832 5.832 11 S 2.705 3.295 12 O -0.989 6.989 13 O -0.981 6.981 14 C -0.719 4.719 15 C -0.018 4.018 16 C -0.579 4.579 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.800 3.200 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.180 1.180 24 C -0.017 4.017 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.246 0.754 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.020 0.980 38 H 0.024 0.976 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.729 11.486 20.512 24.453 hybrid contribution 0.601 -1.001 -0.632 1.327 sum 7.330 10.486 19.880 23.641 Atomic orbital electron populations 1.21928 0.96698 1.00624 1.01990 1.21461 0.95103 1.00650 0.94500 0.86940 1.21480 1.01787 0.92351 0.97806 1.21571 1.00941 0.96426 0.93702 0.92365 1.22260 0.97314 0.83451 0.96513 1.86534 1.73588 1.29713 1.51041 1.21599 1.01260 0.94420 0.83150 1.57518 1.75476 1.19685 1.30541 1.04854 0.76657 0.73426 0.74598 1.93489 1.71347 1.59031 1.75004 1.93476 1.72119 1.54665 1.77823 1.30400 1.17274 1.12208 1.12044 1.18818 0.96483 0.94701 0.91816 1.21512 0.93539 1.36230 1.06640 0.90548 1.26166 0.98186 0.96179 0.99755 1.70115 1.18418 1.42551 1.26421 0.85267 0.78611 0.78931 0.77164 1.19530 1.20710 1.17987 1.21857 1.01661 0.78353 0.99851 0.95249 0.90905 0.93483 0.89126 0.89739 0.91290 0.91604 0.75418 0.91129 0.88744 0.83954 0.84401 0.97952 0.97633 0.92333 0.90134 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.71 71.98 0.63 -2.83 16 2 C -0.10 -1.63 3.21 -10.72 -0.03 -1.66 16 3 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.10 -1.27 4.71 30.62 0.14 -1.13 16 5 C -0.11 -2.08 2.23 -10.72 -0.02 -2.11 16 6 H 0.06 1.49 6.34 -2.38 -0.02 1.48 16 7 C 0.08 1.20 6.43 71.98 0.46 1.66 16 8 O -0.60 -11.71 13.31 -148.98 -1.98 -13.69 16 9 C 0.12 2.91 5.55 86.36 0.48 3.39 16 10 N -0.99 -27.44 2.66 -513.09 -1.36 -28.81 16 11 S 2.61 101.91 5.45 -56.49 -0.31 101.60 16 12 O -1.00 -46.14 16.59 -127.65 -2.12 -48.26 16 13 O -0.99 -43.51 16.59 -127.65 -2.12 -45.63 16 14 C -0.59 -23.63 6.12 71.98 0.44 -23.19 16 15 C 0.02 1.13 4.98 29.85 0.15 1.28 16 16 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 17 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 18 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 19 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 20 Si 0.98 43.83 29.54 68.60 2.03 45.85 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 C 0.11 2.26 5.83 86.36 0.50 2.76 16 25 H 0.03 0.82 5.98 -2.39 -0.01 0.80 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.40 3.72 9.12 -74.05 -0.68 3.05 16 33 H 0.07 2.15 6.70 -2.39 -0.02 2.14 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.14 4.95 8.14 -2.39 -0.02 4.94 16 36 H 0.14 4.93 8.14 -2.39 -0.02 4.91 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 40 H 0.08 1.96 6.86 -2.38 -0.02 1.94 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -81.70 337.96 -1.80 -83.50 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.34 Total: 15.45 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 3.44 Total: -52.14 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -1.08 Total: -86.68 kcal Atomic # 8 Polarization: -101.36 SS G_CDS: -6.22 Total: -107.58 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 101.91 SS G_CDS: -0.31 Total: 101.60 kcal Total: -81.70 -1.80 -83.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584302572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.428 kcal (2) G-P(sol) polarization free energy of solvation -81.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds