Wall clock time and date at job start Tue Mar 31 2020 02:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.45463 * 2 1 4 4 C 1.53045 * 109.45440 * 240.03718 * 2 1 3 5 5 C 1.53189 * 109.31267 * 301.34303 * 4 2 1 6 6 N 1.46923 * 108.77751 * 305.36979 * 5 4 2 7 7 S 1.65606 * 120.62889 * 233.58517 * 6 5 4 8 8 O 1.42094 * 104.27817 * 333.92814 * 7 6 5 9 9 O 1.42106 * 104.27580 * 206.07045 * 7 6 5 10 10 C 1.81396 * 104.45103 * 90.00030 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 90.00289 * 16 14 12 18 18 H 1.48505 * 109.47195 * 210.00171 * 16 14 12 19 19 H 1.48493 * 109.47449 * 330.00136 * 16 14 12 20 20 C 1.46931 * 118.74107 * 53.86074 * 6 5 4 21 21 C 1.53037 * 109.46143 * 119.97255 * 2 1 3 22 22 H 1.09000 * 109.49856 * 178.60492 * 21 2 1 23 23 C 1.53004 * 109.49348 * 298.66849 * 21 2 1 24 24 O 1.42905 * 109.46815 * 184.99874 * 23 21 2 25 25 H 1.09000 * 109.47578 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46768 * 299.96909 * 1 2 3 27 27 H 1.09004 * 109.47256 * 59.95935 * 1 2 3 28 28 H 1.09005 * 109.49426 * 181.39854 * 4 2 1 29 29 H 1.08992 * 109.49752 * 61.30124 * 4 2 1 30 30 H 1.08999 * 109.58666 * 185.58022 * 5 4 2 31 31 H 1.08997 * 109.70153 * 65.22728 * 5 4 2 32 32 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 33 33 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 34 34 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 35 35 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.58474 * 65.92316 * 20 6 5 38 38 H 1.08997 * 109.58648 * 186.35716 * 20 6 5 39 39 H 1.09000 * 109.47228 * 304.99393 * 23 21 2 40 40 H 1.08998 * 109.47643 * 64.99785 * 23 21 2 41 41 H 0.96701 * 114.00045 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0397 -0.7207 -1.2502 5 6 1.4994 -2.1541 -1.2644 6 7 1.8623 -2.8089 -0.0002 7 16 2.6647 -4.2575 -0.0003 8 8 2.3049 -4.8574 -1.2371 9 8 2.3053 -4.8573 1.2368 10 6 4.4207 -3.8024 -0.0007 11 6 5.2763 -5.0708 -0.0002 12 6 6.7351 -4.6926 -0.0011 13 1 7.0232 -3.6518 -0.0016 14 6 7.7021 -5.6756 -0.0003 15 7 7.3513 -6.9430 0.0007 16 14 9.5103 -5.2068 -0.0008 17 1 9.9895 -5.0815 1.3992 18 1 10.2937 -6.2569 -0.7000 19 1 9.6852 -3.9095 -0.7018 20 6 1.4945 -2.1570 1.2642 21 6 2.0399 -0.7209 1.2500 22 1 3.1296 -0.7429 1.2382 23 6 1.5575 0.0197 2.4989 24 8 2.1287 -0.5845 3.6612 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5134 0.8903 27 1 -0.3634 0.5145 -0.8896 28 1 3.1295 -0.7429 -1.2384 29 1 1.6957 -0.1933 -2.1398 30 1 1.9379 -2.7017 -2.0986 31 1 0.4145 -2.1368 -1.3687 32 1 4.6436 -3.2138 0.8892 33 1 4.6432 -3.2138 -0.8907 34 1 5.0534 -5.6598 -0.8899 35 1 5.0536 -5.6589 0.8901 36 1 8.0315 -7.6345 0.0009 37 1 0.4092 -2.1377 1.3630 38 1 1.9299 -2.7064 2.0988 39 1 1.8654 1.0639 2.4438 40 1 0.4706 -0.0360 2.5574 41 1 1.8660 -0.1650 4.4920 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598623689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:14 Heat of formation + Delta-G solvation = -140.181174 kcal Electronic energy + Delta-G solvation = -22700.742535 eV Core-core repulsion = 19321.118719 eV Total energy + Delta-G solvation = -3379.623816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.63078 -36.73143 -36.52994 -35.38625 -33.85423 -33.57176 -31.62524 -31.10981 -27.84099 -25.87800 -25.57230 -24.07344 -22.10573 -21.49625 -19.15609 -18.20004 -17.52075 -17.45902 -16.50272 -16.14834 -15.43385 -15.33397 -14.90856 -14.52363 -14.45597 -14.24227 -14.12964 -13.64956 -13.31173 -12.87315 -12.50147 -12.25224 -12.16243 -11.93847 -11.71405 -11.52408 -11.41521 -11.28743 -11.21002 -11.09569 -11.05041 -10.92373 -10.59098 -10.42336 -10.34301 -10.32122 -10.09204 -9.69364 -9.24347 -8.65886 -8.47050 -6.09082 -4.14339 0.82602 3.07471 3.28416 3.34327 3.37200 3.97902 4.33300 4.41726 4.47758 4.59775 4.69085 4.74633 4.89140 5.01300 5.10711 5.20829 5.26086 5.31414 5.36976 5.38779 5.46809 5.54750 5.66549 5.70670 5.75793 5.79132 5.83253 5.93223 6.02919 6.08324 6.23322 6.32000 6.55428 6.74390 7.34345 7.40710 7.47377 7.84085 8.21672 8.88979 9.50124 11.02060 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.004646 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.462629 B = 6025.424178 C = 6463.113916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.131 4.131 5 C 0.119 3.881 6 N -1.006 6.006 7 S 2.590 3.410 8 O -0.966 6.966 9 O -0.963 6.963 10 C -0.589 4.589 11 C 0.028 3.972 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.131 3.869 21 C -0.102 4.102 22 H 0.086 0.914 23 C 0.081 3.919 24 O -0.569 6.569 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.199 17.410 1.474 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.099 4.099 3 H 0.090 0.910 4 C -0.170 4.170 5 C -0.006 4.006 6 N -0.842 5.842 7 S 2.689 3.311 8 O -0.956 6.956 9 O -0.954 6.954 10 C -0.722 4.722 11 C -0.011 4.011 12 C -0.558 4.558 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.006 3.994 21 C -0.122 4.122 22 H 0.104 0.896 23 C 0.003 3.997 24 O -0.375 6.375 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.340 15.966 1.003 21.484 hybrid contribution 1.250 1.181 0.417 1.770 sum -13.090 17.148 1.420 21.620 Atomic orbital electron populations 1.22033 0.95234 1.02571 1.01546 1.20992 0.95949 0.98936 0.94067 0.90983 1.21971 1.01628 0.95858 0.97579 1.21387 1.00639 0.93070 0.85523 1.57989 1.73245 1.41783 1.11153 1.05713 0.78179 0.73164 0.74039 1.93525 1.82615 1.74058 1.45439 1.93536 1.82541 1.74011 1.45287 1.30489 1.20477 1.11316 1.09938 1.18959 0.95052 0.88296 0.98782 1.21006 0.89736 0.93090 1.51967 0.92088 1.25064 0.99539 0.94923 0.94946 1.69958 1.33913 0.99345 1.49706 0.86473 0.84374 0.78223 0.78233 1.20462 1.21017 1.19796 1.21446 1.00179 0.92340 0.85456 1.21654 1.02071 0.95585 0.92893 0.89554 1.22235 0.96601 0.95422 0.85455 1.86554 1.74058 1.60449 1.16390 0.91679 0.92722 0.92567 0.90977 0.90632 0.89084 0.91238 0.86269 0.86412 0.94932 0.94894 0.92562 0.91425 0.88432 0.93590 0.93313 0.77524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.12 37.16 0.30 -0.86 16 2 C -0.08 -0.69 2.71 -90.58 -0.25 -0.93 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -1.23 5.63 -26.61 -0.15 -1.38 16 5 C 0.12 1.39 5.84 -3.71 -0.02 1.37 16 6 N -1.01 -14.37 3.21 -113.28 -0.36 -14.73 16 7 S 2.59 49.13 5.41 -107.50 -0.58 48.55 16 8 O -0.97 -20.60 16.72 -57.54 -0.96 -21.56 16 9 O -0.96 -21.02 16.72 -57.54 -0.96 -21.99 16 10 C -0.59 -11.80 6.12 37.16 0.23 -11.58 16 11 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 12 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 16 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.13 1.69 4.99 -3.48 -0.02 1.67 16 21 C -0.10 -1.07 2.36 -90.27 -0.21 -1.28 16 22 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 23 C 0.08 0.70 5.96 37.16 0.22 0.92 16 24 O -0.57 -5.84 13.32 -35.23 -0.47 -6.31 16 25 H 0.06 0.55 4.97 -51.93 -0.26 0.29 16 26 H 0.05 0.35 6.57 -51.93 -0.34 0.01 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.12 7.10 -51.93 -0.37 0.75 16 31 H 0.07 0.72 6.70 -51.93 -0.35 0.37 16 32 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 33 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 0.77 6.69 -51.93 -0.35 0.43 16 38 H 0.10 1.45 6.94 -51.93 -0.36 1.09 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.36 6.73 -51.93 -0.35 0.01 16 41 H 0.38 2.07 9.12 45.56 0.42 2.49 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -35.95 333.10 -8.78 -44.73 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.73 Total: 0.83 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -0.45 Total: -24.86 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.37 Total: -40.92 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -2.39 Total: -49.85 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 49.13 SS G_CDS: -0.58 Total: 48.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.95 -8.78 -44.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598623689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.456 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds