Wall clock time and date at job start Tue Mar 31 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.45463 * 2 1 4 4 C 1.53045 * 109.45440 * 240.03718 * 2 1 3 5 5 C 1.53189 * 109.31267 * 301.34303 * 4 2 1 6 6 N 1.46923 * 108.77751 * 305.36979 * 5 4 2 7 7 S 1.65606 * 120.62889 * 233.58517 * 6 5 4 8 8 O 1.42094 * 104.27817 * 333.92814 * 7 6 5 9 9 O 1.42106 * 104.27580 * 206.07045 * 7 6 5 10 10 C 1.81396 * 104.45103 * 90.00030 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 90.00289 * 16 14 12 18 18 H 1.48505 * 109.47195 * 210.00171 * 16 14 12 19 19 H 1.48493 * 109.47449 * 330.00136 * 16 14 12 20 20 C 1.46931 * 118.74107 * 53.86074 * 6 5 4 21 21 C 1.53037 * 109.46143 * 119.97255 * 2 1 3 22 22 H 1.09000 * 109.49856 * 178.60492 * 21 2 1 23 23 C 1.53004 * 109.49348 * 298.66849 * 21 2 1 24 24 O 1.42905 * 109.46815 * 184.99874 * 23 21 2 25 25 H 1.09000 * 109.47578 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46768 * 299.96909 * 1 2 3 27 27 H 1.09004 * 109.47256 * 59.95935 * 1 2 3 28 28 H 1.09005 * 109.49426 * 181.39854 * 4 2 1 29 29 H 1.08992 * 109.49752 * 61.30124 * 4 2 1 30 30 H 1.08999 * 109.58666 * 185.58022 * 5 4 2 31 31 H 1.08997 * 109.70153 * 65.22728 * 5 4 2 32 32 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 33 33 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 34 34 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 35 35 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.58474 * 65.92316 * 20 6 5 38 38 H 1.08997 * 109.58648 * 186.35716 * 20 6 5 39 39 H 1.09000 * 109.47228 * 304.99393 * 23 21 2 40 40 H 1.08998 * 109.47643 * 64.99785 * 23 21 2 41 41 H 0.96701 * 114.00045 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0397 -0.7207 -1.2502 5 6 1.4994 -2.1541 -1.2644 6 7 1.8623 -2.8089 -0.0002 7 16 2.6647 -4.2575 -0.0003 8 8 2.3049 -4.8574 -1.2371 9 8 2.3053 -4.8573 1.2368 10 6 4.4207 -3.8024 -0.0007 11 6 5.2763 -5.0708 -0.0002 12 6 6.7351 -4.6926 -0.0011 13 1 7.0232 -3.6518 -0.0016 14 6 7.7021 -5.6756 -0.0003 15 7 7.3513 -6.9430 0.0007 16 14 9.5103 -5.2068 -0.0008 17 1 9.9895 -5.0815 1.3992 18 1 10.2937 -6.2569 -0.7000 19 1 9.6852 -3.9095 -0.7018 20 6 1.4945 -2.1570 1.2642 21 6 2.0399 -0.7209 1.2500 22 1 3.1296 -0.7429 1.2382 23 6 1.5575 0.0197 2.4989 24 8 2.1287 -0.5845 3.6612 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5134 0.8903 27 1 -0.3634 0.5145 -0.8896 28 1 3.1295 -0.7429 -1.2384 29 1 1.6957 -0.1933 -2.1398 30 1 1.9379 -2.7017 -2.0986 31 1 0.4145 -2.1368 -1.3687 32 1 4.6436 -3.2138 0.8892 33 1 4.6432 -3.2138 -0.8907 34 1 5.0534 -5.6598 -0.8899 35 1 5.0536 -5.6589 0.8901 36 1 8.0315 -7.6345 0.0009 37 1 0.4092 -2.1377 1.3630 38 1 1.9299 -2.7064 2.0988 39 1 1.8654 1.0639 2.4438 40 1 0.4706 -0.0360 2.5574 41 1 1.8660 -0.1650 4.4920 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598623689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:13 Heat of formation + Delta-G solvation = -168.892554 kcal Electronic energy + Delta-G solvation = -22701.987554 eV Core-core repulsion = 19321.118719 eV Total energy + Delta-G solvation = -3380.868835 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46177 -38.26638 -37.40753 -37.04570 -35.92080 -34.52461 -33.14925 -32.47380 -28.51963 -27.62902 -26.69399 -25.06258 -23.50574 -22.84864 -20.29954 -19.45059 -18.97200 -18.32479 -18.17350 -17.38802 -17.07572 -16.56463 -16.35719 -15.85604 -15.37420 -15.30054 -15.00920 -14.92431 -14.50911 -14.41123 -13.78278 -13.75351 -13.37477 -13.23958 -13.18077 -12.94962 -12.81421 -12.79128 -12.61555 -12.28364 -12.22553 -12.13817 -12.00805 -11.93101 -11.72665 -11.35397 -11.26868 -11.02914 -10.73832 -10.66566 -9.81031 -8.27545 -6.42163 -0.73035 1.39316 1.41816 1.52901 1.71399 2.36940 2.81833 3.05492 3.13997 3.34701 3.70272 3.80716 3.88084 4.02624 4.04917 4.14987 4.31701 4.35205 4.49529 4.57765 4.63162 4.69788 4.71259 4.74226 4.75863 4.96383 4.97917 5.15242 5.15880 5.23598 5.24027 5.26961 5.34402 5.42884 5.61023 5.66058 5.68690 6.04121 6.70861 7.01081 7.28044 8.84973 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.004646 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.462629 B = 6025.424178 C = 6463.113916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.076 4.076 3 H 0.092 0.908 4 C -0.130 4.130 5 C 0.108 3.892 6 N -0.995 5.995 7 S 2.611 3.389 8 O -0.992 6.992 9 O -0.996 6.996 10 C -0.586 4.586 11 C 0.022 3.978 12 C -0.540 4.540 13 H 0.074 0.926 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.257 1.257 20 C 0.125 3.875 21 C -0.103 4.103 22 H 0.069 0.931 23 C 0.081 3.919 24 O -0.599 6.599 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.007 0.993 35 H 0.003 0.997 36 H 0.268 0.732 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 20.679 1.190 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.094 4.094 3 H 0.110 0.890 4 C -0.169 4.169 5 C -0.016 4.016 6 N -0.833 5.833 7 S 2.709 3.291 8 O -0.982 6.982 9 O -0.987 6.987 10 C -0.718 4.718 11 C -0.017 4.017 12 C -0.579 4.579 13 H 0.092 0.908 14 C -0.202 4.202 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.181 1.181 20 C 0.001 3.999 21 C -0.123 4.123 22 H 0.087 0.913 23 C 0.003 3.997 24 O -0.408 6.408 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -14.622 19.252 0.729 24.187 hybrid contribution 1.234 0.192 0.520 1.353 sum -13.388 19.445 1.248 23.641 Atomic orbital electron populations 1.22024 0.94096 1.02178 1.02934 1.20999 0.96810 0.99376 0.92246 0.89002 1.22005 1.01213 0.94293 0.99350 1.21731 1.01962 0.94284 0.83614 1.57601 1.72002 1.40650 1.13093 1.04755 0.77603 0.74009 0.72696 1.93481 1.82756 1.75586 1.46393 1.93486 1.82791 1.75733 1.46662 1.30384 1.21026 1.08692 1.11713 1.18811 0.96140 0.90565 0.96172 1.21492 0.90800 0.93869 1.51724 0.90793 1.26137 1.05095 0.94712 0.94231 1.70106 1.35794 1.00725 1.50782 0.85283 0.77639 0.78475 0.78676 1.19581 1.20594 1.18126 1.21639 1.01185 0.93495 0.83627 1.21686 1.01042 0.94278 0.95275 0.91300 1.22308 0.97460 0.95850 0.84062 1.86508 1.74758 1.61608 1.17892 0.92894 0.91445 0.91193 0.91711 0.87999 0.89993 0.89318 0.84895 0.84204 0.97485 0.97848 0.92318 0.89640 0.90981 0.91543 0.91620 0.75388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.12 71.98 0.58 -1.13 16 2 C -0.08 -1.03 2.71 -10.77 -0.03 -1.06 16 3 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.13 -2.05 5.63 30.67 0.17 -1.88 16 5 C 0.11 2.35 5.84 86.36 0.50 2.85 16 6 N -0.99 -27.85 3.21 -512.30 -1.65 -29.50 16 7 S 2.61 101.86 5.41 -56.49 -0.31 101.56 16 8 O -0.99 -43.45 16.72 -127.65 -2.13 -45.59 16 9 O -1.00 -45.27 16.72 -127.65 -2.13 -47.40 16 10 C -0.59 -24.02 6.12 71.98 0.44 -23.58 16 11 C 0.02 1.21 4.98 29.85 0.15 1.35 16 12 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 13 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 14 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 15 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 16 Si 0.98 44.16 29.54 68.60 2.03 46.19 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 C 0.13 3.11 4.99 86.51 0.43 3.54 16 21 C -0.10 -1.94 2.36 -10.57 -0.02 -1.97 16 22 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 23 C 0.08 1.19 5.96 71.98 0.43 1.61 16 24 O -0.60 -11.43 13.32 -148.98 -1.98 -13.42 16 25 H 0.05 0.72 4.97 -2.39 -0.01 0.71 16 26 H 0.07 0.58 6.57 -2.38 -0.02 0.57 16 27 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.94 7.10 -2.39 -0.02 1.93 16 31 H 0.09 1.62 6.70 -2.39 -0.02 1.60 16 32 H 0.13 5.01 8.14 -2.39 -0.02 4.99 16 33 H 0.14 5.01 8.14 -2.39 -0.02 4.99 16 34 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.09 1.82 6.69 -2.39 -0.02 1.80 16 38 H 0.07 2.17 6.94 -2.39 -0.02 2.16 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.74 6.73 -2.39 -0.02 0.72 16 41 H 0.40 3.72 9.12 -74.06 -0.68 3.04 16 Total: -1.00 -79.85 333.10 -2.19 -82.05 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.35 Total: 14.68 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 3.35 Total: -50.72 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -1.36 Total: -87.35 kcal Atomic # 8 Polarization: -100.15 SS G_CDS: -6.25 Total: -106.40 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 101.86 SS G_CDS: -0.31 Total: 101.56 kcal Total: -79.85 -2.19 -82.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598623689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.846 kcal (2) G-P(sol) polarization free energy of solvation -79.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds