Wall clock time and date at job start Tue Mar 31 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46790 * 2 1 4 4 C 1.36942 * 120.00104 * 277.53049 * 3 2 1 5 5 H 1.08002 * 119.99675 * 143.86607 * 4 3 2 6 6 C 1.38804 * 119.99787 * 323.87558 * 4 3 2 7 7 N 1.31627 * 120.00175 * 157.80225 * 6 4 3 8 8 Si 1.86806 * 120.00177 * 337.79844 * 6 4 3 9 9 H 1.48499 * 109.46946 * 95.52599 * 8 6 4 10 10 H 1.48502 * 109.47124 * 215.52358 * 8 6 4 11 11 H 1.48498 * 109.46767 * 335.52854 * 8 6 4 12 12 S 1.65608 * 120.00245 * 97.53499 * 3 2 1 13 13 O 1.42097 * 104.27419 * 333.92801 * 12 3 2 14 14 O 1.42101 * 104.27481 * 206.07137 * 12 3 2 15 15 C 1.81398 * 104.44626 * 89.99925 * 12 3 2 16 16 C 1.53004 * 109.46610 * 186.72684 * 15 12 3 17 17 C 1.53000 * 112.84821 * 295.55728 * 16 15 12 18 18 O 1.42896 * 109.47399 * 304.30606 * 17 16 15 19 19 C 1.42898 * 113.99885 * 180.02562 * 18 17 16 20 20 C 1.53779 * 113.61301 * 164.36606 * 16 15 12 21 21 C 1.53949 * 87.02088 * 220.04401 * 20 16 15 22 22 C 1.53780 * 113.61639 * 66.75903 * 16 15 12 23 23 H 1.08998 * 109.47016 * 305.00922 * 1 2 3 24 24 H 1.08996 * 109.46965 * 65.01024 * 1 2 3 25 25 H 1.09003 * 109.46458 * 185.00928 * 1 2 3 26 26 H 1.08996 * 109.47464 * 239.99923 * 2 1 3 27 27 H 1.09002 * 109.47123 * 119.99153 * 2 1 3 28 28 H 0.96998 * 120.00103 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47726 * 66.73002 * 15 12 3 30 30 H 1.09000 * 109.47709 * 306.72351 * 15 12 3 31 31 H 1.08999 * 109.47283 * 64.30997 * 17 16 15 32 32 H 1.09007 * 109.46888 * 184.30492 * 17 16 15 33 33 H 1.08997 * 109.47103 * 299.99843 * 19 18 17 34 34 H 1.09001 * 109.47424 * 59.99842 * 19 18 17 35 35 H 1.09003 * 109.47098 * 179.97438 * 19 18 17 36 36 H 1.09008 * 113.61743 * 334.56810 * 20 16 15 37 37 H 1.09008 * 113.61688 * 105.46790 * 20 16 15 38 38 H 1.08997 * 113.54209 * 270.81170 * 21 20 16 39 39 H 1.09002 * 113.74078 * 139.93986 * 21 20 16 40 40 H 1.09001 * 113.61300 * 254.52561 * 22 16 15 41 41 H 1.09000 * 113.61452 * 25.34586 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1000 2.0786 -1.1757 5 1 1.8813 3.1361 -1.1925 6 6 2.4635 1.4263 -2.3457 7 7 2.1349 1.9371 -3.5135 8 14 3.4193 -0.1766 -2.2632 9 1 2.4762 -1.3203 -2.3506 10 1 4.3795 -0.2392 -3.3942 11 1 4.1619 -0.2445 -0.9790 12 16 2.4716 2.0993 1.4218 13 8 1.7212 1.4142 2.4151 14 8 2.2823 3.4882 1.1888 15 6 4.2373 1.7151 1.5800 16 6 4.7410 2.1851 2.9461 17 6 4.6707 3.7042 3.1148 18 8 5.3924 4.3351 2.0552 19 6 5.3896 5.7626 2.1195 20 6 6.0999 1.5837 3.3419 21 6 5.5351 1.4505 4.7678 22 6 4.1381 1.4055 4.1266 23 1 -0.3633 0.5896 0.8417 24 1 -0.3633 0.4341 -0.9314 25 1 -0.3632 -1.0238 0.0897 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 2.3893 1.4814 -4.3311 29 1 4.7923 2.2256 0.7929 30 1 4.3847 0.6390 1.4890 31 1 3.6293 4.0250 3.0866 32 1 5.1113 3.9842 4.0717 33 1 4.3633 6.1265 2.0708 34 1 5.8454 6.0851 3.0557 35 1 5.9584 6.1652 1.2813 36 1 6.3097 0.6266 2.8641 37 1 6.9285 2.2877 3.2635 38 1 5.7033 2.3318 5.3868 39 1 5.8166 0.5230 5.2665 40 1 3.3850 1.9659 4.6808 41 1 3.8091 0.4003 3.8635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593534607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:31 Heat of formation + Delta-G solvation = -85.912107 kcal Electronic energy + Delta-G solvation = -23571.101685 eV Core-core repulsion = 20193.831153 eV Total energy + Delta-G solvation = -3377.270532 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.62168 -36.87508 -36.31263 -35.74191 -34.57479 -32.29312 -30.19134 -29.51238 -27.35911 -25.72050 -25.17407 -24.50005 -22.43636 -22.29848 -18.50276 -18.14504 -17.04468 -16.62785 -16.28981 -15.90676 -15.56365 -15.49764 -14.94087 -14.38289 -14.31476 -13.85169 -13.37617 -13.12566 -12.88319 -12.57674 -12.53638 -12.47158 -12.12863 -11.78611 -11.53593 -11.33547 -11.14758 -11.08081 -10.96445 -10.81273 -10.75879 -10.57541 -10.49861 -10.30980 -10.15173 -10.04122 -9.93981 -9.46967 -9.20515 -9.00992 -8.11513 -6.65874 -4.08285 1.50933 2.98784 3.14407 3.15128 3.85582 3.93622 4.01800 4.64189 4.68638 4.71771 4.83605 4.98812 5.09302 5.20245 5.36945 5.43107 5.52553 5.61688 5.66348 5.69320 5.73540 5.87389 5.90947 5.92685 5.98314 6.03748 6.04249 6.10800 6.14772 6.30984 6.36765 6.49975 6.63433 6.65510 6.91508 7.10828 7.38127 7.44527 8.27597 8.88794 8.96626 10.41267 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.007052 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.662655 B = 3969.703225 C = 4298.453044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.116 3.884 3 N -0.835 5.835 4 C -0.255 4.255 5 H 0.122 0.878 6 C 0.064 3.936 7 N -0.830 5.830 8 Si 0.880 3.120 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.260 1.260 12 S 2.495 3.505 13 O -0.998 6.998 14 O -0.969 6.969 15 C -0.639 4.639 16 C -0.066 4.066 17 C 0.072 3.928 18 O -0.376 6.376 19 C 0.031 3.969 20 C -0.120 4.120 21 C -0.144 4.144 22 C -0.135 4.135 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.280 0.720 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 -1.726 10.084 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.010 4.010 3 N -0.660 5.660 4 C -0.401 4.401 5 H 0.140 0.860 6 C -0.150 4.150 7 N -0.466 5.466 8 Si 0.708 3.292 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.184 1.184 12 S 2.597 3.403 13 O -0.987 6.987 14 O -0.959 6.959 15 C -0.759 4.759 16 C -0.067 4.067 17 C -0.005 4.005 18 O -0.295 6.295 19 C -0.065 4.065 20 C -0.158 4.158 21 C -0.181 4.181 22 C -0.172 4.172 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.614 -1.338 10.607 12.076 hybrid contribution 1.189 -0.904 -0.271 1.518 sum 6.803 -2.243 10.336 12.575 Atomic orbital electron populations 1.22014 0.95680 1.00645 1.03134 1.21285 0.95425 0.83859 1.00409 1.53840 1.67233 1.21642 1.23282 1.19329 1.41081 0.97157 0.82529 0.86036 1.25764 0.95401 0.98764 0.95104 1.69843 1.39171 1.39621 0.97988 0.86883 0.80510 0.83067 0.78783 1.19559 1.21286 1.18421 1.12298 0.77502 0.75734 0.74804 1.93359 1.69015 1.75077 1.61279 1.93395 1.85150 1.32817 1.84511 1.30937 1.33826 1.08674 1.02478 1.21411 0.98833 0.93045 0.93402 1.22420 0.96642 0.91261 0.90176 1.87879 1.73974 1.18804 1.48812 1.22743 1.01484 0.81271 1.01038 1.22941 0.96211 1.01026 0.95604 1.22909 0.96794 1.01813 0.96617 1.23133 0.96663 1.01526 0.95886 0.92126 0.91551 0.93003 0.92847 0.91522 0.90942 0.85571 0.87457 0.92424 0.92762 0.93366 0.94759 0.89630 0.89934 0.91144 0.90368 0.91302 0.90798 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.18 37.16 0.38 -2.62 16 2 C 0.12 2.44 5.04 -4.04 -0.02 2.42 16 3 N -0.83 -19.75 2.44 -59.91 -0.15 -19.89 16 4 C -0.26 -6.68 9.49 -15.06 -0.14 -6.82 16 5 H 0.12 3.50 7.49 -52.49 -0.39 3.11 16 6 C 0.06 1.63 5.34 -17.43 -0.09 1.54 16 7 N -0.83 -22.02 13.97 55.49 0.78 -21.25 16 8 Si 0.88 19.30 24.96 -169.99 -4.24 15.06 16 9 H -0.27 -5.59 6.71 56.52 0.38 -5.21 16 10 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 12 S 2.49 56.86 4.74 -107.50 -0.51 56.35 16 13 O -1.00 -22.97 15.85 -57.54 -0.91 -23.89 16 14 O -0.97 -24.89 15.56 -57.54 -0.90 -25.79 16 15 C -0.64 -12.50 5.42 37.16 0.20 -12.30 16 16 C -0.07 -1.11 0.69 -153.70 -0.11 -1.22 16 17 C 0.07 1.22 4.81 37.16 0.18 1.40 16 18 O -0.38 -6.76 10.05 -35.23 -0.35 -7.11 16 19 C 0.03 0.45 11.01 101.05 1.11 1.56 16 20 C -0.12 -1.69 7.24 -25.83 -0.19 -1.88 16 21 C -0.14 -1.77 7.74 -25.83 -0.20 -1.97 16 22 C -0.13 -2.04 5.99 -25.92 -0.16 -2.20 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 1.12 2.78 -51.93 -0.14 0.97 16 27 H 0.07 1.24 7.52 -51.93 -0.39 0.85 16 28 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.13 2.60 7.68 -51.93 -0.40 2.20 16 30 H 0.11 1.93 8.09 -51.92 -0.42 1.51 16 31 H 0.06 1.06 6.63 -51.93 -0.34 0.72 16 32 H 0.05 0.75 7.31 -51.93 -0.38 0.37 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.12 8.06 -51.92 -0.42 0.70 16 37 H 0.07 0.96 8.10 -51.92 -0.42 0.54 16 38 H 0.08 0.86 7.61 -51.93 -0.40 0.46 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 41 H 0.10 1.46 8.10 -51.93 -0.42 1.04 16 LS Contribution 334.20 15.07 5.04 5.04 Total: -1.00 -29.78 334.20 -6.95 -36.73 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.66 Total: 6.84 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 0.97 Total: -22.09 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.63 Total: -41.14 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -2.16 Total: -56.79 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.24 Total: 15.06 kcal Atomic # 16 Polarization: 56.86 SS G_CDS: -0.51 Total: 56.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.78 -6.95 -36.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593534607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.182 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds