Wall clock time and date at job start Tue Mar 31 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.82844 * 2 1 4 4 C 1.54995 * 110.90545 * 123.64979 * 2 1 3 5 5 O 1.44380 * 103.48590 * 155.22384 * 4 2 1 6 6 C 1.43748 * 106.97804 * 319.93502 * 5 4 2 7 7 C 1.54102 * 107.29004 * 26.51631 * 6 5 4 8 8 H 1.08998 * 110.48723 * 239.16225 * 7 6 5 9 9 N 1.46498 * 110.48854 * 116.64589 * 7 6 5 10 10 S 1.65602 * 119.99612 * 96.17443 * 9 7 6 11 11 O 1.42109 * 104.27511 * 181.34803 * 10 9 7 12 12 O 1.42098 * 104.28120 * 309.20801 * 10 9 7 13 13 C 1.81394 * 104.44973 * 65.28269 * 10 9 7 14 14 C 1.53003 * 109.47387 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.46517 * 299.99470 * 14 13 10 16 16 C 1.52993 * 109.47159 * 59.99605 * 14 13 10 17 17 C 1.50707 * 109.47138 * 179.97438 * 14 13 10 18 18 H 1.08001 * 119.99608 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99869 * 179.97438 * 17 14 13 20 20 N 1.31520 * 119.99869 * 359.97438 * 19 17 14 21 21 Si 1.86795 * 120.00166 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47285 * 89.99841 * 21 19 17 23 23 H 1.48504 * 109.47506 * 210.00094 * 21 19 17 24 24 H 1.48502 * 109.47051 * 330.00121 * 21 19 17 25 25 H 1.09003 * 109.47289 * 183.64751 * 1 2 3 26 26 H 1.09002 * 109.47156 * 303.64381 * 1 2 3 27 27 H 1.08995 * 109.47177 * 63.64388 * 1 2 3 28 28 H 1.08995 * 110.62064 * 36.72182 * 4 2 1 29 29 H 1.09001 * 110.74969 * 273.77892 * 4 2 1 30 30 H 1.08996 * 109.87838 * 267.09699 * 6 5 4 31 31 H 1.08997 * 109.87900 * 145.93821 * 6 5 4 32 32 H 0.97001 * 120.00384 * 276.45921 * 9 7 6 33 33 H 1.09009 * 109.47044 * 299.99503 * 13 10 9 34 34 H 1.09001 * 109.47747 * 59.99183 * 13 10 9 35 35 H 1.08994 * 109.47224 * 60.00651 * 15 14 13 36 36 H 1.09008 * 109.46641 * 179.97438 * 15 14 13 37 37 H 1.09001 * 109.47344 * 299.99451 * 15 14 13 38 38 H 1.09002 * 109.47371 * 59.99841 * 16 14 13 39 39 H 1.08994 * 109.47114 * 180.02562 * 16 14 13 40 40 H 1.08998 * 109.47012 * 299.99873 * 16 14 13 41 41 H 0.97007 * 119.99442 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8023 1.2053 5 8 3.3941 -1.2143 0.7625 6 6 3.2718 -1.5882 -0.6202 7 6 2.0824 -0.8013 -1.2040 8 1 1.3256 -1.4842 -1.5898 9 7 2.5372 0.1074 -2.2593 10 16 2.4470 -0.3561 -3.8465 11 8 2.9945 0.7417 -4.5638 12 8 3.0693 -1.6333 -3.8747 13 6 0.6692 -0.5069 -4.1737 14 6 0.4523 -0.9347 -5.6266 15 6 1.0559 0.1144 -6.5625 16 6 1.1315 -2.2843 -5.8676 17 6 -1.0247 -1.0606 -5.8981 18 1 -1.7374 -0.8563 -5.1128 19 6 -1.4661 -1.4365 -7.1490 20 7 -0.5981 -1.6848 -8.1054 21 14 -3.2968 -1.5918 -7.4859 22 1 -3.8245 -0.2887 -7.9641 23 1 -3.5229 -2.6287 -8.5247 24 1 -3.9986 -1.9816 -6.2365 25 1 -0.3634 -1.0256 0.0654 26 1 -0.3633 0.5694 0.8555 27 1 -0.3633 0.4562 -0.9208 28 1 1.4562 -1.6704 1.4087 29 1 2.1581 -0.1688 2.0892 30 1 3.0825 -2.6587 -0.6993 31 1 4.1854 -1.3307 -1.1559 32 1 2.8951 0.9788 -2.0281 33 1 0.2391 -1.2541 -3.5065 34 1 0.1853 0.4546 -4.0023 35 1 2.1241 0.2050 -6.3660 36 1 0.9018 -0.1906 -7.5976 37 1 0.5719 1.0759 -6.3908 38 1 0.7016 -3.0317 -5.2008 39 1 0.9775 -2.5888 -6.9027 40 1 2.1998 -2.1936 -5.6711 41 1 -0.9087 -1.9489 -8.9856 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921498242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:04 Heat of formation + Delta-G solvation = -148.206451 kcal Electronic energy + Delta-G solvation = -23040.211783 eV Core-core repulsion = 19660.239965 eV Total energy + Delta-G solvation = -3379.971818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68046 -38.12841 -38.10607 -36.90881 -36.01302 -33.65180 -33.44697 -29.31728 -28.32615 -27.68622 -27.24100 -27.04095 -23.47936 -21.90064 -21.31769 -20.17908 -18.77424 -18.04981 -17.83930 -17.13234 -16.81383 -16.60101 -16.49156 -16.18309 -15.33820 -15.04049 -14.67639 -14.42755 -14.33793 -14.11570 -13.81662 -13.79021 -13.33934 -13.05323 -12.99868 -12.88603 -12.76941 -12.65969 -12.51463 -12.34162 -12.17750 -12.11703 -11.98772 -11.84018 -11.76633 -11.55386 -11.36521 -10.89861 -10.59894 -10.40780 -10.23905 -8.02168 -6.20740 -0.63763 1.44923 1.47126 1.55208 1.83892 2.44957 2.81664 2.97491 3.20350 3.29587 3.41128 3.81245 3.87796 3.97177 4.01559 4.16274 4.28498 4.33096 4.53867 4.60554 4.75858 4.81605 4.83991 4.87189 4.88239 4.97840 5.02127 5.07396 5.09646 5.24006 5.38594 5.41912 5.51295 5.65720 5.85759 5.98057 6.06512 6.12402 6.34655 6.84335 7.47832 8.97664 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.005030 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.174021 B = 5565.760846 C = 6225.919983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 H 0.102 0.898 4 C 0.044 3.956 5 O -0.396 6.396 6 C 0.029 3.971 7 C 0.113 3.887 8 H 0.109 0.891 9 N -1.102 6.102 10 S 2.609 3.391 11 O -0.993 6.993 12 O -0.987 6.987 13 C -0.583 4.583 14 C 0.069 3.931 15 C -0.161 4.161 16 C -0.160 4.160 17 C -0.515 4.515 18 H 0.065 0.935 19 C 0.017 3.983 20 N -0.909 5.909 21 Si 0.954 3.046 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.266 1.266 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.424 0.576 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 3.229 17.759 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 H 0.120 0.880 4 C -0.032 4.032 5 O -0.315 6.315 6 C -0.050 4.050 7 C 0.005 3.995 8 H 0.127 0.873 9 N -0.862 5.862 10 S 2.707 3.293 11 O -0.983 6.983 12 O -0.977 6.977 13 C -0.716 4.716 14 C 0.067 3.933 15 C -0.219 4.219 16 C -0.218 4.218 17 C -0.554 4.554 18 H 0.084 0.916 19 C -0.182 4.182 20 N -0.547 5.547 21 Si 0.780 3.220 22 H -0.205 1.205 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.261 0.739 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.172 2.847 17.094 17.465 hybrid contribution -1.357 0.205 -0.633 1.511 sum 0.815 3.052 16.460 16.761 Atomic orbital electron populations 1.21817 0.92047 1.03349 1.03414 1.23033 0.98023 1.00588 0.92646 0.87982 1.23885 0.83343 0.98575 0.97396 1.88867 1.30843 1.86662 1.25098 1.23743 0.99441 0.99327 0.82471 1.22471 0.95987 0.91669 0.89394 0.87326 1.55503 1.79572 1.28395 1.22758 1.04899 0.78656 0.73331 0.72451 1.93516 1.78297 1.55001 1.71487 1.93518 1.74624 1.43833 1.85688 1.30440 1.22165 1.11563 1.07413 1.17922 0.96886 0.92006 0.86466 1.22217 0.97098 0.98459 1.04097 1.22204 0.96983 0.98817 1.03778 1.21292 0.90993 1.46233 0.96879 0.91645 1.25672 1.01383 0.94941 0.96199 1.69955 1.34730 1.46916 1.03136 0.85624 0.80877 0.77548 0.77963 1.20507 1.21469 1.18990 0.91446 0.90152 0.92056 0.90487 0.86783 0.90828 0.90084 0.73930 0.84313 0.84257 0.95026 0.91139 0.94104 0.93892 0.91240 0.94867 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.19 71.98 0.66 -1.22 16 2 C -0.12 -1.85 3.44 -9.49 -0.03 -1.88 16 3 H 0.10 1.40 7.83 -2.39 -0.02 1.38 16 4 C 0.04 0.66 7.17 72.66 0.52 1.18 16 5 O -0.40 -8.91 11.52 -148.98 -1.72 -10.63 16 6 C 0.03 0.68 7.50 72.35 0.54 1.22 16 7 C 0.11 2.36 3.05 45.98 0.14 2.51 16 8 H 0.11 2.13 6.98 -2.39 -0.02 2.12 16 9 N -1.10 -26.57 5.35 -165.28 -0.88 -27.46 16 10 S 2.61 89.88 4.44 -56.49 -0.25 89.63 16 11 O -0.99 -40.12 15.70 -127.65 -2.00 -42.12 16 12 O -0.99 -39.10 15.43 -127.65 -1.97 -41.07 16 13 C -0.58 -20.63 4.92 71.98 0.35 -20.28 16 14 C 0.07 3.23 0.52 -52.93 -0.03 3.21 16 15 C -0.16 -7.86 7.78 71.98 0.56 -7.30 16 16 C -0.16 -7.73 7.77 71.98 0.56 -7.17 16 17 C -0.51 -25.93 8.01 25.60 0.21 -25.72 16 18 H 0.07 3.13 7.74 -2.91 -0.02 3.11 16 19 C 0.02 0.90 5.15 84.65 0.44 1.34 16 20 N -0.91 -49.69 9.35 21.45 0.20 -49.49 16 21 Si 0.95 41.23 29.54 68.60 2.03 43.25 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.96 8.01 -2.39 -0.02 0.94 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.10 7.93 -2.39 -0.02 2.08 16 32 H 0.42 8.52 8.58 -96.74 -0.83 7.69 16 33 H 0.14 4.21 7.48 -2.39 -0.02 4.20 16 34 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 35 H 0.03 1.48 5.46 -2.39 -0.01 1.46 16 36 H 0.07 3.79 6.07 -2.38 -0.01 3.77 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 40 H 0.03 1.53 5.47 -2.39 -0.01 1.52 16 41 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -66.62 328.16 -0.48 -67.10 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.20 Total: 24.91 kcal Atomic # 6 Polarization: -58.05 SS G_CDS: 3.92 Total: -54.13 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -0.68 Total: -76.95 kcal Atomic # 8 Polarization: -88.13 SS G_CDS: -5.69 Total: -93.82 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 89.88 SS G_CDS: -0.25 Total: 89.63 kcal Total: -66.62 -0.48 -67.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921498242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.102 kcal (2) G-P(sol) polarization free energy of solvation -66.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds