Wall clock time and date at job start Tue Mar 31 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99630 * 2 1 4 4 H 1.09000 * 109.46895 * 179.03737 * 3 2 1 5 5 C 1.53002 * 109.47101 * 299.03657 * 3 2 1 6 6 S 1.81400 * 109.47007 * 300.00286 * 5 3 2 7 7 O 1.42102 * 110.54528 * 68.37711 * 6 5 3 8 8 O 1.42102 * 110.54362 * 291.62189 * 6 5 3 9 9 N 1.65607 * 104.44992 * 180.02562 * 6 5 3 10 10 C 1.46499 * 119.99821 * 89.99612 * 9 6 5 11 11 C 1.36934 * 119.99769 * 269.72269 * 9 6 5 12 12 H 1.08006 * 120.00113 * 24.94684 * 11 9 6 13 13 C 1.38811 * 119.99874 * 204.93652 * 11 9 6 14 14 N 1.31617 * 119.99978 * 12.50551 * 13 11 9 15 15 Si 1.86802 * 119.99835 * 192.49626 * 13 11 9 16 16 H 1.48496 * 109.47407 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46607 * 120.00480 * 15 13 11 18 18 H 1.48493 * 109.47236 * 240.00276 * 15 13 11 19 19 C 1.52994 * 109.47366 * 59.03506 * 3 2 1 20 20 C 1.54262 * 110.03497 * 171.64040 * 19 3 2 21 21 C 1.54966 * 104.16681 * 217.14005 * 20 19 3 22 22 C 1.54895 * 102.77353 * 37.88796 * 21 20 19 23 23 C 1.53877 * 110.02960 * 54.42908 * 19 3 2 24 24 H 1.08999 * 109.47334 * 304.77207 * 1 2 3 25 25 H 1.09002 * 109.46928 * 64.78032 * 1 2 3 26 26 H 1.09010 * 109.46838 * 184.77678 * 1 2 3 27 27 H 1.08999 * 109.46967 * 180.02562 * 5 3 2 28 28 H 1.09000 * 109.47180 * 60.00255 * 5 3 2 29 29 H 1.09004 * 109.46650 * 88.43731 * 10 9 6 30 30 H 1.08996 * 109.46712 * 208.42844 * 10 9 6 31 31 H 1.08992 * 109.47530 * 328.43464 * 10 9 6 32 32 H 0.97003 * 120.00110 * 179.97438 * 14 13 11 33 33 H 1.08999 * 110.02026 * 293.03790 * 19 3 2 34 34 H 1.09010 * 110.48487 * 335.78913 * 20 19 3 35 35 H 1.08998 * 110.48518 * 98.42535 * 20 19 3 36 36 H 1.08997 * 110.71583 * 279.57926 * 21 20 19 37 37 H 1.08996 * 110.92167 * 156.29408 * 21 20 19 38 38 H 1.08994 * 110.48336 * 203.40884 * 22 21 20 39 39 H 1.09000 * 110.59894 * 80.81827 * 22 21 20 40 40 H 1.08999 * 110.03257 * 238.56772 * 23 19 3 41 41 H 1.09000 * 110.03290 * 359.95064 * 23 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 3.0966 1.2195 0.0173 5 6 1.5779 2.0561 -1.2612 6 16 2.1358 1.1458 -2.7277 7 8 1.4263 -0.0789 -2.8543 8 8 3.5526 1.1857 -2.8303 9 7 1.6087 2.0578 -4.0056 10 6 2.4661 3.1094 -4.5581 11 6 0.3736 1.8253 -4.5493 12 1 -0.4027 1.3706 -3.9516 13 6 0.1192 2.1742 -5.8685 14 7 1.1142 2.4957 -6.6678 15 14 -1.6354 2.1871 -6.5095 16 1 -2.5633 1.7904 -5.4201 17 1 -1.9803 3.5527 -6.9802 18 1 -1.7574 1.2291 -7.6375 19 6 1.5396 2.0733 1.2368 20 6 2.3166 3.4000 1.3626 21 6 2.5273 3.5729 2.8881 22 6 2.7969 2.1235 3.3631 23 6 1.8445 1.2620 2.5084 24 1 -0.3634 0.5861 0.8441 25 1 -0.3633 0.4379 -0.9297 26 1 -0.3633 -1.0242 0.0856 27 1 2.0216 3.0518 -1.2614 28 1 0.4915 2.1421 -1.2785 29 1 3.1091 2.6857 -5.3296 30 1 1.8456 3.8932 -4.9923 31 1 3.0815 3.5313 -3.7636 32 1 0.9365 2.7391 -7.5898 33 1 0.4701 2.2719 1.1682 34 1 3.2764 3.3300 0.8506 35 1 1.7287 4.2257 0.9619 36 1 1.6291 3.9728 3.3585 37 1 3.3861 4.2124 3.0923 38 1 2.5596 2.0186 4.4217 39 1 3.8341 1.8453 3.1762 40 1 0.9230 1.0677 3.0572 41 1 2.3269 0.3209 2.2441 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594719623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:40 Heat of formation + Delta-G solvation = -117.995867 kcal Electronic energy + Delta-G solvation = -23068.029083 eV Core-core repulsion = 19689.367295 eV Total energy + Delta-G solvation = -3378.661789 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.57740 -36.85134 -36.02535 -35.40881 -34.78013 -31.77140 -31.09821 -28.82902 -27.93740 -26.92740 -26.20562 -23.45190 -22.35257 -20.79500 -19.62866 -18.39780 -17.19581 -16.81466 -16.43069 -16.15254 -15.63561 -15.37639 -14.83450 -14.54754 -14.25112 -14.04435 -13.51108 -13.29235 -13.15750 -12.55249 -12.39583 -11.79550 -11.73435 -11.70767 -11.37392 -11.22538 -11.20854 -11.13818 -11.06331 -11.03994 -10.93620 -10.89092 -10.69576 -10.52737 -10.41729 -10.29346 -10.03376 -9.89847 -9.45931 -8.97242 -7.83190 -6.09318 -3.80066 1.26491 3.24244 3.32148 3.34879 3.79393 3.98509 4.37064 4.45310 4.52318 4.54925 4.78484 4.89009 4.96998 5.13154 5.23752 5.29818 5.33711 5.40990 5.48357 5.55851 5.57605 5.64264 5.67130 5.77151 5.80400 5.83497 5.96909 5.98483 6.10013 6.15276 6.19356 6.29850 6.31288 6.91642 7.20358 7.22878 7.53970 7.71453 8.52469 9.10070 9.46220 10.96305 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.004907 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.204354 B = 5704.347624 C = 5860.106933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.374 6.374 3 C 0.110 3.890 4 H 0.112 0.888 5 C -0.684 4.684 6 S 2.604 3.396 7 O -0.946 6.946 8 O -0.983 6.983 9 N -0.860 5.860 10 C 0.138 3.862 11 C -0.314 4.314 12 H 0.094 0.906 13 C 0.038 3.962 14 N -0.886 5.886 15 Si 0.914 3.086 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.119 4.119 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.018 0.982 32 H 0.262 0.738 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 3.016 16.765 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.051 3.949 4 H 0.129 0.871 5 C -0.808 4.808 6 S 2.694 3.306 7 O -0.936 6.936 8 O -0.973 6.973 9 N -0.694 5.694 10 C -0.009 4.009 11 C -0.444 4.444 12 H 0.112 0.888 13 C -0.166 4.166 14 N -0.526 5.526 15 Si 0.742 3.258 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.134 4.134 20 C -0.158 4.158 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.157 4.157 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.589 2.105 16.559 16.703 hybrid contribution -1.521 1.047 -0.269 1.866 sum -0.932 3.152 16.290 16.619 Atomic orbital electron populations 1.22850 0.80955 1.03017 1.00414 1.88040 1.20553 1.25999 1.94626 1.21975 0.98553 0.82962 0.91442 0.87066 1.31585 1.13385 1.15485 1.20370 1.04853 0.74096 0.75472 0.76131 1.93501 1.74403 1.40952 1.84780 1.93488 1.30159 1.87469 1.86158 1.52779 1.25923 1.47580 1.43086 1.21026 0.93014 0.91049 0.95796 1.19074 0.87414 1.42210 0.95721 0.88831 1.25137 0.98269 0.97871 0.95352 1.70077 1.29983 1.46810 1.05748 0.86079 0.83087 0.77612 0.79038 1.19558 1.20961 1.20859 1.22327 1.00870 0.95544 0.94660 1.22427 1.00519 0.96477 0.96422 1.22501 1.01269 0.96799 0.95626 1.22381 0.99803 0.95035 0.99104 1.22165 0.99553 0.99185 0.94805 0.93973 0.92966 0.89389 0.85027 0.85126 0.92853 0.91399 0.96389 0.92753 0.90369 0.90999 0.91316 0.91696 0.91599 0.91930 0.91533 0.91992 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.06 101.05 1.02 1.35 16 2 O -0.37 -6.09 8.89 -41.98 -0.37 -6.46 16 3 C 0.11 1.62 2.08 -26.73 -0.06 1.56 16 4 H 0.11 1.60 7.99 -51.93 -0.41 1.19 16 5 C -0.68 -11.07 5.19 37.16 0.19 -10.88 16 6 S 2.60 57.96 5.14 -107.50 -0.55 57.41 16 7 O -0.95 -23.71 16.14 -61.89 -1.00 -24.71 16 8 O -0.98 -23.72 17.12 -57.54 -0.98 -24.70 16 9 N -0.86 -21.38 3.23 -66.69 -0.22 -21.59 16 10 C 0.14 3.27 8.43 59.85 0.50 3.77 16 11 C -0.31 -8.36 9.03 -15.06 -0.14 -8.49 16 12 H 0.09 2.39 7.71 -52.48 -0.40 1.99 16 13 C 0.04 1.02 5.06 -17.43 -0.09 0.93 16 14 N -0.89 -24.69 10.83 55.49 0.60 -24.09 16 15 Si 0.91 20.68 29.57 -169.99 -5.03 15.66 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 C -0.11 -1.33 1.86 -89.51 -0.17 -1.50 16 20 C -0.12 -1.27 5.57 -25.03 -0.14 -1.40 16 21 C -0.12 -1.11 6.91 -24.69 -0.17 -1.28 16 22 C -0.13 -1.14 6.83 -25.07 -0.17 -1.31 16 23 C -0.12 -1.25 6.10 -25.61 -0.16 -1.41 16 24 H 0.04 0.48 6.27 -51.93 -0.33 0.16 16 25 H 0.05 0.80 6.51 -51.93 -0.34 0.47 16 26 H 0.09 1.13 8.14 -51.92 -0.42 0.70 16 27 H 0.13 1.85 7.53 -51.92 -0.39 1.46 16 28 H 0.13 1.99 6.67 -51.92 -0.35 1.65 16 29 H 0.05 1.37 7.67 -51.93 -0.40 0.97 16 30 H 0.07 1.63 7.01 -51.93 -0.36 1.27 16 31 H 0.02 0.36 7.85 -51.93 -0.41 -0.05 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.08 0.89 6.85 -51.93 -0.36 0.53 16 34 H 0.07 0.77 7.75 -51.92 -0.40 0.36 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.87 7.23 -51.93 -0.38 0.50 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -32.39 331.70 -8.54 -40.93 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.62 Total: 1.22 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 0.63 Total: -18.66 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.39 Total: -45.68 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -2.36 Total: -55.87 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: 57.96 SS G_CDS: -0.55 Total: 57.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.39 -8.54 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594719623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.063 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds