Wall clock time and date at job start Tue Mar 31 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00150 * 2 1 4 4 H 1.09007 * 109.46955 * 30.00148 * 3 2 1 5 5 C 1.52995 * 109.47354 * 270.00027 * 3 2 1 6 6 C 1.53006 * 109.47190 * 149.99535 * 3 2 1 7 7 S 1.81400 * 109.47086 * 300.00484 * 6 3 2 8 8 O 1.42101 * 110.54369 * 68.37677 * 7 6 3 9 9 O 1.42094 * 110.54239 * 291.61856 * 7 6 3 10 10 N 1.65606 * 104.44550 * 179.97438 * 7 6 3 11 11 C 1.46923 * 120.62502 * 90.00066 * 10 7 6 12 12 C 1.53200 * 108.77396 * 126.37151 * 11 10 7 13 13 C 1.53032 * 109.31308 * 54.63041 * 12 11 10 14 14 C 1.53042 * 109.52860 * 298.64080 * 13 12 11 15 15 H 1.09005 * 109.49908 * 301.41133 * 14 13 12 16 16 C 1.50699 * 109.50123 * 181.30928 * 14 13 12 17 17 H 1.08003 * 120.00150 * 275.05930 * 16 14 13 18 18 C 1.37883 * 119.99880 * 95.05517 * 16 14 13 19 19 N 1.31510 * 120.00233 * 186.20795 * 18 16 14 20 20 Si 1.86804 * 119.99879 * 6.20553 * 18 16 14 21 21 H 1.48493 * 109.47051 * 84.76730 * 20 18 16 22 22 H 1.48496 * 109.46991 * 204.77303 * 20 18 16 23 23 H 1.48500 * 109.47118 * 324.76956 * 20 18 16 24 24 C 1.46918 * 120.63321 * 269.97598 * 10 7 6 25 25 H 1.08994 * 109.47432 * 300.00118 * 1 2 3 26 26 H 1.09003 * 109.46721 * 59.99812 * 1 2 3 27 27 H 1.08994 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47240 * 180.02562 * 5 3 2 29 29 H 1.08999 * 109.47227 * 299.99661 * 5 3 2 30 30 H 1.09001 * 109.47370 * 60.00083 * 5 3 2 31 31 H 1.08990 * 109.47121 * 180.02562 * 6 3 2 32 32 H 1.09001 * 109.46446 * 60.00038 * 6 3 2 33 33 H 1.09000 * 109.59161 * 6.58082 * 11 10 7 34 34 H 1.09005 * 109.70578 * 246.22165 * 11 10 7 35 35 H 1.09000 * 109.49181 * 294.67464 * 12 11 10 36 36 H 1.09001 * 109.52091 * 174.59960 * 12 11 10 37 37 H 1.08994 * 109.46275 * 58.65828 * 13 12 11 38 38 H 1.09002 * 109.45935 * 178.63303 * 13 12 11 39 39 H 0.96991 * 120.00180 * 180.02562 * 19 18 16 40 40 H 1.09008 * 109.58360 * 353.42017 * 24 10 7 41 41 H 1.08995 * 109.58951 * 113.70243 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3590 1.2632 0.7214 7 16 3.1129 0.7108 2.4316 8 8 2.7176 -0.6538 2.4628 9 8 2.4092 1.6947 3.1771 10 7 4.6332 0.7100 3.0883 11 6 5.1631 1.9099 3.7502 12 6 5.6352 1.5291 5.1570 13 6 6.6323 0.3722 5.0605 14 6 5.9455 -0.8442 4.4353 15 1 5.0861 -1.1289 5.0425 16 6 6.9187 -1.9930 4.3700 17 1 7.5993 -2.0775 3.5357 18 6 6.9403 -2.9362 5.3756 19 7 7.8679 -3.8684 5.3829 20 14 5.6520 -2.8899 6.7275 21 1 4.4314 -3.6028 6.2726 22 1 6.1873 -3.5516 7.9443 23 1 5.3131 -1.4783 7.0401 24 6 5.4773 -0.4905 3.0205 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.6615 2.7670 -1.4424 29 1 2.8830 1.0775 -1.9563 30 1 1.2569 1.8015 -1.9563 31 1 3.8021 2.2590 0.7218 32 1 4.0242 0.5693 0.2075 33 1 4.3802 2.6651 3.8194 34 1 6.0024 2.3051 3.1777 35 1 4.7787 1.2222 5.7574 36 1 6.1179 2.3875 5.6240 37 1 7.4767 0.6714 4.4396 38 1 6.9881 0.1153 6.0582 39 1 7.8828 -4.5322 6.0900 40 1 4.9016 -1.3192 2.6082 41 1 6.3413 -0.2944 2.3857 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:24 Heat of formation + Delta-G solvation = -124.095019 kcal Electronic energy + Delta-G solvation = -22860.380594 eV Core-core repulsion = 19481.454326 eV Total energy + Delta-G solvation = -3378.926268 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.68486 -37.89368 -36.86796 -35.60800 -33.20034 -33.12178 -31.52351 -30.47715 -28.06176 -26.75885 -25.19166 -23.87169 -21.92866 -21.57100 -19.47044 -18.44484 -17.50618 -17.22094 -16.67054 -16.58760 -15.66366 -15.45290 -14.93418 -14.42218 -14.15071 -13.73542 -13.53480 -13.26858 -13.02022 -12.94707 -12.74510 -12.67910 -12.63189 -12.49094 -11.90520 -11.78890 -11.76650 -11.41129 -11.21650 -11.16799 -10.97937 -10.69979 -10.67973 -10.29634 -9.96403 -9.93996 -9.70787 -9.54405 -9.00650 -8.52177 -8.34681 -6.07328 -4.06541 0.44427 2.92400 3.34678 3.35666 3.42563 3.46867 4.00940 4.27605 4.40640 4.46163 4.58890 4.78702 5.03447 5.06990 5.10284 5.16092 5.26155 5.31349 5.34409 5.47661 5.52477 5.60469 5.64023 5.81500 5.84107 5.98540 6.13959 6.29925 6.44227 6.49356 6.60656 6.77780 6.83004 6.94334 7.07319 7.31149 7.46522 7.79046 8.50402 8.96777 9.56718 11.05477 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.005073 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.887741 B = 5517.780874 C = 5898.464804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.094 3.906 4 H 0.074 0.926 5 C -0.165 4.165 6 C -0.639 4.639 7 S 2.603 3.397 8 O -0.933 6.933 9 O -0.967 6.967 10 N -0.998 5.998 11 C 0.122 3.878 12 C -0.135 4.135 13 C -0.109 4.109 14 C 0.007 3.993 15 H 0.036 0.964 16 C -0.512 4.512 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.898 5.898 20 Si 0.872 3.128 21 H -0.273 1.273 22 H -0.290 1.290 23 H -0.264 1.264 24 C 0.128 3.872 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.264 0.736 40 H 0.088 0.912 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.774 14.214 -10.894 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.298 6.298 3 C 0.034 3.966 4 H 0.091 0.909 5 C -0.224 4.224 6 C -0.766 4.766 7 S 2.696 3.304 8 O -0.923 6.923 9 O -0.958 6.958 10 N -0.837 5.837 11 C -0.004 4.004 12 C -0.174 4.174 13 C -0.147 4.147 14 C -0.014 4.014 15 H 0.055 0.945 16 C -0.551 4.551 17 H 0.093 0.907 18 C -0.127 4.127 19 N -0.535 5.535 20 Si 0.699 3.301 21 H -0.199 1.199 22 H -0.216 1.216 23 H -0.188 1.188 24 C 0.004 3.996 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.387 13.646 -10.385 20.585 hybrid contribution -0.262 0.379 0.184 0.496 sum -11.649 14.024 -10.201 20.891 Atomic orbital electron populations 1.22920 0.80335 1.03749 1.00109 1.88087 1.20370 1.26234 1.95071 1.21698 0.91696 0.85947 0.97237 0.90851 1.22211 1.02753 1.01979 0.95421 1.30897 1.05131 1.13594 1.26980 1.05205 0.73784 0.74877 0.76511 1.93614 1.80243 1.32419 1.86003 1.93540 1.71445 1.63173 1.67619 1.57835 1.35504 1.20779 1.69619 1.21381 0.98726 0.85996 0.94255 1.21963 1.00402 0.99572 0.95501 1.21783 0.97096 0.94736 1.01082 1.19424 0.96131 0.94181 0.91635 0.94542 1.20886 1.18635 1.06785 1.08788 0.90666 1.25014 0.95192 0.95041 0.97431 1.69898 1.33081 1.16573 1.33999 0.86928 0.82567 0.78853 0.81702 1.19866 1.21624 1.18843 1.21845 0.93150 0.83660 1.00915 0.93652 0.93675 0.88704 0.91222 0.91133 0.91918 0.84237 0.84003 0.90093 0.91897 0.92204 0.91985 0.92681 0.92679 0.92603 0.89402 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -5.03 9.39 -41.98 -0.39 -5.42 16 3 C 0.09 1.03 2.77 -26.73 -0.07 0.96 16 4 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 5 C -0.17 -1.38 9.53 37.16 0.35 -1.02 16 6 C -0.64 -7.24 5.90 37.16 0.22 -7.02 16 7 S 2.60 42.32 5.25 -107.50 -0.56 41.75 16 8 O -0.93 -18.83 15.92 -61.89 -0.99 -19.82 16 9 O -0.97 -17.09 16.59 -57.54 -0.95 -18.04 16 10 N -1.00 -16.89 3.22 -113.54 -0.37 -17.25 16 11 C 0.12 1.81 6.43 -3.71 -0.02 1.78 16 12 C -0.14 -2.27 6.08 -26.61 -0.16 -2.43 16 13 C -0.11 -2.21 5.15 -26.69 -0.14 -2.34 16 14 C 0.01 0.16 1.93 -91.66 -0.18 -0.01 16 15 H 0.04 0.91 5.25 -51.93 -0.27 0.63 16 16 C -0.51 -14.03 8.86 -34.44 -0.31 -14.34 16 17 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 20 Si 0.87 22.06 27.03 -169.99 -4.59 17.47 16 21 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.26 -6.41 6.77 56.52 0.38 -6.03 16 24 C 0.13 2.53 5.69 -3.73 -0.02 2.51 16 25 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.04 0.33 7.87 -51.93 -0.41 -0.07 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 31 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.14 1.52 8.14 -51.92 -0.42 1.09 16 33 H 0.08 1.08 6.86 -51.93 -0.36 0.72 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.09 1.81 6.86 -51.92 -0.36 1.46 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -34.35 337.47 -8.18 -42.53 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.85 Total: -1.34 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 0.67 Total: -18.52 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.41 Total: -43.70 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -2.33 Total: -43.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.59 Total: 17.47 kcal Atomic # 16 Polarization: 42.32 SS G_CDS: -0.56 Total: 41.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.35 -8.18 -42.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.566 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds