Wall clock time and date at job start Tue Mar 31 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46659 * 2 1 4 4 C 1.52994 * 109.47047 * 119.99904 * 2 1 3 5 5 S 1.81398 * 109.47242 * 185.00019 * 4 2 1 6 6 C 1.81397 * 101.92345 * 179.97438 * 5 4 2 7 7 O 1.42102 * 108.57803 * 294.48769 * 5 4 2 8 8 O 1.42098 * 108.57732 * 65.50979 * 5 4 2 9 9 N 1.46894 * 109.46873 * 240.00229 * 2 1 3 10 10 C 1.46893 * 111.00731 * 71.99683 * 9 2 1 11 11 C 1.52995 * 109.47572 * 163.13185 * 10 9 2 12 12 H 1.08996 * 109.47027 * 62.89889 * 11 10 9 13 13 O 1.42902 * 109.47134 * 302.89935 * 11 10 9 14 14 C 1.50699 * 109.47350 * 182.89877 * 11 10 9 15 15 H 1.08009 * 120.00081 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00288 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00109 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00011 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47022 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47145 * 299.99606 * 18 16 14 21 21 H 1.48501 * 109.47031 * 60.00025 * 18 16 14 22 22 C 1.46910 * 110.99874 * 308.03829 * 9 2 1 23 23 C 1.53001 * 117.49698 * 266.01205 * 22 9 2 24 24 C 1.52995 * 117.49731 * 197.38995 * 22 9 2 25 25 H 1.08999 * 109.47575 * 306.45724 * 1 2 3 26 26 H 1.09000 * 109.47490 * 66.45574 * 1 2 3 27 27 H 1.08997 * 109.47389 * 186.45462 * 1 2 3 28 28 H 1.09008 * 109.47501 * 304.99824 * 4 2 1 29 29 H 1.09007 * 109.47236 * 65.00017 * 4 2 1 30 30 H 1.09004 * 109.47295 * 59.99856 * 6 5 4 31 31 H 1.08997 * 109.47053 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47059 * 299.99780 * 6 5 4 33 33 H 1.09001 * 109.46795 * 43.12684 * 10 9 2 34 34 H 1.09000 * 109.46896 * 283.13730 * 10 9 2 35 35 H 0.96695 * 113.99749 * 300.00151 * 13 11 10 36 36 H 0.97000 * 119.99339 * 0.02562 * 17 16 14 37 37 H 1.08999 * 115.54909 * 51.72696 * 22 9 2 38 38 H 1.08996 * 117.50063 * 0.02562 * 23 22 9 39 39 H 1.09003 * 117.49068 * 145.02289 * 23 22 9 40 40 H 1.09002 * 117.49754 * 214.98115 * 24 22 9 41 41 H 1.09005 * 117.50135 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 3.8478 -0.5932 1.3257 6 6 4.2233 -1.4978 2.8525 7 8 4.3991 -1.3080 0.2281 8 8 4.1976 0.7715 1.5109 9 7 2.0196 -0.6924 -1.1994 10 6 1.7955 0.1182 -2.4038 11 6 2.6667 -0.4115 -3.5445 12 1 2.3689 -1.4319 -3.7854 13 8 4.0379 -0.3977 -3.1426 14 6 2.4904 0.4631 -4.7590 15 1 1.8239 1.3122 -4.7210 16 6 3.1798 0.1795 -5.9188 17 7 3.9917 -0.8541 -5.9651 18 14 2.9618 1.2641 -7.4240 19 1 3.8064 0.7492 -8.5317 20 1 1.5368 1.2508 -7.8415 21 1 3.3686 2.6541 -7.0957 22 6 1.3982 -2.0169 -1.3332 23 6 2.1539 -3.2136 -0.7518 24 6 2.0733 -3.0227 -2.2677 25 1 -0.3634 0.6106 0.8265 26 1 -0.3634 0.4105 -0.9421 27 1 -0.3634 -1.0211 0.1155 28 1 1.6054 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 3.8707 -2.5253 2.7622 31 1 5.3003 -1.4963 3.0202 32 1 3.7245 -1.0150 3.6929 33 1 2.0583 1.1557 -2.1974 34 1 0.7456 0.0596 -2.6910 35 1 4.3716 0.4803 -2.9128 36 1 4.1052 -1.4170 -5.1834 37 1 0.3098 -2.0333 -1.2778 38 1 3.1117 -3.0182 -0.2698 39 1 1.5624 -4.0176 -0.3137 40 1 1.4289 -3.7012 -2.8269 41 1 2.9786 -2.7019 -2.7831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809573998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:18 Heat of formation + Delta-G solvation = -81.444291 kcal Electronic energy + Delta-G solvation = -23456.947492 eV Core-core repulsion = 20079.870699 eV Total energy + Delta-G solvation = -3377.076793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.03852 -36.69797 -35.67714 -35.53235 -34.84746 -31.92348 -31.28464 -29.67082 -27.68504 -27.33543 -23.89403 -22.42376 -21.96076 -20.81849 -19.16416 -18.61509 -17.09642 -16.55503 -16.15806 -16.02557 -15.56550 -15.11589 -14.76984 -14.29274 -13.70186 -13.54561 -13.46744 -13.28464 -13.04284 -12.80958 -12.63871 -12.59505 -12.25696 -11.96327 -11.73091 -11.70614 -11.48695 -10.95996 -10.93473 -10.84062 -10.74235 -10.63232 -10.28496 -10.04951 -9.99085 -9.71798 -9.59037 -8.99668 -8.33061 -7.93145 -7.67653 -6.23122 -4.05477 0.12776 2.94142 3.47504 3.49536 3.68426 3.82282 3.96620 4.17870 4.25221 4.57717 4.61064 4.69613 4.71605 5.03112 5.17392 5.31618 5.36919 5.41836 5.47205 5.48889 5.50887 5.58254 5.73450 5.82655 5.95398 6.06226 6.11004 6.19623 6.26797 6.47694 6.60053 6.76735 6.91154 7.44724 7.52788 7.76908 8.16619 8.47666 8.98888 9.43890 9.80892 11.17352 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021812 B = 0.005264 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.385392 B = 5318.344096 C = 5487.889551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 H 0.093 0.907 4 C -0.604 4.604 5 S 2.425 3.575 6 C -0.674 4.674 7 O -0.887 6.887 8 O -0.947 6.947 9 N -0.493 5.493 10 C 0.040 3.960 11 C 0.214 3.786 12 H 0.063 0.937 13 O -0.562 6.562 14 C -0.652 4.652 15 H 0.044 0.956 16 C 0.036 3.964 17 N -0.893 5.893 18 Si 1.064 2.936 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.003 3.997 23 C -0.189 4.189 24 C -0.158 4.158 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.348 0.652 36 H 0.286 0.714 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.827 -2.642 18.298 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 H 0.111 0.889 4 C -0.733 4.733 5 S 2.604 3.396 6 C -0.821 4.821 7 O -0.884 6.884 8 O -0.945 6.945 9 N -0.217 5.217 10 C -0.086 4.086 11 C 0.157 3.843 12 H 0.080 0.920 13 O -0.365 6.365 14 C -0.691 4.691 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.528 5.528 18 Si 0.893 3.107 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.215 1.215 22 C -0.106 4.106 23 C -0.227 4.227 24 C -0.195 4.195 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.193 0.807 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.289 -2.769 16.117 16.906 hybrid contribution -2.218 0.207 2.362 3.246 sum -6.507 -2.563 18.478 19.758 Atomic orbital electron populations 1.22381 0.96376 1.02272 1.02465 1.21325 0.94350 0.97420 0.88583 0.88927 1.30420 1.26550 1.10559 1.05771 1.07992 0.78481 0.76360 0.76814 1.30505 1.12006 1.15599 1.23980 1.93688 1.74721 1.73549 1.46409 1.93566 1.81784 1.32568 1.86542 1.62125 1.55758 1.01592 1.02247 1.22957 0.99331 0.96104 0.90229 1.19667 0.79174 0.97248 0.88253 0.91990 1.86504 1.28175 1.32695 1.89101 1.22482 1.31653 1.15872 0.99078 0.93743 1.25679 0.92992 0.97875 1.00767 1.70613 1.32834 1.14649 1.34686 0.83640 0.75889 0.75301 0.75844 1.20822 1.21705 1.21541 1.22246 0.94164 0.86752 1.07405 1.23296 1.02996 0.98139 0.98224 1.23197 1.04112 0.99948 0.92284 0.92357 0.91748 0.92008 0.85696 0.84821 0.85714 0.85666 0.86162 0.91838 0.95042 0.80739 0.90202 0.90122 0.86768 0.90049 0.89683 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 8.40 37.16 0.31 -1.76 16 2 C 0.09 1.29 2.29 -67.72 -0.16 1.14 16 3 H 0.09 1.33 7.81 -51.93 -0.41 0.93 16 4 C -0.60 -6.22 5.10 37.15 0.19 -6.03 16 5 S 2.42 29.98 5.28 -107.50 -0.57 29.41 16 6 C -0.67 -5.11 10.62 101.05 1.07 -4.04 16 7 O -0.89 -15.02 15.06 -57.83 -0.87 -15.89 16 8 O -0.95 -15.13 18.10 -57.83 -1.05 -16.18 16 9 N -0.49 -8.60 3.28 -218.73 -0.72 -9.31 16 10 C 0.04 0.84 4.07 -3.83 -0.02 0.83 16 11 C 0.21 5.41 1.78 -27.89 -0.05 5.36 16 12 H 0.06 1.65 4.95 -51.93 -0.26 1.40 16 13 O -0.56 -14.81 11.53 -35.23 -0.41 -15.21 16 14 C -0.65 -18.36 8.76 -34.44 -0.30 -18.66 16 15 H 0.04 1.23 7.74 -52.48 -0.41 0.83 16 16 C 0.04 1.04 5.40 -17.82 -0.10 0.94 16 17 N -0.89 -27.63 13.53 55.43 0.75 -26.88 16 18 Si 1.06 25.49 29.90 -169.99 -5.08 20.40 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.00 0.05 3.74 -67.71 -0.25 -0.20 16 23 C -0.19 -2.77 8.83 -26.73 -0.24 -3.00 16 24 C -0.16 -2.84 8.60 -26.73 -0.23 -3.07 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.85 6.92 -51.93 -0.36 0.49 16 27 H 0.06 0.68 6.58 -51.93 -0.34 0.34 16 28 H 0.12 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.13 1.19 6.12 -51.92 -0.32 0.88 16 30 H 0.12 0.72 8.14 -51.92 -0.42 0.29 16 31 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.12 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 1.31 7.76 -51.93 -0.40 0.91 16 34 H 0.03 0.64 7.23 -51.93 -0.38 0.27 16 35 H 0.35 8.70 9.04 45.56 0.41 9.11 16 36 H 0.29 9.00 6.47 -40.82 -0.26 8.73 16 37 H 0.08 1.20 6.33 -51.93 -0.33 0.87 16 38 H 0.11 1.74 5.89 -51.93 -0.31 1.44 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.12 2.74 6.03 -51.93 -0.31 2.42 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -36.27 331.42 -8.13 -44.40 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -5.42 Total: 12.77 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 0.24 Total: -28.51 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.03 Total: -36.19 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -2.32 Total: -47.28 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Atomic # 16 Polarization: 29.98 SS G_CDS: -0.57 Total: 29.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.27 -8.13 -44.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.047 kcal (2) G-P(sol) polarization free energy of solvation -36.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds