Wall clock time and date at job start Tue Mar 31 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.56893 * 2 1 4 4 C 1.54485 * 110.50887 * 237.31699 * 2 1 3 5 5 O 1.44418 * 104.80840 * 265.33647 * 4 2 1 6 6 C 1.44424 * 105.27443 * 319.49087 * 5 4 2 7 7 C 1.54476 * 104.80534 * 40.50817 * 6 5 4 8 8 H 1.09003 * 110.62902 * 94.72724 * 7 6 5 9 9 N 1.46504 * 110.51331 * 217.37692 * 7 6 5 10 10 S 1.65592 * 120.00181 * 259.64216 * 9 7 6 11 11 O 1.42102 * 104.27941 * 308.93077 * 10 9 7 12 12 O 1.42098 * 104.27676 * 181.07101 * 10 9 7 13 13 C 1.81404 * 104.44847 * 65.00199 * 10 9 7 14 14 C 1.52997 * 109.47118 * 180.02562 * 13 10 9 15 15 C 1.53006 * 109.47164 * 299.99994 * 14 13 10 16 16 C 1.52999 * 109.47592 * 59.99699 * 14 13 10 17 17 C 1.50698 * 109.47342 * 179.97438 * 14 13 10 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46790 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47548 * 120.00188 * 21 19 17 24 24 H 1.48504 * 109.47233 * 240.00380 * 21 19 17 25 25 H 1.09000 * 109.46727 * 297.32211 * 1 2 3 26 26 H 1.08995 * 109.47160 * 57.31875 * 1 2 3 27 27 H 1.09002 * 109.47170 * 177.32600 * 1 2 3 28 28 H 1.08998 * 110.37002 * 24.17197 * 4 2 1 29 29 H 1.09000 * 110.36971 * 146.50090 * 4 2 1 30 30 H 1.09005 * 110.36847 * 281.67790 * 6 5 4 31 31 H 1.09003 * 110.37537 * 159.34496 * 6 5 4 32 32 H 0.97003 * 119.99641 * 79.64255 * 9 7 6 33 33 H 1.09001 * 109.46975 * 59.99856 * 13 10 9 34 34 H 1.09002 * 109.46865 * 299.99492 * 13 10 9 35 35 H 1.09001 * 109.46801 * 180.02562 * 15 14 13 36 36 H 1.09001 * 109.46998 * 299.99705 * 15 14 13 37 37 H 1.09000 * 109.47050 * 59.99996 * 15 14 13 38 38 H 1.09000 * 109.47160 * 300.00333 * 16 14 13 39 39 H 1.09002 * 109.46719 * 60.00054 * 16 14 13 40 40 H 1.08993 * 109.47839 * 179.97438 * 16 14 13 41 41 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 6 2.0713 -0.7813 -1.2178 5 8 2.3069 -2.1178 -0.7239 6 6 2.8757 -1.9423 0.5920 7 6 2.0714 -0.7814 1.2180 8 1 1.2491 -1.1656 1.8216 9 7 2.9458 0.0710 2.0274 10 16 2.9690 -0.0940 3.6749 11 8 1.6002 -0.0351 4.0523 12 8 3.8928 0.8928 4.1130 13 6 3.6351 -1.7581 3.9539 14 6 3.7061 -2.0337 5.4571 15 6 4.6183 -1.0010 6.1224 16 6 2.3032 -1.9382 6.0601 17 6 4.2589 -3.4163 5.6889 18 1 4.5327 -4.0364 4.8481 19 6 4.4162 -3.8894 6.9744 20 7 4.0833 -3.1342 7.9984 21 14 5.1021 -5.6030 7.2616 22 1 5.3968 -6.2436 5.9547 23 1 6.3512 -5.5090 8.0591 24 1 4.1040 -6.4185 7.9993 25 1 -0.3633 0.4717 0.9130 26 1 -0.3633 0.5549 -0.8649 27 1 -0.3633 -1.0266 -0.0479 28 1 1.3311 -0.7974 -2.0178 29 1 3.0023 -0.3373 -1.5702 30 1 3.9301 -1.6764 0.5172 31 1 2.7534 -2.8504 1.1824 32 1 3.5113 0.7321 1.5982 33 1 4.6345 -1.8262 3.5240 34 1 2.9849 -2.4938 3.4804 35 1 4.6692 -1.1976 7.1934 36 1 5.6179 -1.0690 5.6930 37 1 4.2180 -0.0011 5.9548 38 1 1.9029 -0.9383 5.8924 39 1 1.6533 -2.6739 5.5861 40 1 2.3536 -2.1350 7.1309 41 1 4.1936 -3.4672 8.9027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921498241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:02 Heat of formation + Delta-G solvation = -125.466774 kcal Electronic energy + Delta-G solvation = -23033.682217 eV Core-core repulsion = 19654.696466 eV Total energy + Delta-G solvation = -3378.985751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89230 -36.60032 -36.31286 -35.40003 -34.96402 -32.61299 -31.69574 -28.35989 -26.71806 -26.43037 -25.74532 -25.24804 -22.67281 -20.88225 -19.62887 -18.91460 -17.43699 -17.00424 -16.10187 -15.92102 -15.44442 -15.34629 -15.14966 -14.74947 -14.52437 -13.74062 -13.25348 -13.06009 -12.77627 -12.69803 -12.54578 -12.42571 -12.15208 -12.06880 -11.51632 -11.47357 -11.11976 -11.10157 -11.06411 -10.99363 -10.92611 -10.73940 -10.38369 -10.31366 -10.14871 -10.02816 -9.68506 -9.66816 -9.27812 -8.70358 -8.42540 -6.05698 -4.17727 0.78604 3.07026 3.23897 3.32606 3.35077 3.82091 4.20187 4.23284 4.35939 4.57383 4.64085 4.73790 4.88197 5.03257 5.18624 5.20485 5.27438 5.41998 5.50103 5.56480 5.64111 5.66219 5.74141 5.79370 5.96551 6.07981 6.33109 6.57350 6.66759 6.76507 6.87222 6.97149 7.05399 7.28650 7.47332 7.65878 7.95509 8.06923 8.30257 8.81055 9.48049 10.95682 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.005033 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.761883 B = 5561.923949 C = 6236.406345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 H 0.092 0.908 4 C 0.047 3.953 5 O -0.369 6.369 6 C 0.022 3.978 7 C 0.118 3.882 8 H 0.111 0.889 9 N -1.120 6.120 10 S 2.590 3.410 11 O -0.962 6.962 12 O -0.963 6.963 13 C -0.582 4.582 14 C 0.082 3.918 15 C -0.164 4.164 16 C -0.164 4.164 17 C -0.501 4.501 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.883 5.883 21 Si 0.896 3.104 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.412 0.588 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.027 0.973 38 H 0.028 0.972 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 5.193 -15.555 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 H 0.110 0.890 4 C -0.030 4.030 5 O -0.287 6.287 6 C -0.057 4.057 7 C 0.010 3.990 8 H 0.129 0.871 9 N -0.876 5.876 10 S 2.688 3.312 11 O -0.952 6.952 12 O -0.953 6.953 13 C -0.716 4.716 14 C 0.080 3.920 15 C -0.222 4.222 16 C -0.222 4.222 17 C -0.541 4.541 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.245 0.755 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.136 5.548 -14.781 16.321 hybrid contribution 1.013 -1.058 -0.180 1.476 sum -3.123 4.490 -14.961 15.929 Atomic orbital electron populations 1.21839 0.93273 1.02716 1.02487 1.22795 0.97713 1.00381 0.94184 0.88964 1.23519 1.00116 0.83098 0.96308 1.89154 1.83137 1.25676 1.30756 1.24145 0.97732 0.99492 0.84290 1.22280 0.92785 0.90358 0.93612 0.87117 1.55960 1.55213 1.49234 1.27206 1.05752 0.75218 0.78633 0.71585 1.93547 1.34000 1.87311 1.80331 1.93559 1.65374 1.57743 1.78664 1.30573 1.11377 1.19221 1.10385 1.17937 0.94127 0.97157 0.82802 1.22277 0.98648 0.95374 1.05854 1.22278 0.95863 0.98155 1.05867 1.20971 1.42598 0.98190 0.92312 0.92218 1.24939 0.95187 0.97537 0.96074 1.69811 1.47625 1.36150 0.98560 0.86480 0.78709 0.84201 0.78257 1.19825 1.20964 1.20939 0.91610 0.92210 0.91771 0.88800 0.92146 0.91068 0.87898 0.75469 0.86145 0.86494 0.88610 0.94451 0.95422 0.95343 0.94450 0.88630 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.94 37.16 0.33 -0.98 16 2 C -0.13 -1.24 3.48 -89.05 -0.31 -1.55 16 3 H 0.09 0.78 7.83 -51.93 -0.41 0.37 16 4 C 0.05 0.42 7.18 37.94 0.27 0.69 16 5 O -0.37 -4.37 11.65 -35.23 -0.41 -4.78 16 6 C 0.02 0.25 7.35 37.93 0.28 0.53 16 7 C 0.12 1.39 3.33 -66.36 -0.22 1.17 16 8 H 0.11 1.39 7.14 -51.93 -0.37 1.02 16 9 N -1.12 -14.28 5.35 -3.55 -0.02 -14.30 16 10 S 2.59 46.02 4.47 -107.50 -0.48 45.54 16 11 O -0.96 -19.53 15.06 -57.54 -0.87 -20.40 16 12 O -0.96 -19.63 15.70 -57.54 -0.90 -20.53 16 13 C -0.58 -10.87 5.01 37.16 0.19 -10.68 16 14 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 15 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 16 C -0.16 -3.96 7.77 37.16 0.29 -3.67 16 17 C -0.50 -12.91 8.01 -34.44 -0.28 -13.19 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 20 N -0.88 -23.87 9.35 55.43 0.52 -23.35 16 21 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.69 7.87 -51.93 -0.41 0.28 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.73 8.06 -51.93 -0.42 0.32 16 31 H 0.10 1.14 7.90 -51.93 -0.41 0.73 16 32 H 0.41 4.31 8.68 -34.47 -0.30 4.01 16 33 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 34 H 0.12 1.95 7.90 -51.92 -0.41 1.54 16 35 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.64 5.47 -51.93 -0.28 0.35 16 38 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 41 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -31.48 328.47 -7.99 -39.47 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.42 Total: 5.88 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 0.67 Total: -27.91 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.50 Total: -37.65 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -2.18 Total: -45.71 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 46.02 SS G_CDS: -0.48 Total: 45.54 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.48 -7.99 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921498241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.998 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds